BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3826.p (491 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776577.1| outer membrane protein [Herbaspirillum serop... 723 0.0 ref|YP_001672155.1| RND efflux system outer membrane lipoprotein... 392 e-107 ref|ZP_08387550.1| efflux transporter, outer membrane factor (OM... 387 e-105 ref|YP_001264989.1| RND efflux system outer membrane lipoprotein... 364 1e-98 ref|YP_003559356.1| outer membrane protein OprN [Sphingobium jap... 350 4e-94 >ref|YP_003776577.1| outer membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64669.1| outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 491 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 460/489 (94%), Positives = 476/489 (97%) Query: 1 MINMDKTDSFFPRARLIALAAAALLAGCALGPDYAGPPEAAPQAAHSQQFVRGGDSANSA 60 MINMDKT S FP ARLIALAAAALLAGCALGPDYAGPPEAAPQAAH QFVRGGDSA + Sbjct: 1 MINMDKTSSSFPAARLIALAAAALLAGCALGPDYAGPPEAAPQAAHGGQFVRGGDSATTT 60 Query: 61 APINQWWQGLGDSELNSLIERALQANPNLGVARARLQQSRAGLALEQANAAPSVGASALA 120 APINQWWQGLGD++L SLIERALQANPNLG+ARARLQQSRAGLALEQANAAPSVGASALA Sbjct: 61 APINQWWQGLGDAQLTSLIERALQANPNLGIARARLQQSRAGLALEQANAAPSVGASALA 120 Query: 121 GHARLPPANLGALTGGSSSGNGSPTSANLYSVGFDASWEIDLFGARRRAVEAATATADAA 180 GHARLPPANLGALTGG+SSGNGSPTSANLYS+GFDASWEIDLFG RRRAV+AATATADAA Sbjct: 121 GHARLPPANLGALTGGASSGNGSPTSANLYSLGFDASWEIDLFGGRRRAVQAATATADAA 180 Query: 181 QASLADVQVSLAAEVANAYISLRDRQLRLSLGQEAVQAQEQMLQLTGQRVERGTASSLDQ 240 QASLADVQVSLAAEVANAYISLRDRQ RL+LGQ+AVQAQEQMLQLTGQRVERGTASSLDQ Sbjct: 181 QASLADVQVSLAAEVANAYISLRDRQQRLALGQQAVQAQEQMLQLTGQRVERGTASSLDQ 240 Query: 241 LRVQNQLDASRADLVPLQAERDAFLNQLATLLGQEPGTLDSELAATAPVPLPPQQVAVGD 300 LR+QNQLDASRADLVPLQA+RDA+LNQLATLLGQEPGTLD ELAAT PVPLPPQQVAVGD Sbjct: 241 LRIQNQLDASRADLVPLQADRDAYLNQLATLLGQEPGTLDGELAATVPVPLPPQQVAVGD 300 Query: 301 PVSLLRRRPDVRAAERTLAADTAKIGQAEAARYPSLKLFGVIGLGGTHPSDLTRLDDFAA 360 PVSLLRRRPDVRAAERTLAADTAKIGQAEAARYPSLKLFGVIGLGGTHPSDLTRLDDFAA Sbjct: 301 PVSLLRRRPDVRAAERTLAADTAKIGQAEAARYPSLKLFGVIGLGGTHPSDLTRLDDFAA 360 Query: 361 LGAPMLSWNFLDFGRAKARVTQAEQVRDEAEMKYRQSVLEALRDAEDALSRFRYGRVSVA 420 LGAPMLSWNFLDFGRAKARVTQAE+VRDEAEMKYRQSVLEALRDAEDALSRFRYGRVSVA Sbjct: 361 LGAPMLSWNFLDFGRAKARVTQAERVRDEAEMKYRQSVLEALRDAEDALSRFRYGRVSVA 420 Query: 421 TIARSKVSADRALVLARQRYQAGTGTLIEVLDTTRQQITAQQNLLQAEANLTRSFVGIQK 480 TIAR+K+SADRAL LARQRYQAGTGTLIEVLDTTRQQITAQQNLLQAEANLTRSFVGIQK Sbjct: 421 TIARTKLSADRALALARQRYQAGTGTLIEVLDTTRQQITAQQNLLQAEANLTRSFVGIQK 480 Query: 481 ALGLGWSEE 489 ALGLGWS+E Sbjct: 481 ALGLGWSDE 489 >ref|YP_001672155.1| RND efflux system outer membrane lipoprotein [Caulobacter sp. K31] gb|ABZ74496.1| RND efflux system, outer membrane lipoprotein, NodT family [Caulobacter sp. K31] Length = 482 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 257/470 (54%), Positives = 328/470 (69%), Gaps = 6/470 (1%) Query: 19 LAAAALLAGCALGPDYAGPPEAAPQAAHSQQFVRGGDSANSAAP-INQWWQGLGDSELNS 77 A +L+ C +GPDY GPP+ S +FVR D+A A P + +WW+ L D L+ Sbjct: 9 FALLPVLSACTVGPDYVGPPDKGI----SSRFVRMEDTAVIATPLVARWWETLDDPILDG 64 Query: 78 LIERALQANPNLGVARARLQQSRAGLALEQANAAPSVGASALAGHARLPPANLGALTGGS 137 + ERAL+ANPN+ ++ARL+Q+RA L +E+ANAAP+V A ALAGH R+P + GA Sbjct: 65 IEERALRANPNMAASQARLRQARAMLRIERANAAPNVAAGALAGHGRVPESGSGAAGAMI 124 Query: 138 SSGNGS-PTSANLYSVGFDASWEIDLFGARRRAVEAATATADAAQASLADVQVSLAAEVA 196 + G+ S +LY+ FDASWEIDLFG RRR VEAATATA AA+A+LAD QVSL AEVA Sbjct: 125 PALVGTDERSFDLYTAAFDASWEIDLFGGRRRGVEAATATAQAAEATLADAQVSLTAEVA 184 Query: 197 NAYISLRDRQLRLSLGQEAVQAQEQMLQLTGQRVERGTASSLDQLRVQNQLDASRADLVP 256 +AYI LRD Q R+ L + +V+ Q+QML LT Q+ ERG AS+LD R+ Q + + A + P Sbjct: 185 HAYIGLRDTQKRIVLAKRSVELQQQMLDLTRQQFERGVASALDVERLSMQFENTNARVAP 244 Query: 257 LQAERDAFLNQLATLLGQEPGTLDSELAATAPVPLPPQQVAVGDPVSLLRRRPDVRAAER 316 L A+ + F+N LA L G++PG LD+ L P PLPP VA+GDP ++LRRRPDVRAAER Sbjct: 245 LVAQAEGFMNALAWLCGEQPGALDAILDPPRPAPLPPPAVAIGDPEAMLRRRPDVRAAER 304 Query: 317 TLAADTAKIGQAEAARYPSLKLFGVIGLGGTHPSDLTRLDDFAALGAPMLSWNFLDFGRA 376 LAADTA+IG AEAAR+P L GVIG+GGT PSDLT LDDF ALGAP L W+ L+FGR Sbjct: 305 RLAADTARIGVAEAARFPRLSWMGVIGIGGTQPSDLTHLDDFVALGAPTLQWSVLNFGRV 364 Query: 377 KARVTQAEQVRDEAEMKYRQSVLEALRDAEDALSRFRYGRVSVATIARSKVSADRALVLA 436 + ++ Q E RDEAE Y +VL ALRD EDAL+RFR GR +VA +AR+K SADR+ L Sbjct: 365 QGQIRQRESARDEAEALYDAAVLGALRDTEDALARFRAGRATVAILARAKASADRSANLT 424 Query: 437 RQRYQAGTGTLIEVLDTTRQQITAQQNLLQAEANLTRSFVGIQKALGLGW 486 +Q Y+AG +LI+ L R +I A+ L A A LT +V +QKALGLGW Sbjct: 425 QQNYRAGRASLIDALGAERHRIDAEDGLSAATAGLTADYVALQKALGLGW 474 >ref|ZP_08387550.1| efflux transporter, outer membrane factor (OMF) lipo, NodT family protein [Sphingomonas sp. S17] gb|EGI56219.1| efflux transporter, outer membrane factor (OMF) lipo, NodT family protein [Sphingomonas sp. S17] Length = 497 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 261/478 (54%), Positives = 325/478 (67%), Gaps = 17/478 (3%) Query: 26 AGCALGPDYAGPPEAAPQAAHSQQ-FVRGGDSANSAAP-INQWWQGLGDSELNSLIERAL 83 C +GP+YAGPP+ AA F R S + AP + +WW L D L L E+AL Sbjct: 14 GACTVGPNYAGPPKGVGSAAQPPAGFARADASVATTAPAVAEWWTTLNDPMLTWLEEQAL 73 Query: 84 QANPNLGVARARLQQSRAGLALEQANAAPSVGASALAGHARLPPANLGALTGGSSSGNGS 143 ANPN+ VA+ARL+Q+RA L LE+AN AP+ ASA HA LP NLG G Sbjct: 74 AANPNVAVAQARLKQARASLRLERANQAPNANASATYLHADLPGINLGGGQQQGGGEQGG 133 Query: 144 PT---------------SANLYSVGFDASWEIDLFGARRRAVEAATATADAAQASLADVQ 188 S + +++GFDASWEIDLFG +RR VEAA A A AA+A++AD Q Sbjct: 134 GQGGANGGAAGGGSGGQSLDFFNLGFDASWEIDLFGGQRRTVEAARANAAAAEANVADAQ 193 Query: 189 VSLAAEVANAYISLRDRQLRLSLGQEAVQAQEQMLQLTGQRVERGTASSLDQLRVQNQLD 248 VSL+A+VA AY+ LRD Q RL L +EA + Q L LT QR GTAS L+ R++NQ++ Sbjct: 194 VSLSADVAQAYVGLRDAQQRLILAREASRMQRDTLNLTQQRFNNGTASQLEVERLRNQVE 253 Query: 249 ASRADLVPLQAERDAFLNQLATLLGQEPGTLDSELAATAPVPLPPQQVAVGDPVSLLRRR 308 ++ A ++PL A + +LN LA L+G+ PGTLD L APVPLPP QVAVGDP SLL+RR Sbjct: 254 STDAQILPLSASVETYLNALAILIGEAPGTLDQRLGQAAPVPLPPAQVAVGDPTSLLQRR 313 Query: 309 PDVRAAERTLAADTAKIGQAEAARYPSLKLFGVIGLGGTHPSDLTRLDDFAALGAPMLSW 368 PD+RAAER LAA TA+IG AEAA++P L L G+IG+GGT LT LD+ LGAPML W Sbjct: 314 PDIRAAERRLAAQTARIGVAEAAKFPRLNLMGIIGIGGTSLDALTDLDNLVTLGAPMLQW 373 Query: 369 NFLDFGRAKARVTQAEQVRDEAEMKYRQSVLEALRDAEDALSRFRYGRVSVATIARSKVS 428 N L+FGRA ARV QAE RDEAE +YR +VL ALRDAEDAL+RFR R +VAT+AR+K S Sbjct: 374 NVLNFGRANARVGQAEGARDEAEAQYRGAVLSALRDAEDALARFRARRNTVATLARAKAS 433 Query: 429 ADRALVLARQRYQAGTGTLIEVLDTTRQQITAQQNLLQAEANLTRSFVGIQKALGLGW 486 ADR+ VL +QRY+AG TLI+ LD RQ+++AQQ+L QA A LT +V +QKALGLGW Sbjct: 434 ADRSAVLMQQRYRAGAATLIDTLDAERQRVSAQQSLSQAVAGLTNDYVALQKALGLGW 491 >ref|YP_001264989.1| RND efflux system outer membrane lipoprotein [Sphingomonas wittichii RW1] gb|ABQ70851.1| RND efflux system, outer membrane lipoprotein, NodT family [Sphingomonas wittichii RW1] Length = 480 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 254/473 (53%), Positives = 318/473 (67%), Gaps = 5/473 (1%) Query: 19 LAAAALLAGCALGPDYAGPPEAAPQAAHSQQFVRGGDSANSAAPINQWWQGLGDSELNSL 78 L LLAGC +GPDY GP A + D+A A WW LGD L+ L Sbjct: 7 LVPMTLLAGCTVGPDYRGPVSAGAAPPPAAFARADRDAAPQAPAAAAWWTALGDPVLDEL 66 Query: 79 IERALQANPNLGVARARLQQSRAGLALEQANAAPSVGASALAGHARLPPANLGALTGGSS 138 RAL +P++ +A+ARL Q+R+ L LE+AN+ P ASA+ HAR+P +LG+ Sbjct: 67 ERRALAGSPSVAIAQARLNQARSALGLERANSLPKANASAVYVHARVPGVDLGSSNQNGG 126 Query: 139 SGNGSPT-----SANLYSVGFDASWEIDLFGARRRAVEAATATADAAQASLADVQVSLAA 193 +G G T S N Y+VGFDASWEIDLFG +RR +EAA A+ AA+A+LAD +VSLAA Sbjct: 127 TGGGGGTGEDQESLNFYNVGFDASWEIDLFGGQRRNLEAARASLGAAEANLADARVSLAA 186 Query: 194 EVANAYISLRDRQLRLSLGQEAVQAQEQMLQLTGQRVERGTASSLDQLRVQNQLDASRAD 253 EVA AY++LRDRQ RL L +E+ + Q + LT +R +RG AS+LD R + Q++ S A Sbjct: 187 EVAQAYVALRDRQHRLELARESAEKQRAIYDLTAERRDRGAASTLDVERQRGQVEQSNAA 246 Query: 254 LVPLQAERDAFLNQLATLLGQEPGTLDSELAATAPVPLPPQQVAVGDPVSLLRRRPDVRA 313 ++PL A+ DA+ N LATL G+ PG LD LAA A VPLPP +VAVGDP +LL+RRPDVRA Sbjct: 247 VLPLGADYDAYRNALATLTGEVPGALDDLLAAPAAVPLPPAEVAVGDPAALLQRRPDVRA 306 Query: 314 AERTLAADTAKIGQAEAARYPSLKLFGVIGLGGTHPSDLTRLDDFAALGAPMLSWNFLDF 373 AER LAA TAKIG A+AA +P L G+IGLGGT D+ D AA+ P LSWNFLDF Sbjct: 307 AERKLAASTAKIGVAKAAAFPRLSFLGLIGLGGTSIGDVVDPDKLAAVAVPQLSWNFLDF 366 Query: 374 GRAKARVTQAEQVRDEAEMKYRQSVLEALRDAEDALSRFRYGRVSVATIARSKVSADRAL 433 GR ARV QAE RDEA +YR +VL ALRDAEDALSR+ R +V T ARSK SAD + Sbjct: 367 GRNAARVGQAEGARDEAAAQYRSAVLVALRDAEDALSRYGARRQAVVTAARSKASADTSA 426 Query: 434 VLARQRYQAGTGTLIEVLDTTRQQITAQQNLLQAEANLTRSFVGIQKALGLGW 486 L RQR+ AGT T IE+LD RQ+I A Q L+QA+A +T F+ ++KALGLGW Sbjct: 427 TLVRQRFDAGTATRIELLDAERQRIAADQALIQAKAQMTTDFIALEKALGLGW 479 >ref|YP_003559356.1| outer membrane protein OprN [Sphingobium japonicum UT26S] dbj|BAI98624.1| outer membrane protein OprN [Sphingobium japonicum UT26S] Length = 479 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 268/469 (57%), Positives = 332/469 (70%), Gaps = 1/469 (0%) Query: 18 ALAAAALLAGCALGPDYAGPPEAAPQAAHSQQFVRGGDSANSAAPINQWWQGLGDSELNS 77 A+ A LA C GPDY GP A P + +Q D++ A WW LGD L++ Sbjct: 11 AILALLALAACTAGPDYHGPEAARPVSPAAQFARAPTDASAQAPASAAWWTALGDPVLDA 70 Query: 78 LIERALQANPNLGVARARLQQSRAGLALEQANAAPSVGASALAGHARLPPANLGALTGGS 137 L RAL ANP + VA AR++Q+RA L E+ANA P+V ASAL HA +P +LG+ S Sbjct: 71 LESRALAANPGVAVAEARVRQARASLRTERANALPNVNASALYVHATVPGVDLGSSEEDS 130 Query: 138 SSGNGSPTSANLYSVGFDASWEIDLFGARRRAVEAATATADAAQASLADVQVSLAAEVAN 197 S G G S N Y++GFDASWE+DL+G RRR +EAA A +AAQA++AD QVSL AE+A Sbjct: 131 SEG-GDSQSLNFYNLGFDASWEVDLWGGRRRGMEAARAEVEAAQANVADAQVSLTAEIAQ 189 Query: 198 AYISLRDRQLRLSLGQEAVQAQEQMLQLTGQRVERGTASSLDQLRVQNQLDASRADLVPL 257 AY++LRDRQ R++L Q+A Q +ML+LT QR +GTAS+L+ + +NQL+ S A L+PL Sbjct: 190 AYVNLRDRQQRIALAQQAAARQREMLRLTEQRHAQGTASALEVEQQRNQLEQSDAALLPL 249 Query: 258 QAERDAFLNQLATLLGQEPGTLDSELAATAPVPLPPQQVAVGDPVSLLRRRPDVRAAERT 317 AERDA+LN LATL G+ PG LD+ LAA APVPLPP QVAVGDP +LLRRRPD+RAAER Sbjct: 250 SAERDAYLNALATLAGEAPGALDAMLAAPAPVPLPPAQVAVGDPAALLRRRPDIRAAERR 309 Query: 318 LAADTAKIGQAEAARYPSLKLFGVIGLGGTHPSDLTRLDDFAALGAPMLSWNFLDFGRAK 377 AA TA+IG AEAAR+PSL G+IG+GGT P DL LD AA+ P LSW+FLDFGR Sbjct: 310 FAAATARIGVAEAARFPSLSFMGLIGIGGTDPGDLVDLDTLAAIAMPRLSWSFLDFGRNA 369 Query: 378 ARVTQAEQVRDEAEMKYRQSVLEALRDAEDALSRFRYGRVSVATIARSKVSADRALVLAR 437 ARV QAE RDEA +YRQ+VL ALRD+EDALSRF R+SVA+ ARSK SADRA L R Sbjct: 370 ARVGQAEGARDEAAAQYRQAVLNALRDSEDALSRFGARRLSVASAARSKASADRAAALVR 429 Query: 438 QRYQAGTGTLIEVLDTTRQQITAQQNLLQAEANLTRSFVGIQKALGLGW 486 QR++AGT T I++LD RQ + A Q L Q A +T ++ +QKALGLGW Sbjct: 430 QRFEAGTATRIQLLDAERQSLAAAQALTQGTAAMTADYIALQKALGLGW 478