BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3818.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776572.1| dipeptide/oligopeptide/nickel ABC transporte... 526 e-147 ref|YP_999446.1| binding-protein-dependent transport systems inn... 464 e-129 emb|CCA83464.1| dipeptide transporter, membrane component of ABC... 446 e-123 ref|YP_003749702.1| dipeptide transporter, membrane component of... 446 e-123 ref|ZP_02360303.1| binding-protein-dependent transport systems i... 438 e-121 >ref|YP_003776572.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64664.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 294/305 (96%), Positives = 302/305 (99%) Query: 1 MLIYLLRRLAIALCVALTVSVVSFTLLHMSGDLAVSIAGPEATAAQVESVRTQFGLDRPL 60 MLIY+LRRLAIALCVA+TVSVVSFTLLHMSGDLAVSIAGPEATAAQVESVRTQFGLDRP+ Sbjct: 1 MLIYILRRLAIALCVAVTVSVVSFTLLHMSGDLAVSIAGPEATAAQVESVRTQFGLDRPM 60 Query: 61 TTQYVDWLGRAVQLDFGKSFYFQGPVMEMISERLPITIKLGGSALLLAILTAIPLGVLAA 120 TQY+DWLGRAVQLDFGKSFYFQGPVMEMI+ERLPIT KLGGSALLLA+LTAIPLGVLAA Sbjct: 61 ATQYLDWLGRAVQLDFGKSFYFQGPVMEMIAERLPITFKLGGSALLLAVLTAIPLGVLAA 120 Query: 121 LYRDTWLDRTALLIAVVGQAMPSFWFGLTLILLFAVTLHWLPVAGNESWQHFILPAVALG 180 +YRDTWLDR ALLIAVVGQAMPSFWFGLTLIL+FAVTLHWLPVAGNESWQHFILPAVALG Sbjct: 121 IYRDTWLDRAALLIAVVGQAMPSFWFGLTLILIFAVTLHWLPVAGNESWQHFILPAVALG 180 Query: 181 YYAMPAMMRLTRSGMLEVLGSDYIRTARAKGLSKSRVVFKHALRNAVIPVVALAAVELGF 240 YYAMPAMMRLTRSGMLEVLGSDYIRTARAKGLSKSRVVFKHALRNAVIPVVALAAVELGF Sbjct: 181 YYAMPAMMRLTRSGMLEVLGSDYIRTARAKGLSKSRVVFKHALRNAVIPVVALAAVELGF 240 Query: 241 MLGGSVVIESVYSMQGLGQLAWDAISRNDYPVVQAVVLIIAMFYIGLTFLADVINALLDP 300 MLGGSVVIESVYSMQGLGQLAWDAISRNDYPVVQAVVLIIAMFYIGLTFLADVINALLDP Sbjct: 241 MLGGSVVIESVYSMQGLGQLAWDAISRNDYPVVQAVVLIIAMFYIGLTFLADVINALLDP 300 Query: 301 RIRTR 305 RIRTR Sbjct: 301 RIRTR 305 >ref|YP_999446.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] gb|ABM60428.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] Length = 305 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 255/305 (83%), Positives = 286/305 (93%) Query: 1 MLIYLLRRLAIALCVALTVSVVSFTLLHMSGDLAVSIAGPEATAAQVESVRTQFGLDRPL 60 MLI++L RLAIALCVA+TVS+VSF LLH+SGDLA +IAG EA+AAQVE++R Q GLDRP+ Sbjct: 1 MLIHILHRLAIALCVAVTVSIVSFLLLHLSGDLATAIAGSEASAAQVEAIRVQLGLDRPM 60 Query: 61 TTQYVDWLGRAVQLDFGKSFYFQGPVMEMISERLPITIKLGGSALLLAILTAIPLGVLAA 120 +QY+DWLGRAVQLDFG+SFYFQ VM++I+ERLPIT+KLG ALLLA + AIPLGVLAA Sbjct: 61 LSQYLDWLGRAVQLDFGRSFYFQADVMQLIAERLPITMKLGSIALLLATVVAIPLGVLAA 120 Query: 121 LYRDTWLDRTALLIAVVGQAMPSFWFGLTLILLFAVTLHWLPVAGNESWQHFILPAVALG 180 +YRDTWLDR AL +AVVGQAMPSFWFGL LIL+F+VTLHWLPVAGNE W++F+LPA+AL Sbjct: 121 IYRDTWLDRIALALAVVGQAMPSFWFGLGLILIFSVTLHWLPVAGNERWENFVLPAIALA 180 Query: 181 YYAMPAMMRLTRSGMLEVLGSDYIRTARAKGLSKSRVVFKHALRNAVIPVVALAAVELGF 240 YYAMPAMMRLTR+GMLEVLGSDYIRTARAKGL+K++V+FKHALRNAVIPVVALAAVELGF Sbjct: 181 YYAMPAMMRLTRAGMLEVLGSDYIRTARAKGLAKNKVIFKHALRNAVIPVVALAAVELGF 240 Query: 241 MLGGSVVIESVYSMQGLGQLAWDAISRNDYPVVQAVVLIIAMFYIGLTFLADVINALLDP 300 MLGGSVVIESVYSMQGLGQLAWDAISRNDYPVVQAVVLIIAMFYIGLTFLADVINALLDP Sbjct: 241 MLGGSVVIESVYSMQGLGQLAWDAISRNDYPVVQAVVLIIAMFYIGLTFLADVINALLDP 300 Query: 301 RIRTR 305 RIR R Sbjct: 301 RIRIR 305 >emb|CCA83464.1| dipeptide transporter, membrane component of ABC superfamily [blood disease bacterium R229] Length = 305 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 242/305 (79%), Positives = 275/305 (90%) Query: 1 MLIYLLRRLAIALCVALTVSVVSFTLLHMSGDLAVSIAGPEATAAQVESVRTQFGLDRPL 60 ML YLLRRLA+ALCVALTVSVVSF LLH+SGDLA SIAG +ATA QVE++R Q+GLDRP+ Sbjct: 1 MLTYLLRRLAVALCVALTVSVVSFALLHLSGDLAASIAGADATAEQVETIRHQYGLDRPV 60 Query: 61 TTQYVDWLGRAVQLDFGKSFYFQGPVMEMISERLPITIKLGGSALLLAILTAIPLGVLAA 120 T QY WLGR + LD G+SF+FQ PV +++ERLPIT++LGG ALL+A+ TAIPLGVLAA Sbjct: 61 TEQYFAWLGRTLHLDLGQSFFFQAPVTGLVAERLPITLRLGGIALLIAVCTAIPLGVLAA 120 Query: 121 LYRDTWLDRTALLIAVVGQAMPSFWFGLTLILLFAVTLHWLPVAGNESWQHFILPAVALG 180 LYRD W+DR ALL+AV+GQAMPSFWFGLTLILLFAV L WLPV+GN SWQHF+LPA+ALG Sbjct: 121 LYRDRWVDRLALLLAVIGQAMPSFWFGLTLILLFAVKLQWLPVSGNTSWQHFVLPAIALG 180 Query: 181 YYAMPAMMRLTRSGMLEVLGSDYIRTARAKGLSKSRVVFKHALRNAVIPVVALAAVELGF 240 YYA PAMMRLTR+GML+VLG+DYIRTARAKGL V+FKHALRNAVIPVVALAAVELGF Sbjct: 181 YYATPAMMRLTRAGMLDVLGADYIRTARAKGLGPGTVIFKHALRNAVIPVVALAAVELGF 240 Query: 241 MLGGSVVIESVYSMQGLGQLAWDAISRNDYPVVQAVVLIIAMFYIGLTFLADVINALLDP 300 MLGGSVVIESVY+MQGLGQLAW+AI+RNDYPVVQAVVL+I++FYIGLT LADVINA LDP Sbjct: 241 MLGGSVVIESVYAMQGLGQLAWEAIARNDYPVVQAVVLLISLFYIGLTLLADVINAALDP 300 Query: 301 RIRTR 305 RI TR Sbjct: 301 RIHTR 305 >ref|YP_003749702.1| dipeptide transporter, membrane component of ABC superfamily [Ralstonia solanacearum PSI07] emb|CBJ35071.1| dipeptide transporter, membrane component of ABC superfamily [Ralstonia solanacearum PSI07] Length = 305 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 242/305 (79%), Positives = 275/305 (90%) Query: 1 MLIYLLRRLAIALCVALTVSVVSFTLLHMSGDLAVSIAGPEATAAQVESVRTQFGLDRPL 60 ML YLLRRLA+ALCVALTVSVVSF LLH+SGDLA SIAG +ATA QVE++R Q+GLDRP+ Sbjct: 1 MLTYLLRRLAVALCVALTVSVVSFALLHLSGDLAASIAGADATAEQVETIRHQYGLDRPV 60 Query: 61 TTQYVDWLGRAVQLDFGKSFYFQGPVMEMISERLPITIKLGGSALLLAILTAIPLGVLAA 120 T QY WLGR + LD G+SF+FQ PV +++ERLPIT++LGG ALL+A+ TAIPLGVLAA Sbjct: 61 TEQYFAWLGRTLHLDLGQSFFFQAPVAGLVAERLPITLRLGGIALLIAVCTAIPLGVLAA 120 Query: 121 LYRDTWLDRTALLIAVVGQAMPSFWFGLTLILLFAVTLHWLPVAGNESWQHFILPAVALG 180 LYRD W+DR ALL+AV+GQAMPSFWFGLTLILLFAV L WLPV+GN SWQHF+LPA+ALG Sbjct: 121 LYRDRWVDRLALLLAVIGQAMPSFWFGLTLILLFAVKLQWLPVSGNTSWQHFVLPAIALG 180 Query: 181 YYAMPAMMRLTRSGMLEVLGSDYIRTARAKGLSKSRVVFKHALRNAVIPVVALAAVELGF 240 YYA PAMMRLTR+GML+VLG+DYIRTARAKGL V+FKHALRNAVIPVVALAAVELGF Sbjct: 181 YYATPAMMRLTRAGMLDVLGADYIRTARAKGLGPGTVIFKHALRNAVIPVVALAAVELGF 240 Query: 241 MLGGSVVIESVYSMQGLGQLAWDAISRNDYPVVQAVVLIIAMFYIGLTFLADVINALLDP 300 MLGGSVVIESVY+MQGLGQLAW+AI+RNDYPVVQAVVL+I++FYIGLT LADVINA LDP Sbjct: 241 MLGGSVVIESVYAMQGLGQLAWEAIARNDYPVVQAVVLLISLFYIGLTLLADVINAALDP 300 Query: 301 RIRTR 305 RI TR Sbjct: 301 RIHTR 305 >ref|ZP_02360303.1| binding-protein-dependent transport systems inner membrane component [Burkholderia oklahomensis EO147] Length = 305 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 240/305 (78%), Positives = 276/305 (90%) Query: 1 MLIYLLRRLAIALCVALTVSVVSFTLLHMSGDLAVSIAGPEATAAQVESVRTQFGLDRPL 60 M YLLRRL +A+ VALTVS+VSF LLH+SGDLA +IAGPEATAAQVE++R Q+GLDRP+ Sbjct: 1 MSAYLLRRLGLAIAVALTVSIVSFALLHLSGDLATAIAGPEATAAQVEALRIQYGLDRPV 60 Query: 61 TTQYVDWLGRAVQLDFGKSFYFQGPVMEMISERLPITIKLGGSALLLAILTAIPLGVLAA 120 T QYVDWL RA LDFG+S++FQ V ++I+ERLPIT+KLGG AL LA+ AIPLGV+AA Sbjct: 61 TAQYVDWLWRAAHLDFGRSYFFQSSVADLIAERLPITLKLGGVALGLAVAVAIPLGVVAA 120 Query: 121 LYRDTWLDRTALLIAVVGQAMPSFWFGLTLILLFAVTLHWLPVAGNESWQHFILPAVALG 180 LYRDTW+DR ALL+AV+GQAMPSFWFGLTLIL+FAV L WLPVAGN+ W++F+LPAVALG Sbjct: 121 LYRDTWIDRAALLVAVIGQAMPSFWFGLTLILVFAVGLKWLPVAGNDDWRNFVLPAVALG 180 Query: 181 YYAMPAMMRLTRSGMLEVLGSDYIRTARAKGLSKSRVVFKHALRNAVIPVVALAAVELGF 240 YYA PAMMRLTR+GML+VLG+DYIRTARAKGLS +RVV KHALRNA+IPVVALAAVELGF Sbjct: 181 YYATPAMMRLTRAGMLDVLGADYIRTARAKGLSPARVVCKHALRNALIPVVALAAVELGF 240 Query: 241 MLGGSVVIESVYSMQGLGQLAWDAISRNDYPVVQAVVLIIAMFYIGLTFLADVINALLDP 300 MLGGSVVIESV+S+QGLGQLAWDAI+RND+PVVQAVVLIIAMFY+ LTF ADV NA LDP Sbjct: 241 MLGGSVVIESVFSLQGLGQLAWDAIARNDFPVVQAVVLIIAMFYVALTFFADVANAALDP 300 Query: 301 RIRTR 305 RIRTR Sbjct: 301 RIRTR 305