BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3837.p         (85 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776588.1| transmembrane protein [Herbaspirillum serope...   138   2e-31

>ref|YP_003776588.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64680.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 83

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/81 (83%), Positives = 77/81 (95%)

Query: 1  MRKQQRNLAIVVWVAFLMAIAAEGVFFSLFNPEELAMVSGHEWEALGAYTVGFFCFWGSF 60
          MRKQQRN+AIV+WVAFLMA AAEG+FFS+FNP++LAM +GHEWEALGAYTVGFFCFW SF
Sbjct: 1  MRKQQRNIAIVIWVAFLMATAAEGIFFSIFNPDDLAMAAGHEWEALGAYTVGFFCFWVSF 60

Query: 61 AVCGLLAVRLTRALPRERLRH 81
          A+CGLLAVRLT+ LPRERLRH
Sbjct: 61 AICGLLAVRLTQTLPRERLRH 81