BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3834.p         (92 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776584.1| outer membrane W protein [Herbaspirillum ser...   161   2e-38
ref|YP_001100513.1| putative Outer membrane protein W [Herminiim...   128   2e-28
ref|YP_001352915.1| outer membrane protein W [Janthinobacterium ...   125   2e-27
ref|YP_299615.1| OmpW [Ralstonia eutropha JMP134] >gi|72122585|g...   115   2e-24
ref|YP_728251.1| OmpW family porin [Ralstonia eutropha H16] >gi|...   115   2e-24

>ref|YP_003776584.1| outer membrane W protein [Herbaspirillum seropedicae SmR1]
 emb|CAP19680.1| outer membrane protein W [Herbaspirillum seropedicae]
 gb|ADJ64676.1| outer membrane W protein [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/92 (86%), Positives = 88/92 (95%)

Query: 1   MPEAVFSPYVGAGINYTRISGVDLANGLQLDSNSVGGALQIGADYKINKNWLINFDIKKV 60
           MP++ FSPYVGAGINYTRIS V+++ GLQLD++S GGALQIGADYKINKNWLINFDIKKV
Sbjct: 116 MPDSAFSPYVGAGINYTRISSVNISGGLQLDNSSFGGALQIGADYKINKNWLINFDIKKV 175

Query: 61  QISSDVKTASGAKISSVKIDPWLIGVGVGYRF 92
           QISSDVKTA+GAKISSVKIDPWLIGVGVGYRF
Sbjct: 176 QISSDVKTAAGAKISSVKIDPWLIGVGVGYRF 207


>ref|YP_001100513.1| putative Outer membrane protein W [Herminiimonas arsenicoxydans]
 emb|CAL62391.1| putative outer membrane protein OmpW-like [Herminiimonas
           arsenicoxydans]
          Length = 206

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/92 (70%), Positives = 76/92 (82%), Gaps = 2/92 (2%)

Query: 2   PEAVFSPYVGAGINYTRISGVDLANGL-QLDSNSVGGALQIGADYKINKNWLINFDIKKV 60
           PE   SPYVGAGINYTRIS V L NG  QL+S+SVG ALQ G D+KI+K W +N D+KKV
Sbjct: 116 PEKTISPYVGAGINYTRISSVKLLNGAAQLESSSVGLALQAGVDFKIDKKWSLNLDVKKV 175

Query: 61  QISSDVKTASGAKISSVKIDPWLIGVGVGYRF 92
           QI SDV+TA+G ++S+VKIDPWLIGVGVGYRF
Sbjct: 176 QIRSDVRTAAG-QLSAVKIDPWLIGVGVGYRF 206


>ref|YP_001352915.1| outer membrane protein W [Janthinobacterium sp. Marseille]
 gb|ABR89936.1| outer membrane protein W [Janthinobacterium sp. Marseille]
          Length = 206

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/92 (69%), Positives = 75/92 (81%), Gaps = 2/92 (2%)

Query: 2   PEAVFSPYVGAGINYTRISGVDLANGL-QLDSNSVGGALQIGADYKINKNWLINFDIKKV 60
           PE   SPYVGAGINYTRIS VDL NG   L+ +SVG ALQ G D+KI+KNW IN D+KKV
Sbjct: 116 PEKTISPYVGAGINYTRISSVDLLNGAATLEKSSVGLALQAGVDFKIDKNWSINLDVKKV 175

Query: 61  QISSDVKTASGAKISSVKIDPWLIGVGVGYRF 92
           QI SDV TA+G ++S+VK+DPWL+GVGVGYRF
Sbjct: 176 QIRSDVNTAAG-QLSAVKVDPWLVGVGVGYRF 206


>ref|YP_299615.1| OmpW [Ralstonia eutropha JMP134]
 gb|AAZ64771.1| OmpW [Ralstonia eutropha JMP134]
          Length = 216

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/93 (63%), Positives = 69/93 (74%), Gaps = 2/93 (2%)

Query: 1   MPEAVFSPYVGAGINYTRISGVDLANG-LQLDSNSVGGALQIGADYKINKNWLINFDIKK 59
           +PE    PYVGAG+N+TRI G D+AN  LQLD+ SV  ALQIG DYK+ KNW +N DIKK
Sbjct: 125 LPEGTIRPYVGAGLNFTRIWGADIANNTLQLDNWSVAPALQIGMDYKLTKNWFLNADIKK 184

Query: 60  VQISSDVKTASGAKISSVKIDPWLIGVGVGYRF 92
           V + SDVK A G KIS V +DPWL  +GVGYRF
Sbjct: 185 VWLGSDVK-AGGEKISKVNLDPWLFSMGVGYRF 216


>ref|YP_728251.1| OmpW family porin [Ralstonia eutropha H16]
 emb|CAJ94886.1| Porin, OmpW family [Ralstonia eutropha H16]
          Length = 214

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/93 (62%), Positives = 70/93 (75%), Gaps = 2/93 (2%)

Query: 1   MPEAVFSPYVGAGINYTRISGVDLAN-GLQLDSNSVGGALQIGADYKINKNWLINFDIKK 59
           +P   F PY+GAG+N+TRI G D+AN  LQLDS SVG ALQIG DYK+ KNW +N DIKK
Sbjct: 123 IPNGTFRPYIGAGLNFTRIWGADIANNSLQLDSWSVGPALQIGMDYKLTKNWFLNADIKK 182

Query: 60  VQISSDVKTASGAKISSVKIDPWLIGVGVGYRF 92
           + +SSDVK A   K+S V +DPWL  +GVGYRF
Sbjct: 183 IWLSSDVK-AGDVKVSKVNLDPWLFSMGVGYRF 214