BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3820.p (512 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776573.1| dipeptide ABC transporter periplasmic protei... 951 0.0 ref|YP_999447.1| extracellular solute-binding protein [Vermineph... 832 0.0 ref|ZP_02367420.1| extracellular solute-binding protein, family ... 766 0.0 ref|ZP_02468218.1| extracellular solute-binding protein, family ... 761 0.0 ref|ZP_02360302.1| extracellular solute-binding protein, family ... 757 0.0 >ref|YP_003776573.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64665.1| ABC-type dipeptide transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 512 Score = 951 bits (2459), Expect = 0.0, Method: Composition-based stats. Identities = 487/512 (95%), Positives = 501/512 (97%) Query: 1 MNALPKSLMRWSRCAVFVAGAMSAMAAHAGKANDTLIYASDSEVENISQYHNNLREGVIL 60 MNAL KSL+ WSRCAV AGAM+A+AAHAGKANDTL+YASDSEVENISQYHNNLREGVIL Sbjct: 1 MNALHKSLLGWSRCAVLAAGAMTAVAAHAGKANDTLVYASDSEVENISQYHNNLREGVIL 60 Query: 61 AHLIWDTLIYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFN 120 AHLIWDTLIYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFN Sbjct: 61 AHLIWDTLIYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFN 120 Query: 121 YAVSAESKAVTRQNTDWIKSVDKLGDYQVRINLKGPFPAALEYLAGPLPIYPAAYFKKVG 180 YAVS ESKAVTRQNTDWIKSVDKL DY+VRINLKGPFPAALEYLAGPLPIYPAAYFKKVG Sbjct: 121 YAVSPESKAVTRQNTDWIKSVDKLADYKVRINLKGPFPAALEYLAGPLPIYPAAYFKKVG 180 Query: 181 LEGFSKAPIGTGPYKVTSVTPGQGVTLVKNGNYFKDSPQGQPSIGNIKFVVIPDPETRAA 240 LEGFSKAPIGTGPYKVTSVTPGQGVTLVKN YFKDSPQGQP+IGNIKFVVIPDPETRAA Sbjct: 181 LEGFSKAPIGTGPYKVTSVTPGQGVTLVKNPGYFKDSPQGQPTIGNIKFVVIPDPETRAA 240 Query: 241 QLMTGAIDWIWRVPPDQADSLKTNPKLTVQSGETMRVGFITLDATGTSAPNSPFKDVRVR 300 QLMTGAIDWIWRVPPDQADSLKTNPKL VQSGETMR+GFITLD TGTSAPNSPFKDVRVR Sbjct: 241 QLMTGAIDWIWRVPPDQADSLKTNPKLAVQSGETMRIGFITLDTTGTSAPNSPFKDVRVR 300 Query: 301 QAVNHAINRKGYAENLMRGGSQPVYTACFRTQFGCDSNAAIKFDYNPAKAKELLAAAGYP 360 QAVNHAINRKGYA+NLMRGGSQPVYTACFRTQFGCDSNAAIK+DYNPAKAKELLAAAGYP Sbjct: 301 QAVNHAINRKGYADNLMRGGSQPVYTACFRTQFGCDSNAAIKYDYNPAKAKELLAAAGYP 360 Query: 361 NGFDTDIYAYREREVAEAIIGDLRKVGIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFS 420 NGFDTDIYAYRERE+AEAIIGDLRKVGIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFS Sbjct: 361 NGFDTDIYAYREREIAEAIIGDLRKVGIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFS 420 Query: 421 MNDTSAFAGVYFKGGADDITKDPQLQQFLQTADTSIDPAVRKANYTKAQELISKQAYVAP 480 MNDTSAFAGVYFKGGADDITKDPQLQQ+LQTADTSIDPAVRKANY+KAQELISKQAYVAP Sbjct: 421 MNDTSAFAGVYFKGGADDITKDPQLQQYLQTADTSIDPAVRKANYSKAQELISKQAYVAP 480 Query: 481 MFSYSTFYAFNAQLKFQGYPDELPRFYEASWK 512 MFSYST+YA+NAQL FQGYPDELPRFYEASWK Sbjct: 481 MFSYSTYYAYNAQLNFQGYPDELPRFYEASWK 512 >ref|YP_999447.1| extracellular solute-binding protein [Verminephrobacter eiseniae EF01-2] gb|ABM60429.1| extracellular solute-binding protein, family 5 [Verminephrobacter eiseniae EF01-2] Length = 521 Score = 832 bits (2149), Expect = 0.0, Method: Composition-based stats. Identities = 391/486 (80%), Positives = 443/486 (91%) Query: 27 AHAGKANDTLIYASDSEVENISQYHNNLREGVILAHLIWDTLIYRDPKTNEYKPQLATAW 86 A AGKANDTL+YASDSE NISQYHNN+REGVILAHLIWDTL++RDP+T +YKPQLA+AW Sbjct: 36 ALAGKANDTLVYASDSEAPNISQYHNNVREGVILAHLIWDTLVWRDPRTGDYKPQLASAW 95 Query: 87 KWESPTALVLDLRQGVQFQNGDKFSADDVVFTFNYAVSAESKAVTRQNTDWIKSVDKLGD 146 KWESPTALV+DLRQGVQFQNGD F+A+DV FTFNYAVS+ES+ +TRQN DWIKSVDKLGD Sbjct: 96 KWESPTALVMDLRQGVQFQNGDPFTAEDVAFTFNYAVSSESRVITRQNVDWIKSVDKLGD 155 Query: 147 YQVRINLKGPFPAALEYLAGPLPIYPAAYFKKVGLEGFSKAPIGTGPYKVTSVTPGQGVT 206 Y+VRINLK PFPAALEYLAGPLPIYP AYF+KVGLEGF+KAPIGTGPYKV SVTPG+GV+ Sbjct: 156 YKVRINLKQPFPAALEYLAGPLPIYPGAYFRKVGLEGFAKAPIGTGPYKVVSVTPGRGVS 215 Query: 207 LVKNGNYFKDSPQGQPSIGNIKFVVIPDPETRAAQLMTGAIDWIWRVPPDQADSLKTNPK 266 +V+NGNYFKDSPQGQP IGNIKFVVIPDPETR+AQLMTGAIDWIWRVP DQA+SLK+ P Sbjct: 216 MVRNGNYFKDSPQGQPKIGNIKFVVIPDPETRSAQLMTGAIDWIWRVPADQAESLKSTPG 275 Query: 267 LTVQSGETMRVGFITLDATGTSAPNSPFKDVRVRQAVNHAINRKGYAENLMRGGSQPVYT 326 +TVQSGETMRVGF+ +DA G S+P+SPFKDVRVRQAVNHAINR+G A+NL+RGGS+PVYT Sbjct: 276 ITVQSGETMRVGFLVIDAAGNSSPHSPFKDVRVRQAVNHAINRQGIADNLVRGGSKPVYT 335 Query: 327 ACFRTQFGCDSNAAIKFDYNPAKAKELLAAAGYPNGFDTDIYAYREREVAEAIIGDLRKV 386 ACFRTQFGCD + +DYNPAKAKELL AAGY NGFDTD+YAYRERE AEAI+GDL KV Sbjct: 336 ACFRTQFGCDDKVVVHYDYNPAKAKELLRAAGYANGFDTDLYAYREREFAEAIVGDLHKV 395 Query: 387 GIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFSMNDTSAFAGVYFKGGADDITKDPQLQ 446 GIRARLHYMK A+Q EYR GK PM+FY+WGS+S+NDTSAF GVYFKG +DDI KDPQL+ Sbjct: 396 GIRARLHYMKHDAMQVEYRGGKAPMTFYAWGSYSINDTSAFTGVYFKGSSDDIVKDPQLR 455 Query: 447 QFLQTADTSIDPAVRKANYTKAQELISKQAYVAPMFSYSTFYAFNAQLKFQGYPDELPRF 506 Q+L+TADTS DPAVRK NY KA LIS+QAY+APMFSYST+YA ++ L+FQGYPDELPRF Sbjct: 456 QWLETADTSTDPAVRKTNYAKALALISRQAYLAPMFSYSTYYAHSSALRFQGYPDELPRF 515 Query: 507 YEASWK 512 +EASWK Sbjct: 516 HEASWK 521 >ref|ZP_02367420.1| extracellular solute-binding protein, family 5 [Burkholderia oklahomensis C6786] Length = 514 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 372/504 (73%), Positives = 428/504 (84%) Query: 9 MRWSRCAVFVAGAMSAMAAHAGKANDTLIYASDSEVENISQYHNNLREGVILAHLIWDTL 68 +R+ C + AAHAG+ANDTL+YASDSE ENIS YHNNLREGVI+AH+ WDTL Sbjct: 11 LRFPACTAVALLLSLSPAAHAGRANDTLVYASDSEPENISPYHNNLREGVIIAHMAWDTL 70 Query: 69 IYRDPKTNEYKPQLATAWKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFNYAVSAESK 128 IYRDPKT YKP LATAWKWESPT+L++DLR+ V F NGDKF+ADDVVFTFNY V+ +SK Sbjct: 71 IYRDPKTGAYKPALATAWKWESPTSLIVDLRRDVTFHNGDKFTADDVVFTFNYVVAPDSK 130 Query: 129 AVTRQNTDWIKSVDKLGDYQVRINLKGPFPAALEYLAGPLPIYPAAYFKKVGLEGFSKAP 188 VTRQNTDWI+S +K GDYQVRI LK PFPAALEYL+GP PIYP AYFKKVGL+GF KAP Sbjct: 131 VVTRQNTDWIQSAEKTGDYQVRIRLKAPFPAALEYLSGPTPIYPTAYFKKVGLQGFGKAP 190 Query: 189 IGTGPYKVTSVTPGQGVTLVKNGNYFKDSPQGQPSIGNIKFVVIPDPETRAAQLMTGAID 248 +GTGPYK+T+VTPG GVT+VKN NYFKDSP GQP IG ++FVVIPDPETRAAQLMTGA+D Sbjct: 191 VGTGPYKITAVTPGVGVTMVKNPNYFKDSPLGQPKIGTVRFVVIPDPETRAAQLMTGAVD 250 Query: 249 WIWRVPPDQADSLKTNPKLTVQSGETMRVGFITLDATGTSAPNSPFKDVRVRQAVNHAIN 308 WIWRVP DQADSLK P LTVQSGETMRVG++++DA G SAPNSPFKD RVRQAVN+AIN Sbjct: 251 WIWRVPADQADSLKAMPNLTVQSGETMRVGYLSMDAAGASAPNSPFKDARVRQAVNYAIN 310 Query: 309 RKGYAENLMRGGSQPVYTACFRTQFGCDSNAAIKFDYNPAKAKELLAAAGYPNGFDTDIY 368 R A+NL+RGGSQPVY CFRTQFGCD++ +K+DYNPAKA+ELL AAGYPNGFDTD+Y Sbjct: 311 RGALAKNLVRGGSQPVYAPCFRTQFGCDTSGVVKYDYNPAKARELLKAAGYPNGFDTDLY 370 Query: 369 AYREREVAEAIIGDLRKVGIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFSMNDTSAFA 428 AYRERE AEA+IGDLRKVGI ARLHY+++AAL+T RSGKTP++F +WGSFS+ND SAF Sbjct: 371 AYREREYAEAMIGDLRKVGINARLHYLQYAALRTAQRSGKTPLTFQAWGSFSVNDASAFV 430 Query: 429 GVYFKGGADDITKDPQLQQFLQTADTSIDPAVRKANYTKAQELISKQAYVAPMFSYSTFY 488 GVYFKGG DD KD ++++L ADTS DPAVRKANY KA IS+QAY AP+FSYST Y Sbjct: 431 GVYFKGGPDDSAKDATVEKWLDAADTSNDPAVRKANYAKALTRISEQAYWAPLFSYSTNY 490 Query: 489 AFNAQLKFQGYPDELPRFYEASWK 512 A+ + L F+ YPDELPRFYEASWK Sbjct: 491 AYTSALNFKAYPDELPRFYEASWK 514 >ref|ZP_02468218.1| extracellular solute-binding protein, family 5 [Burkholderia thailandensis MSMB43] Length = 514 Score = 761 bits (1966), Expect = 0.0, Method: Composition-based stats. Identities = 369/487 (75%), Positives = 423/487 (86%) Query: 26 AAHAGKANDTLIYASDSEVENISQYHNNLREGVILAHLIWDTLIYRDPKTNEYKPQLATA 85 AAHAG+ANDTL+YASDSE ENIS YHNNLREGVI+AH+ WDTLIYRDPKT YKP+LATA Sbjct: 28 AAHAGRANDTLVYASDSEPENISPYHNNLREGVIVAHMAWDTLIYRDPKTGAYKPELATA 87 Query: 86 WKWESPTALVLDLRQGVQFQNGDKFSADDVVFTFNYAVSAESKAVTRQNTDWIKSVDKLG 145 WKWESPT+LV+DLR+GV F NGDKF+ADDVVFTFNY V+ +SK VTRQNTDWI+S +K G Sbjct: 88 WKWESPTSLVVDLRRGVTFHNGDKFTADDVVFTFNYVVAPDSKVVTRQNTDWIQSAEKTG 147 Query: 146 DYQVRINLKGPFPAALEYLAGPLPIYPAAYFKKVGLEGFSKAPIGTGPYKVTSVTPGQGV 205 DYQVRI LK PFPAALEYL+GP PIYPAAYF+KVGL+GFSKAP+GTGPY++ +VTPG GV Sbjct: 148 DYQVRIRLKAPFPAALEYLSGPTPIYPAAYFRKVGLQGFSKAPVGTGPYRIAAVTPGVGV 207 Query: 206 TLVKNGNYFKDSPQGQPSIGNIKFVVIPDPETRAAQLMTGAIDWIWRVPPDQADSLKTNP 265 T+VKN NYFKDSP GQP IG ++FVVIPDPETRAAQLMTGA+DWIWRVP DQADSLK P Sbjct: 208 TMVKNPNYFKDSPLGQPKIGTVRFVVIPDPETRAAQLMTGAVDWIWRVPADQADSLKAMP 267 Query: 266 KLTVQSGETMRVGFITLDATGTSAPNSPFKDVRVRQAVNHAINRKGYAENLMRGGSQPVY 325 LTVQSGETMRVG++++DA G SAPNSPFKD RVRQAVN+AINR A+NL+RGGSQPVY Sbjct: 268 NLTVQSGETMRVGYLSMDAAGASAPNSPFKDARVRQAVNYAINRGALAKNLVRGGSQPVY 327 Query: 326 TACFRTQFGCDSNAAIKFDYNPAKAKELLAAAGYPNGFDTDIYAYREREVAEAIIGDLRK 385 CFRTQFGCD++ +K+DYNPAKA+ELL AAGYPNGFDTD+YAYRERE AEA+IGDLRK Sbjct: 328 APCFRTQFGCDTSGVVKYDYNPAKARELLKAAGYPNGFDTDLYAYREREYAEAMIGDLRK 387 Query: 386 VGIRARLHYMKFAALQTEYRSGKTPMSFYSWGSFSMNDTSAFAGVYFKGGADDITKDPQL 445 VGI ARLHY+++AAL+T RSGKTP++F +WGSFS+ND SAF VYFKGG DD KD + Sbjct: 388 VGINARLHYLQYAALRTAQRSGKTPLTFQAWGSFSVNDASAFVSVYFKGGPDDTAKDAAV 447 Query: 446 QQFLQTADTSIDPAVRKANYTKAQELISKQAYVAPMFSYSTFYAFNAQLKFQGYPDELPR 505 +++L ADTS DPAVRK NY KA IS+QAY AP+FSYST YA+ + L F YPDELPR Sbjct: 448 EKWLAAADTSNDPAVRKTNYAKALARISEQAYWAPLFSYSTNYAYASALNFNAYPDELPR 507 Query: 506 FYEASWK 512 FYEASWK Sbjct: 508 FYEASWK 514 >ref|ZP_02360302.1| extracellular solute-binding protein, family 5 [Burkholderia oklahomensis EO147] Length = 514 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 366/483 (75%), Positives = 420/483 (86%) Query: 30 GKANDTLIYASDSEVENISQYHNNLREGVILAHLIWDTLIYRDPKTNEYKPQLATAWKWE 89 G+ANDTL+YASDSE ENIS YHNNLREGVI+AH+ WDTLIYRDPKT YKP LATAWKWE Sbjct: 32 GRANDTLVYASDSEPENISPYHNNLREGVIIAHMAWDTLIYRDPKTGAYKPALATAWKWE 91 Query: 90 SPTALVLDLRQGVQFQNGDKFSADDVVFTFNYAVSAESKAVTRQNTDWIKSVDKLGDYQV 149 SPT+L++DLR+ V F NGDKF+ADDVVFTFNY V+ +SK VTRQNTDWI+S +K GDYQV Sbjct: 92 SPTSLIVDLRRDVTFHNGDKFTADDVVFTFNYVVAPDSKVVTRQNTDWIQSAEKTGDYQV 151 Query: 150 RINLKGPFPAALEYLAGPLPIYPAAYFKKVGLEGFSKAPIGTGPYKVTSVTPGQGVTLVK 209 RI L+ PFPAALEYL+GP PIYPAAYFKKVGL+GF KAP+GTGPYK+T+VTPG GVT+VK Sbjct: 152 RIRLRAPFPAALEYLSGPTPIYPAAYFKKVGLQGFGKAPVGTGPYKITAVTPGVGVTMVK 211 Query: 210 NGNYFKDSPQGQPSIGNIKFVVIPDPETRAAQLMTGAIDWIWRVPPDQADSLKTNPKLTV 269 N NYFKDSP GQP IG ++FVVIPDPETRAAQLMTGA+DWIWRVP DQADSLK P LTV Sbjct: 212 NPNYFKDSPLGQPKIGTVRFVVIPDPETRAAQLMTGAVDWIWRVPADQADSLKAMPNLTV 271 Query: 270 QSGETMRVGFITLDATGTSAPNSPFKDVRVRQAVNHAINRKGYAENLMRGGSQPVYTACF 329 QSGETMRVG++++DA G SAPNSPFKD RVRQAVN+AINR A+NL+RGGSQPVY CF Sbjct: 272 QSGETMRVGYLSMDAAGASAPNSPFKDARVRQAVNYAINRGALAKNLVRGGSQPVYAPCF 331 Query: 330 RTQFGCDSNAAIKFDYNPAKAKELLAAAGYPNGFDTDIYAYREREVAEAIIGDLRKVGIR 389 RTQFGCD++ +K+DYNPAKA+ELL AAGYPNGFDTD+YAYRERE AEA+IGDLRKVGI Sbjct: 332 RTQFGCDTSGVVKYDYNPAKARELLKAAGYPNGFDTDLYAYREREYAEAMIGDLRKVGIN 391 Query: 390 ARLHYMKFAALQTEYRSGKTPMSFYSWGSFSMNDTSAFAGVYFKGGADDITKDPQLQQFL 449 ARLHY+++AAL+T RSGKTP++F +WGSFS+ND SAF GVYFKGG DD KD ++++L Sbjct: 392 ARLHYLQYAALRTAQRSGKTPLTFQAWGSFSVNDASAFVGVYFKGGPDDSAKDATVEKWL 451 Query: 450 QTADTSIDPAVRKANYTKAQELISKQAYVAPMFSYSTFYAFNAQLKFQGYPDELPRFYEA 509 ADTS DPAVRKANY KA IS+QAY AP+FSYST YA+ + L F+ YPDELPRFYEA Sbjct: 452 DAADTSNDPAVRKANYAKALTRISEQAYWAPLFSYSTNYAYTSALNFKAYPDELPRFYEA 511 Query: 510 SWK 512 SWK Sbjct: 512 SWK 514