BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3839.p (506 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776590.1| iron-sulfur 4Fe-4S ferredoxin transmembrane ... 914 0.0 emb|CAL61798.2| Putative ferredoxin [Herminiimonas arsenicoxydans] 704 0.0 ref|YP_001099923.1| putative ferredoxin transmembrane protein [H... 703 0.0 ref|ZP_08273910.1| Type cbb3 cytochrome oxidase biogenesis prote... 700 0.0 ref|YP_001353325.1| 4Fe-4S ferredoxin, iron sulfur binding [Jant... 694 0.0 >ref|YP_003776590.1| iron-sulfur 4Fe-4S ferredoxin transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64682.1| iron-sulfur 4Fe-4S ferredoxin transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 485 Score = 914 bits (2362), Expect = 0.0, Method: Composition-based stats. Identities = 437/490 (89%), Positives = 457/490 (93%), Gaps = 5/490 (1%) Query: 17 MTPRQGKEGDPQPEAGTQQELPTKEGKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVF 76 M PRQ KEGDP P+ G +K GKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVF Sbjct: 1 MKPRQDKEGDPPPDTGD-----SKTGKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVF 55 Query: 77 LTQLVFYGLPWINWNERQAVLFDLASRKFYLFGLVLWPQDFIWLAALLIICAFSLFLFTA 136 LTQLVFYGLPWINWNERQAVLFDLASRKFYLFGLVLWPQDFIWLAALLIICAFSLFLFTA Sbjct: 56 LTQLVFYGLPWINWNERQAVLFDLASRKFYLFGLVLWPQDFIWLAALLIICAFSLFLFTA 115 Query: 137 IAGRVWCGYACPQTVYTEIFLWIERRIEGNRSARMRLDRQPWSFDKLWRKSAKHLAWGGL 196 +AGRVWCGY+CPQTVYTEIF+WIERRIEGNRSARMRLDRQPWSFDKLWRKSAKHLAWG + Sbjct: 116 VAGRVWCGYSCPQTVYTEIFMWIERRIEGNRSARMRLDRQPWSFDKLWRKSAKHLAWGAV 175 Query: 197 ALWTGISFVGYFSPIRELLPEIGQFALGPWESFWIVFYAFATYGNAGWMREQVCKYMCPY 256 ALWTGISFVGYFSPIR+LLPEI FALGPWESFWI+FY FATYGNAGWMREQVCKYMCPY Sbjct: 176 ALWTGISFVGYFSPIRDLLPEISGFALGPWESFWILFYGFATYGNAGWMREQVCKYMCPY 235 Query: 257 ARFQSAMFDRDSLVITYDNARGEPRMPAAKAAKLQEGRKAGDCIDCTMCVQVCPTGIDIR 316 ARFQSAMFDRDSL+ITYD ARGEPRMPAAKAAKL G +AGDCIDCTMCVQVCPTGIDIR Sbjct: 236 ARFQSAMFDRDSLIITYDVARGEPRMPAAKAAKLDTGARAGDCIDCTMCVQVCPTGIDIR 295 Query: 317 QGLQYMCIGCAACVDACDSVMDKIDRPRGLIRYSTENAIEQGFSTPEIRRRLFRPRILIY 376 QGLQYMCIGCAACVDACDSVMDKI RPRGLIRYSTENA+EQGFST EIRRRL RPRILIY Sbjct: 296 QGLQYMCIGCAACVDACDSVMDKIKRPRGLIRYSTENAVEQGFSTAEIRRRLVRPRILIY 355 Query: 377 TAILGAVIALFLGSLVVRTPLKLDVIRDRGSMGREVEDGIIENVYRLQVINTDERGHRYR 436 AILGAVIALF GSL VRTPLKLDVIRDRGSMGREVE+GIIENVYRLQ+INTDERGHRY Sbjct: 356 GAILGAVIALFAGSLWVRTPLKLDVIRDRGSMGREVEEGIIENVYRLQIINTDERGHRYL 415 Query: 437 ISASGIEGLTVDPAGPIELAATQTLMVPVRVRAPHGAGESGSNKIHIELQAEDQPALHVS 496 + A G+ GL+VDPA PIE+AATQT+ VPVRVRAPHGAGE GSNKI IEL+AEDQPAL+VS Sbjct: 416 VRAKGLAGLSVDPATPIEVAATQTVSVPVRVRAPHGAGEVGSNKIRIELEAEDQPALNVS 475 Query: 497 EKAVFLVPRR 506 EKAVFLVPRR Sbjct: 476 EKAVFLVPRR 485 >emb|CAL61798.2| Putative ferredoxin [Herminiimonas arsenicoxydans] Length = 472 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 325/462 (70%), Positives = 381/462 (82%), Gaps = 3/462 (0%) Query: 45 EYAVIRMYAAREQIYPREIQGRFASLRWLCVFLTQLVFYGLPWINWNERQAVLFDLASRK 104 E +VI+MYAARE+IYPRE +GR+ASLRWLCV+LTQL FYGLPW+NWN RQA+LFDL +RK Sbjct: 13 EVSVIQMYAAREEIYPRETKGRYASLRWLCVWLTQLAFYGLPWLNWNGRQALLFDLTARK 72 Query: 105 FYLFGLVLWPQDFIWLAALLIICAFSLFLFTAIAGRVWCGYACPQTVYTEIFLWIERRIE 164 FY+FG+VLWPQDFI+LAALLII A+ LFL TAIAGRVWCG+ACPQTVYTEIFLWIER IE Sbjct: 73 FYIFGIVLWPQDFIYLAALLIIAAYLLFLVTAIAGRVWCGFACPQTVYTEIFLWIERVIE 132 Query: 165 GNRSARMRLDRQPWSFDKLWRKSAKHLAWGGLALWTGISFVGYFSPIRELLPEIGQFALG 224 G RSARMRLD+QP SF K +K+AKH+AWGG+ALWTG +FV YF+PI L+ ++ LG Sbjct: 133 GKRSARMRLDKQPASFSKFAKKTAKHMAWGGVALWTGFTFVAYFTPIHTLMQKVLNLGLG 192 Query: 225 PWESFWIVFYAFATYGNAGWMREQVCKYMCPYARFQSAMFDRDSLVITYDNARGEPR-MP 283 PWE FWI+FYA ATYGNAGW+REQVCKYMCPYARFQS+MFD+DSL+ITYD RGEPR MP Sbjct: 193 PWELFWILFYALATYGNAGWLREQVCKYMCPYARFQSSMFDKDSLIITYDQKRGEPRGMP 252 Query: 284 AAKAAKLQEGRKAGDCIDCTMCVQVCPTGIDIRQGLQYMCIGCAACVDACDSVMDKIDRP 343 A+ + +K GDCIDCTMCVQVCP GIDIR GLQY CIGCAACVDAC+SVMDK+ P Sbjct: 253 GKSAS--ETDKKLGDCIDCTMCVQVCPVGIDIRDGLQYECIGCAACVDACNSVMDKVGSP 310 Query: 344 RGLIRYSTENAIEQGFSTPEIRRRLFRPRILIYTAILGAVIALFLGSLVVRTPLKLDVIR 403 RGLIRYST+NA+ S E+RRR FRPR+LIYT IL A++ +F+ +L +RTPLKLDVIR Sbjct: 311 RGLIRYSTDNALANNLSPKEVRRRAFRPRVLIYTGILLAIVIVFVTALALRTPLKLDVIR 370 Query: 404 DRGSMGREVEDGIIENVYRLQVINTDERGHRYRISASGIEGLTVDPAGPIELAATQTLMV 463 DRG+MGREVEDG+IENVYRLQ++NT E HRYRIS GIE L + ++LAAT+T V Sbjct: 371 DRGAMGREVEDGMIENVYRLQIMNTSESAHRYRISVYGIESLRLVTPDEVDLAATETRAV 430 Query: 464 PVRVRAPHGAGESGSNKIHIELQAEDQPALHVSEKAVFLVPR 505 P+R+R G GE GSNKI + LQA D L V+E AVF VPR Sbjct: 431 PIRLRTDQGQGEPGSNKISVTLQAVDDRRLQVTEDAVFFVPR 472 >ref|YP_001099923.1| putative ferredoxin transmembrane protein [Herminiimonas arsenicoxydans] Length = 466 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 325/462 (70%), Positives = 381/462 (82%), Gaps = 3/462 (0%) Query: 45 EYAVIRMYAAREQIYPREIQGRFASLRWLCVFLTQLVFYGLPWINWNERQAVLFDLASRK 104 E +VI+MYAARE+IYPRE +GR+ASLRWLCV+LTQL FYGLPW+NWN RQA+LFDL +RK Sbjct: 7 EVSVIQMYAAREEIYPRETKGRYASLRWLCVWLTQLAFYGLPWLNWNGRQALLFDLTARK 66 Query: 105 FYLFGLVLWPQDFIWLAALLIICAFSLFLFTAIAGRVWCGYACPQTVYTEIFLWIERRIE 164 FY+FG+VLWPQDFI+LAALLII A+ LFL TAIAGRVWCG+ACPQTVYTEIFLWIER IE Sbjct: 67 FYIFGIVLWPQDFIYLAALLIIAAYLLFLVTAIAGRVWCGFACPQTVYTEIFLWIERVIE 126 Query: 165 GNRSARMRLDRQPWSFDKLWRKSAKHLAWGGLALWTGISFVGYFSPIRELLPEIGQFALG 224 G RSARMRLD+QP SF K +K+AKH+AWGG+ALWTG +FV YF+PI L+ ++ LG Sbjct: 127 GKRSARMRLDKQPASFSKFAKKTAKHMAWGGVALWTGFTFVAYFTPIHTLMQKVLNLGLG 186 Query: 225 PWESFWIVFYAFATYGNAGWMREQVCKYMCPYARFQSAMFDRDSLVITYDNARGEPR-MP 283 PWE FWI+FYA ATYGNAGW+REQVCKYMCPYARFQS+MFD+DSL+ITYD RGEPR MP Sbjct: 187 PWELFWILFYALATYGNAGWLREQVCKYMCPYARFQSSMFDKDSLIITYDQKRGEPRGMP 246 Query: 284 AAKAAKLQEGRKAGDCIDCTMCVQVCPTGIDIRQGLQYMCIGCAACVDACDSVMDKIDRP 343 A+ + +K GDCIDCTMCVQVCP GIDIR GLQY CIGCAACVDAC+SVMDK+ P Sbjct: 247 GKSAS--ETDKKLGDCIDCTMCVQVCPVGIDIRDGLQYECIGCAACVDACNSVMDKVGSP 304 Query: 344 RGLIRYSTENAIEQGFSTPEIRRRLFRPRILIYTAILGAVIALFLGSLVVRTPLKLDVIR 403 RGLIRYST+NA+ S E+RRR FRPR+LIYT IL A++ +F+ +L +RTPLKLDVIR Sbjct: 305 RGLIRYSTDNALANNLSPKEVRRRAFRPRVLIYTGILLAIVIVFVTALALRTPLKLDVIR 364 Query: 404 DRGSMGREVEDGIIENVYRLQVINTDERGHRYRISASGIEGLTVDPAGPIELAATQTLMV 463 DRG+MGREVEDG+IENVYRLQ++NT E HRYRIS GIE L + ++LAAT+T V Sbjct: 365 DRGAMGREVEDGMIENVYRLQIMNTSESAHRYRISVYGIESLRLVTPDEVDLAATETRAV 424 Query: 464 PVRVRAPHGAGESGSNKIHIELQAEDQPALHVSEKAVFLVPR 505 P+R+R G GE GSNKI + LQA D L V+E AVF VPR Sbjct: 425 PIRLRTDQGQGEPGSNKISVTLQAVDDRRLQVTEDAVFFVPR 466 >ref|ZP_08273910.1| Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation [Oxalobacteraceae bacterium IMCC9480] gb|EGF32625.1| Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation [Oxalobacteraceae bacterium IMCC9480] Length = 481 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 317/461 (68%), Positives = 379/461 (82%) Query: 45 EYAVIRMYAAREQIYPREIQGRFASLRWLCVFLTQLVFYGLPWINWNERQAVLFDLASRK 104 E +VI+MYAARE+IYPREI+GR+A+LRWLCV+LTQLVFYGLPW+ WN+RQA+LFDL +RK Sbjct: 5 EVSVIKMYAAREEIYPREIKGRYATLRWLCVWLTQLVFYGLPWLQWNDRQALLFDLGARK 64 Query: 105 FYLFGLVLWPQDFIWLAALLIICAFSLFLFTAIAGRVWCGYACPQTVYTEIFLWIERRIE 164 FY+FG+VLWPQDFI+LA LLIICA+ LFL TA+AGRVWCG+ACPQTVYTEIF+WIER+IE Sbjct: 65 FYIFGIVLWPQDFIYLAVLLIICAYGLFLVTAVAGRVWCGFACPQTVYTEIFMWIERKIE 124 Query: 165 GNRSARMRLDRQPWSFDKLWRKSAKHLAWGGLALWTGISFVGYFSPIRELLPEIGQFALG 224 G RSARMRLD+Q W DKLWRKSAKHL WG +ALWTG++FVGYF+P+R L+ + LG Sbjct: 125 GTRSARMRLDKQAWGIDKLWRKSAKHLVWGAVALWTGLTFVGYFTPVRSLIGAVASLGLG 184 Query: 225 PWESFWIVFYAFATYGNAGWMREQVCKYMCPYARFQSAMFDRDSLVITYDNARGEPRMPA 284 PWE FWI+FY+ ATYGNAGWMREQVCKYMCPYARFQS+MFD+D+L+ITYD RGEPR P Sbjct: 185 PWEWFWILFYSLATYGNAGWMREQVCKYMCPYARFQSSMFDKDTLIITYDTDRGEPRGPR 244 Query: 285 AKAAKLQEGRKAGDCIDCTMCVQVCPTGIDIRQGLQYMCIGCAACVDACDSVMDKIDRPR 344 AK GDCIDC+MCVQVCPTGIDIR GLQY CIGCAAC+DAC+SVM KID P Sbjct: 245 AKKTVAPAANVQGDCIDCSMCVQVCPTGIDIRDGLQYECIGCAACIDACNSVMAKIDLPA 304 Query: 345 GLIRYSTENAIEQGFSTPEIRRRLFRPRILIYTAILGAVIALFLGSLVVRTPLKLDVIRD 404 GLIRYST++AI + +S +++ R+ RPR+LIYTAILG +I F SL +RTPLK+DVIRD Sbjct: 305 GLIRYSTDHAITKKWSFAQMQARVLRPRVLIYTAILGLIITAFFVSLFMRTPLKMDVIRD 364 Query: 405 RGSMGREVEDGIIENVYRLQVINTDERGHRYRISASGIEGLTVDPAGPIELAATQTLMVP 464 RGSMGREVEDG+IENVYRLQ++NTDE H ++IS +GI+G+ + ++L T + VP Sbjct: 365 RGSMGREVEDGMIENVYRLQIMNTDEASHHFKISVAGIDGIALASPDELDLEGTGSRAVP 424 Query: 465 VRVRAPHGAGESGSNKIHIELQAEDQPALHVSEKAVFLVPR 505 VRVR G G SGSNKI L A D + V+EKAVF VPR Sbjct: 425 VRVRVAAGEGRSGSNKISFTLVATDHASQQVTEKAVFFVPR 465 >ref|YP_001353325.1| 4Fe-4S ferredoxin, iron sulfur binding [Janthinobacterium sp. Marseille] gb|ABR89649.1| 4Fe-4S ferredoxin, iron sulfur binding [Janthinobacterium sp. Marseille] Length = 466 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 320/466 (68%), Positives = 380/466 (81%), Gaps = 1/466 (0%) Query: 40 KEGKDEYAVIRMYAAREQIYPREIQGRFASLRWLCVFLTQLVFYGLPWINWNERQAVLFD 99 K K E +VI+MYAARE+IYPRE +GR+ASLRWLCV+LTQL FYGLPW++WN RQA+LFD Sbjct: 2 KNSKPEVSVIKMYAAREEIYPRETKGRYASLRWLCVWLTQLAFYGLPWLSWNGRQALLFD 61 Query: 100 LASRKFYLFGLVLWPQDFIWLAALLIICAFSLFLFTAIAGRVWCGYACPQTVYTEIFLWI 159 LA+RKFY+FG+VLWPQDFI+LAALLIICA+ LFL TAIAGRVWCG++CPQTVYTEIFLWI Sbjct: 62 LAARKFYIFGIVLWPQDFIYLAALLIICAYLLFLATAIAGRVWCGFSCPQTVYTEIFLWI 121 Query: 160 ERRIEGNRSARMRLDRQPWSFDKLWRKSAKHLAWGGLALWTGISFVGYFSPIRELLPEIG 219 ER IEG RSARMRLD+QP SF KL +K+AKH+AWG +ALWTG +FVGYF+PIREL ++ Sbjct: 122 ERVIEGKRSARMRLDKQPASFAKLAKKTAKHMAWGAVALWTGFTFVGYFTPIRELALQVV 181 Query: 220 QFALGPWESFWIVFYAFATYGNAGWMREQVCKYMCPYARFQSAMFDRDSLVITYDNARGE 279 LGPW+ FW++FY+FATYGNAGW+REQVCKYMCPYARFQS+MFD+DSL+I+YD RGE Sbjct: 182 ALTLGPWQMFWVLFYSFATYGNAGWLREQVCKYMCPYARFQSSMFDKDSLIISYDRKRGE 241 Query: 280 PRMPAAKAAKLQEGRKAGDCIDCTMCVQVCPTGIDIRQGLQYMCIGCAACVDACDSVMDK 339 PR + K + G G CIDC+MCVQVCP GIDIR GLQY CIGCAACVDAC+SVMDK Sbjct: 242 PRGMSNKHSA-AAGLSFGACIDCSMCVQVCPVGIDIRDGLQYECIGCAACVDACNSVMDK 300 Query: 340 IDRPRGLIRYSTENAIEQGFSTPEIRRRLFRPRILIYTAILGAVIALFLGSLVVRTPLKL 399 I RGL+RY+T+NA+ S E+RRR RPR+LIY AIL A+I +F +L +RTPLKL Sbjct: 301 IGSARGLVRYTTDNALANNLSVKEVRRRALRPRVLIYGAILAAIIIVFFTALTMRTPLKL 360 Query: 400 DVIRDRGSMGREVEDGIIENVYRLQVINTDERGHRYRISASGIEGLTVDPAGPIELAATQ 459 DVIRDRG+MGREVEDG+IENVYRLQ++NT E+ H+Y+IS SGIE L + + L T+ Sbjct: 361 DVIRDRGAMGREVEDGMIENVYRLQIMNTSEQAHQYKISVSGIESLELATPDEVRLQGTE 420 Query: 460 TLMVPVRVRAPHGAGESGSNKIHIELQAEDQPALHVSEKAVFLVPR 505 T VPVRVR G GE GSN+I LQA D LHV+E AVF VPR Sbjct: 421 TRAVPVRVRVAAGHGEPGSNEISFSLQALDDAGLHVTEHAVFFVPR 466