BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3822.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776574.1| LysR family transcription regulator protein ... 558 e-157 ref|YP_999448.1| LysR family transcriptional regulator [Verminep... 434 e-120 ref|ZP_02468217.1| transcriptional regulator, LysR family protei... 360 1e-97 ref|ZP_02360301.1| regulatory protein, LysR:LysR, substrate-bind... 357 9e-97 ref|XP_002537971.1| HTH-type transcriptional regulator cynR, put... 340 1e-91 >ref|YP_003776574.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64666.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 290/303 (95%), Positives = 298/303 (98%) Query: 1 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEETLDTVLFERRPRGM 60 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLE+ LDTVLFERRPRGM Sbjct: 1 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGM 60 Query: 61 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK Sbjct: 61 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120 Query: 121 KYPGFVFQLFVGAPAVVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALVMRNDHPL 180 KYPGFVFQLFVGAPA+VSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIAL+MR DHPL Sbjct: 121 KYPGFVFQLFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHPL 180 Query: 181 ARFRHVSLGQLKPYPLALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDND 240 ARFR +S+GQLKPYP+ALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDND Sbjct: 181 ARFRQISVGQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDND 240 Query: 241 ALSITGDVTVRYRIERGELTMRPIRDCPSDGRFVEVQTLAGRTLPRSVEIFLDYLVAELS 300 ALSITG+VTVRYRI GELTMRPIRDCP+DGRFVEVQTLAGRTLPRSVEIFLDYLVAELS Sbjct: 241 ALSITGEVTVRYRIATGELTMRPIRDCPADGRFVEVQTLAGRTLPRSVEIFLDYLVAELS 300 Query: 301 KDL 303 KDL Sbjct: 301 KDL 303 >ref|YP_999448.1| LysR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM60430.1| transcriptional regulator, LysR family [Verminephrobacter eiseniae EF01-2] Length = 305 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 221/301 (73%), Positives = 261/301 (86%) Query: 1 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEETLDTVLFERRPRGM 60 MKS+ LQD ALRYFLEVVR GSI+ ASQRLNVASSAISRQISSLE LDTVLFERRPRGM Sbjct: 1 MKSEYLQDIALRYFLEVVRSGSIAAASQRLNVASSAISRQISSLEGLLDTVLFERRPRGM 60 Query: 61 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120 VLS GGEMLAAHA+K+ LE+DRVVADL ALKGLR GRVR++ASEG +DF+PRLI AFQ+ Sbjct: 61 VLSVGGEMLAAHAQKVMLESDRVVADLLALKGLRRGRVRVAASEGLGVDFVPRLIRAFQQ 120 Query: 121 KYPGFVFQLFVGAPAVVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALVMRNDHPL 180 +YP FQ++VG PA+VSR VR+GNADIG+TF RLPEP IK+V+++P P+ L+MRN HPL Sbjct: 121 QYPAIQFQVYVGPPALVSRHVRDGNADIGVTFNRLPEPFIKIVYQKPAPVLLLMRNGHPL 180 Query: 181 ARFRHVSLGQLKPYPLALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDND 240 ++F+ V+L QL PYPLALPDP TTLRQLFD+ACS QQ++ EP +TSNYIQ+LHNY+L+ D Sbjct: 181 SKFKSVALSQLHPYPLALPDPDTTLRQLFDLACSHQQLLFEPALTSNYIQTLHNYLLEGD 240 Query: 241 ALSITGDVTVRYRIERGELTMRPIRDCPSDGRFVEVQTLAGRTLPRSVEIFLDYLVAELS 300 ALSITG+VTVRYRI RGELTM PIRD +GR+VEVQTL+GRTLPR EIFL +L+ EL+ Sbjct: 241 ALSITGEVTVRYRIARGELTMVPIRDRVLNGRYVEVQTLSGRTLPRIAEIFLAHLLGELN 300 Query: 301 K 301 K Sbjct: 301 K 301 >ref|ZP_02468217.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 323 Score = 360 bits (924), Expect = 1e-97, Method: Composition-based stats. Identities = 189/301 (62%), Positives = 234/301 (77%) Query: 1 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEETLDTVLFERRPRGM 60 MK QLQDTALRYFL VVR GSISEAS RLNVA SAISRQI+ LE+ L T LFERR RGM Sbjct: 1 MKHDQLQDTALRYFLAVVRAGSISEASARLNVAGSAISRQIAHLEQVLGTPLFERRARGM 60 Query: 61 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120 V SA GEMLAA+A + LEADR+V D+ AL+GLR G+VR++ SEGFAI+F+P I F++ Sbjct: 61 VASAAGEMLAAYAFRTELEADRLVQDIDALQGLRRGQVRIAMSEGFAIEFVPHAIADFRR 120 Query: 121 KYPGFVFQLFVGAPAVVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALVMRNDHPL 180 YPG VFQ V APA V+R+V++G AD+G+TF+R PE +IKV HRQ P+ VMR DHPL Sbjct: 121 TYPGIVFQAAVCAPADVTRRVKKGEADVGVTFSRTPESDIKVEHRQGAPVMAVMRGDHPL 180 Query: 181 ARFRHVSLGQLKPYPLALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDND 240 ARF VS+ Q+ YPLALPDP+TT+RQLFD+ SRQ ++IEPVM SN I +LHN+ + D Sbjct: 181 ARFGQVSVLQMSAYPLALPDPSTTIRQLFDVVSSRQNLMIEPVMVSNNIVALHNFAIACD 240 Query: 241 ALSITGDVTVRYRIERGELTMRPIRDCPSDGRFVEVQTLAGRTLPRSVEIFLDYLVAELS 300 A+SI+G+VTVR R RGEL +RPI D D R VE+QTL GRTLP+ V++FL++L A L+ Sbjct: 241 AISISGEVTVRSRQARGELAVRPIADSGMDARAVELQTLVGRTLPKVVQLFLEFLRARLA 300 Query: 301 K 301 + Sbjct: 301 Q 301 >ref|ZP_02360301.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia oklahomensis EO147] ref|ZP_02367421.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia oklahomensis C6786] Length = 312 Score = 357 bits (917), Expect = 9e-97, Method: Composition-based stats. Identities = 189/302 (62%), Positives = 235/302 (77%) Query: 1 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEETLDTVLFERRPRGM 60 MK QLQ+TALRYFLEVVR GSISEAS RL+VA SAISRQI+ LE+ L T LFERR RGM Sbjct: 1 MKHHQLQETALRYFLEVVRAGSISEASARLSVAGSAISRQIAHLEQVLGTPLFERRSRGM 60 Query: 61 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120 V SA GEMLAA+A + LEADR+V D+ AL+GLR G+VR++ SEGFAI+F+P I F++ Sbjct: 61 VASAAGEMLAAYAFRTELEADRLVQDIDALQGLRRGQVRIAMSEGFAIEFVPHAIADFRR 120 Query: 121 KYPGFVFQLFVGAPAVVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALVMRNDHPL 180 YPG VFQ V APA V+R+V++G AD+G+TF+R PE +IKV HRQ P+ VMR DHPL Sbjct: 121 TYPGIVFQAAVCAPADVTRRVKKGEADVGVTFSRTPESDIKVEHRQSAPVMAVMRGDHPL 180 Query: 181 ARFRHVSLGQLKPYPLALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDND 240 ARF VS+ Q+ YPLALPDP+TT+RQLFD+ SRQ + IEPVM SN I +LHN+ + +D Sbjct: 181 ARFERVSVSQMCAYPLALPDPSTTIRQLFDVVSSRQNLTIEPVMVSNNIVALHNFAIASD 240 Query: 241 ALSITGDVTVRYRIERGELTMRPIRDCPSDGRFVEVQTLAGRTLPRSVEIFLDYLVAELS 300 A+SI+G+VTVR R RGEL +RPI D D R VE+QTL GRTLP+ V++FL++L A L+ Sbjct: 241 AVSISGEVTVRSRQARGELAVRPIADRGMDARAVELQTLVGRTLPKVVQLFLEFLRARLA 300 Query: 301 KD 302 D Sbjct: 301 SD 302 >ref|XP_002537971.1| HTH-type transcriptional regulator cynR, putative [Ricinus communis] gb|EEF24411.1| HTH-type transcriptional regulator cynR, putative [Ricinus communis] Length = 187 Score = 340 bits (873), Expect = 1e-91, Method: Composition-based stats. Identities = 180/187 (96%), Positives = 184/187 (98%) Query: 1 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEETLDTVLFERRPRGM 60 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLE+ LDTVLFERRPRGM Sbjct: 1 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGM 60 Query: 61 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK Sbjct: 61 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120 Query: 121 KYPGFVFQLFVGAPAVVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALVMRNDHPL 180 KYPGFVFQLFVGAPA+VSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIAL+MR DHPL Sbjct: 121 KYPGFVFQLFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQPGPIALIMRKDHPL 180 Query: 181 ARFRHVS 187 ARFR +S Sbjct: 181 ARFRQIS 187