BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3831.p         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776582.1| transcription regulator protein [Herbaspiril...   292   1e-77
ref|YP_001754198.1| AsnC family transcriptional regulator [Methy...   175   2e-42
ref|ZP_01746019.1| transcriptional regulatory protein [Sagittula...   173   7e-42
ref|YP_004866860.1| AsnC family transcriptional regulator [Gluco...   171   2e-41
ref|YP_001240097.1| AsnC family transcriptional regulator [Brady...   169   1e-40

>ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64674.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 153

 Score =  292 bits (747), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 151/153 (98%), Positives = 153/153 (100%)

Query: 1   MSLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMDEGYVKEVRAILDPEK 60
           MSLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLM+EGYVKEVRAILDPEK
Sbjct: 1   MSLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEK 60

Query: 61  LGLPVLVTVGVVLDRSTPESFAEFEKAVREIAAVQECLLLAGEFDYWIKLRVKDLQAFNR 120
           LGLPVLVTVGVVLDRSTPESFAEFEKAVR+IAAVQECLLLAGEFDYWIKLRVKDLQAFNR
Sbjct: 61  LGLPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNR 120

Query: 121 LHANTLLRLPGVRQLRSFFVLNEVKNNPELVVE 153
           LHANTLLRLPGVRQLRSFFVLNEVKNNPELVVE
Sbjct: 121 LHANTLLRLPGVRQLRSFFVLNEVKNNPELVVE 153


>ref|YP_001754198.1| AsnC family transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gb|ACB23515.1| transcriptional regulator, AsnC family [Methylobacterium
           radiotolerans JCM 2831]
          Length = 161

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/148 (56%), Positives = 114/148 (77%)

Query: 3   LDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMDEGYVKEVRAILDPEKLG 62
           LDR+D++IL+ LQ DGR+ NAE+A+++G SA  C    +RL  +G+V+ VRA++DP ++G
Sbjct: 12  LDRIDQKILRLLQADGRMANAEIAERVGTSAATCHRRIQRLFADGFVRAVRALIDPMRVG 71

Query: 63  LPVLVTVGVVLDRSTPESFAEFEKAVREIAAVQECLLLAGEFDYWIKLRVKDLQAFNRLH 122
              LV VGVVLDRSTPESF+EFE AVR I A+ +C L+AG+FDY +K+RV D+  FNRLH
Sbjct: 72  RGTLVFVGVVLDRSTPESFSEFEAAVRAIPALLDCHLVAGDFDYMLKIRVSDMADFNRLH 131

Query: 123 ANTLLRLPGVRQLRSFFVLNEVKNNPEL 150
           + TL+ LPGVRQ R+FFV+ EV +N  L
Sbjct: 132 SATLIGLPGVRQTRTFFVMKEVIDNAPL 159


>ref|ZP_01746019.1| transcriptional regulatory protein [Sagittula stellata E-37]
 gb|EBA08641.1| transcriptional regulatory protein [Sagittula stellata E-37]
          Length = 158

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 85/147 (57%), Positives = 108/147 (73%)

Query: 4   DRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMDEGYVKEVRAILDPEKLGL 63
           DR+D +IL+ALQ DGR+ NAELA ++G+SA  C   T+RL D GYV  VRA ++P  +GL
Sbjct: 10  DRIDLKILRALQSDGRLTNAELASRVGVSAATCHRRTQRLFDLGYVTGVRAAINPSAVGL 69

Query: 64  PVLVTVGVVLDRSTPESFAEFEKAVREIAAVQECLLLAGEFDYWIKLRVKDLQAFNRLHA 123
             LV VGVVLDRSTPESFA FE AV  +  V +C L+AG+FDY +K+RV+D+  FN+LH 
Sbjct: 70  GALVMVGVVLDRSTPESFAAFEGAVNAMKEVLDCQLVAGDFDYLLKIRVRDMSDFNKLHG 129

Query: 124 NTLLRLPGVRQLRSFFVLNEVKNNPEL 150
             L+ LPGVRQ R+FFV+ EVK N  L
Sbjct: 130 QKLIALPGVRQTRTFFVMREVKENGSL 156


>ref|YP_004866860.1| AsnC family transcriptional regulator [Gluconacetobacter xylinus
           NBRC 3288]
 dbj|BAK82490.1| transcriptional regulator AsnC family [Gluconacetobacter xylinus
           NBRC 3288]
          Length = 159

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/149 (57%), Positives = 112/149 (75%)

Query: 2   SLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMDEGYVKEVRAILDPEKL 61
           SLD+ D++IL+ LQKDGR+ NA+LA K  +SA  C    + L+  G+++ VRA+LDP  L
Sbjct: 9   SLDKADRKILRFLQKDGRMANADLAVKANISAATCHRRIQMLLKAGFIRSVRALLDPAML 68

Query: 62  GLPVLVTVGVVLDRSTPESFAEFEKAVREIAAVQECLLLAGEFDYWIKLRVKDLQAFNRL 121
            L  LV VGVVLDRSTPESFA FE+A+R I AV +C L+AG+FDY++K+RVKD+  FNRL
Sbjct: 69  DLGSLVLVGVVLDRSTPESFAAFEQAIRTIPAVLDCHLVAGDFDYFLKIRVKDMTDFNRL 128

Query: 122 HANTLLRLPGVRQLRSFFVLNEVKNNPEL 150
           H + LL LPGVRQ R+FFV+ EV +N  L
Sbjct: 129 HGSKLLALPGVRQTRTFFVMKEVVDNAPL 157


>ref|YP_001240097.1| AsnC family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ36191.1| transcriptional regulator, AsnC family [Bradyrhizobium sp. BTAi1]
          Length = 158

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/148 (55%), Positives = 112/148 (75%)

Query: 3   LDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMDEGYVKEVRAILDPEKLG 62
           LDR+D+RIL+ LQKDGR+ NAELA  + +S   C   T+RL +EGY++ VRA + PEK+ 
Sbjct: 9   LDRVDRRILQLLQKDGRMSNAELAAAVHVSPATCHRRTQRLFEEGYIRSVRAQIAPEKVE 68

Query: 63  LPVLVTVGVVLDRSTPESFAEFEKAVREIAAVQECLLLAGEFDYWIKLRVKDLQAFNRLH 122
              LV VGVVLDRSTPESF  FE A+R++  V +C L+AG+FD+++K+RV+D+Q FNR+H
Sbjct: 69  RSALVLVGVVLDRSTPESFRTFEAAIRKLKFVLDCHLVAGDFDFFLKIRVRDMQDFNRMH 128

Query: 123 ANTLLRLPGVRQLRSFFVLNEVKNNPEL 150
            + L+ LPGVRQ R+FFV+ EV +N  L
Sbjct: 129 GDQLISLPGVRQTRTFFVMKEVVDNAPL 156