BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3829.p (180 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776580.1| transcription regulator protein [Herbaspiril... 228 2e-58 emb|CCA85008.1| putative transcription regulator protein, MarR f... 124 8e-27 ref|YP_003751456.1| MarR family transcriptional regulator [Ralst... 120 1e-25 emb|CAQ17343.1| hypothetical protein RSMK01797 [Ralstonia solana... 119 2e-25 ref|ZP_00943795.1| Transcriptional regulator, MarR family [Ralst... 119 3e-25 >ref|YP_003776580.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64672.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 133/173 (76%), Positives = 148/173 (85%), Gaps = 4/173 (2%) Query: 7 MSTGFTNDDSSSAAEALRDFYIRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLA 66 MST FT+D ++AA+ALRDFY+RSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLA Sbjct: 1 MSTPFTSD-HTAAADALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLA 59 Query: 67 TAFGFAPRTITEAIDALERDGLVQRNGDTTDRRVKYIALTASGKEVLRASEPVKKTFIDG 126 TAFGFAPRTITEAIDALERDGLVQR GD +DRRVK+IALTA+G+EVLRASEPVKK+FIDG Sbjct: 60 TAFGFAPRTITEAIDALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDG 119 Query: 127 LFAALSEEEIGALTTVLGKLNHRLAELEEVYSSNAPVPAAATDELPAKRSRKK 179 LF AL +E+ LT VLGKLN RLAELEE Y + A T+ P KR R+K Sbjct: 120 LFTALDADEVHTLTQVLGKLNVRLAELEEAYCAKG---EAGTEAAPGKRGRRK 169 >emb|CCA85008.1| putative transcription regulator protein, MarR family [Ralstonia syzygii R24] Length = 157 Score = 124 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 66/135 (48%), Positives = 90/135 (66%) Query: 22 ALRDFYIRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGFAPRTITEAID 81 ALRDFYIRS LDKL+A +G S AR K++ I VR+ DL AFG+APRTITEA+D Sbjct: 16 ALRDFYIRSQSVLDKLLAEKGISWARMKLIYFIRLQGSVRSVDLMRAFGYAPRTITEAVD 75 Query: 82 ALERDGLVQRNGDTTDRRVKYIALTASGKEVLRASEPVKKTFIDGLFAALSEEEIGALTT 141 ALERDGLV+R D DRR K I+LT +GK + +++EP+++ + L +E AL Sbjct: 76 ALERDGLVERVPDPVDRRAKNISLTPAGKALCKSAEPIRRQLSADVCGVLDAKEQRALQD 135 Query: 142 VLGKLNHRLAELEEV 156 +L ++ RL +E+V Sbjct: 136 MLTRMTQRLVMIEQV 150 >ref|YP_003751456.1| MarR family transcriptional regulator [Ralstonia solanacearum PSI07] emb|CBJ50147.1| putative transcription regulator protein, MarR family [Ralstonia solanacearum PSI07] emb|CCA81596.1| putative transcription regulator protein, MarR family [blood disease bacterium R229] Length = 157 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 65/134 (48%), Positives = 90/134 (67%) Query: 22 ALRDFYIRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGFAPRTITEAID 81 ALRDFYIRS LDKL+A +G S AR K++ I VR+ DL AFG+APRTITEA+D Sbjct: 16 ALRDFYIRSQSVLDKLLAEKGISWARMKLIYFIRLQGSVRSVDLMRAFGYAPRTITEAVD 75 Query: 82 ALERDGLVQRNGDTTDRRVKYIALTASGKEVLRASEPVKKTFIDGLFAALSEEEIGALTT 141 ALERDGLV+R D DRR K I+LT +G+ + +++EP+++ + L +E AL Sbjct: 76 ALERDGLVERVPDPVDRRAKNISLTRAGEALCKSAEPIRRQLSAEVCGVLDAKEQRALQD 135 Query: 142 VLGKLNHRLAELEE 155 +L ++ RLA +E+ Sbjct: 136 MLTRMTQRLAMIEQ 149 >emb|CAQ17343.1| hypothetical protein RSMK01797 [Ralstonia solanacearum MolK2] Length = 159 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 2/144 (1%) Query: 14 DDSSSAA--EALRDFYIRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGF 71 DDS+ A ALRDFY+RS R LDK++A +G S AR +++ I VR+ DL AFG+ Sbjct: 6 DDSAYAGLTGALRDFYLRSQRVLDKVLAEQGISWARLRLIYCIRLQGSVRSVDLMRAFGY 65 Query: 72 APRTITEAIDALERDGLVQRNGDTTDRRVKYIALTASGKEVLRASEPVKKTFIDGLFAAL 131 APRTITEA+DALERDGLV+R D DRR K I+LT +G+ + +++EP+++ + L Sbjct: 66 APRTITEALDALERDGLVERVPDPVDRRAKNISLTPAGEALCKSAEPIRRQLGAEVCGVL 125 Query: 132 SEEEIGALTTVLGKLNHRLAELEE 155 +E L +L ++ RLA +E+ Sbjct: 126 DAQEQRVLQEMLTRMTQRLATIEQ 149 >ref|ZP_00943795.1| Transcriptional regulator, MarR family [Ralstonia solanacearum UW551] ref|YP_002260685.1| hypothetical protein RSIPO_02483 [Ralstonia solanacearum IPO1609] gb|EAP73646.1| Transcriptional regulator, MarR family [Ralstonia solanacearum UW551] emb|CAQ62625.1| hypothetical protein RSIPO_02483 [Ralstonia solanacearum IPO1609] Length = 159 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 2/144 (1%) Query: 14 DDSSSAA--EALRDFYIRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGF 71 DDS+ A ALRDFY+RS R LDK++A +G S AR +++ I VR+ DL AFG+ Sbjct: 6 DDSAYAGLTGALRDFYLRSQRVLDKVLAEQGISWARLRLIYCIRLQGSVRSVDLMRAFGY 65 Query: 72 APRTITEAIDALERDGLVQRNGDTTDRRVKYIALTASGKEVLRASEPVKKTFIDGLFAAL 131 APRTITEA+DALERDGLV+R D DRR K I+LT +G+ + +++EP+++ + L Sbjct: 66 APRTITEALDALERDGLVERVPDPVDRRAKNISLTPAGEALCKSAEPIRRQLGVEVCGVL 125 Query: 132 SEEEIGALTTVLGKLNHRLAELEE 155 +E L +L ++ RLA +E+ Sbjct: 126 DAQEQRVLQEMLTRMTQRLATIEQ 149