BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3817.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776571.1| dipeptide/oligopeptide/nickel ABC transporte... 473 e-131 ref|YP_999445.1| binding-protein-dependent transport systems inn... 427 e-117 ref|YP_001342656.1| binding-protein-dependent transporter inner ... 426 e-117 ref|YP_004311918.1| ABC-type transporter integral membrane subun... 414 e-113 ref|YP_004483186.1| ABC transporter integral membrane protein [M... 410 e-112 >ref|YP_003776571.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64663.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 281/293 (95%), Positives = 286/293 (97%) Query: 65 VLSAALPPLPAWRRKLRRLLGHRGLVLGALFLAVIVLAAIFAPLLAPHDPFDQDVTARLI 124 +L ALPPLPAWRRKLRRLLGHRGL++GA LAVIVLAAIFAPLLAPHDPFDQDVTARLI Sbjct: 13 LLQGALPPLPAWRRKLRRLLGHRGLMIGAAVLAVIVLAAIFAPLLAPHDPFDQDVTARLI 72 Query: 125 PPVWQAQGSWEHILGTDKLGRDYLSRLIFGARVSLTIGIAAALISGLIGTTLGVLAGYFG 184 PPVWQAQGSWEHILGTDKLGRDY SRLI+GARVSLTIG+AAALISGLIGTTLGVLAGYFG Sbjct: 73 PPVWQAQGSWEHILGTDKLGRDYFSRLIYGARVSLTIGLAAALISGLIGTTLGVLAGYFG 132 Query: 185 GRTDAVISYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQL 244 GRTDAVISYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQL Sbjct: 133 GRTDAVISYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQL 192 Query: 245 RDAEFIAAAKAIGASTPYILLREILPNIMGALIVVATLEMAHAILLEATLSFLGLGVQPP 304 RDAEFIAAAKAIGASTPYILLREILPNIMGALIVV TLEMAHAILLEATLSFLGLGVQPP Sbjct: 193 RDAEFIAAAKAIGASTPYILLREILPNIMGALIVVVTLEMAHAILLEATLSFLGLGVQPP 252 Query: 305 TPSWGLMVAEGKTYMFFKPWVIVIPGVALALLVLAINLVGDGLRDVNATDGRN 357 TPSWGLMVAEGKTYMFFKPWVIVIPGVALALLVLAINLVGDGLRDVNA DGRN Sbjct: 253 TPSWGLMVAEGKTYMFFKPWVIVIPGVALALLVLAINLVGDGLRDVNAPDGRN 305 >ref|YP_999445.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] gb|ABM60427.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] Length = 299 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 253/301 (84%), Positives = 277/301 (92%), Gaps = 3/301 (0%) Query: 57 SSTLPAPAVLSAALPPLPAWRRKLRRLLGHRGLVLGALFLAVIVLAAIFAPLLAPHDPFD 116 S+ L P +L P P WRRKLRRLLGHRGL+LG LA+IVLAAIFAPLLA HDPFD Sbjct: 2 SANLSIPQLLPM---PAPLWRRKLRRLLGHRGLMLGGAILALIVLAAIFAPLLATHDPFD 58 Query: 117 QDVTARLIPPVWQAQGSWEHILGTDKLGRDYLSRLIFGARVSLTIGIAAALISGLIGTTL 176 Q+V RLIPP+W AQGSWEH+LGTDKLGRDYLSRLI+GARVSL IG AAALISGLIGTTL Sbjct: 59 QNVAQRLIPPIWHAQGSWEHVLGTDKLGRDYLSRLIYGARVSLIIGAAAALISGLIGTTL 118 Query: 177 GVLAGYFGGRTDAVISYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVV 236 GVLAGYFGGR DA+ISYLITTRL+MPVVLVA+AMASLVGGS++VVI LLGLLLWDRFAVV Sbjct: 119 GVLAGYFGGRVDALISYLITTRLSMPVVLVAMAMASLVGGSIEVVITLLGLLLWDRFAVV 178 Query: 237 TRSATQQLRDAEFIAAAKAIGASTPYILLREILPNIMGALIVVATLEMAHAILLEATLSF 296 TR+ATQQLRDAEFIAAAKAIGASTPYIL+RE+LPNIMGAL+VV TLEMAHAILLEATLSF Sbjct: 179 TRAATQQLRDAEFIAAAKAIGASTPYILVREVLPNIMGALMVVITLEMAHAILLEATLSF 238 Query: 297 LGLGVQPPTPSWGLMVAEGKTYMFFKPWVIVIPGVALALLVLAINLVGDGLRDVNATDGR 356 LGLGVQPPTPSWGLMVAEGK+YMFFKPW+IVIPG+ALA+LVLAINLVGDGLRD++A DGR Sbjct: 239 LGLGVQPPTPSWGLMVAEGKSYMFFKPWIIVIPGLALAMLVLAINLVGDGLRDIDAPDGR 298 Query: 357 N 357 + Sbjct: 299 H 299 >ref|YP_001342656.1| binding-protein-dependent transporter inner membrane component [Marinomonas sp. MWYL1] gb|ABR72721.1| binding-protein-dependent transport systems inner membrane component [Marinomonas sp. MWYL1] Length = 305 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 228/306 (74%), Positives = 269/306 (87%), Gaps = 1/306 (0%) Query: 52 MSVTSSSTLPAPAVLSAALPPLPAWRRKLRRLLGHRGLVLGALFLAVIVLAAIFAPLLAP 111 MS ++S+ AP + LP +P WRR + R LGHRGL++G++ L +IV+ AI AP LAP Sbjct: 1 MSDSTSTVSTAPGA-NTFLPVVPEWRRMMNRFLGHRGLLMGSIILGLIVVLAILAPWLAP 59 Query: 112 HDPFDQDVTARLIPPVWQAQGSWEHILGTDKLGRDYLSRLIFGARVSLTIGIAAALISGL 171 HDP+ Q+++ R+IPPVW +GSWEHI GTDKLGRDYLSRL++GAR+SLTIG+++ALISGL Sbjct: 60 HDPYLQNISQRMIPPVWHEKGSWEHIFGTDKLGRDYLSRLLYGARISLTIGLSSALISGL 119 Query: 172 IGTTLGVLAGYFGGRTDAVISYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWD 231 IGTTLGVLAGYFGGR DAVISY+ITTRLAMPVVLVALAM++LVGGSL++VI+LLGLLLWD Sbjct: 120 IGTTLGVLAGYFGGRVDAVISYIITTRLAMPVVLVALAMSALVGGSLQMVIILLGLLLWD 179 Query: 232 RFAVVTRSATQQLRDAEFIAAAKAIGASTPYILLREILPNIMGALIVVATLEMAHAILLE 291 RFAVV RS TQQLRDAEFIA+AK +GAST YIL+RE+LPNI+ ALIVV TLEMAHAILLE Sbjct: 180 RFAVVARSTTQQLRDAEFIASAKVLGASTTYILVRELLPNILSALIVVMTLEMAHAILLE 239 Query: 292 ATLSFLGLGVQPPTPSWGLMVAEGKTYMFFKPWVIVIPGVALALLVLAINLVGDGLRDVN 351 ATLSFLGLGVQPP PSWGLM++EGK YMFFK WVI IPG+AL +LVLAINLVGDGLRD+N Sbjct: 240 ATLSFLGLGVQPPMPSWGLMISEGKAYMFFKTWVIAIPGIALMVLVLAINLVGDGLRDMN 299 Query: 352 ATDGRN 357 A +GRN Sbjct: 300 APEGRN 305 >ref|YP_004311918.1| ABC-type transporter integral membrane subunit [Marinomonas mediterranea MMB-1] gb|ADZ90082.1| ABC-type transporter, integral membrane subunit [Marinomonas mediterranea MMB-1] Length = 312 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 228/291 (78%), Positives = 265/291 (91%) Query: 67 SAALPPLPAWRRKLRRLLGHRGLVLGALFLAVIVLAAIFAPLLAPHDPFDQDVTARLIPP 126 S+ LP +P WRR L R LGHRGL++G++ L IVLAA+FAP LAPHDP+ Q+++ R+IPP Sbjct: 22 SSGLPVVPEWRRTLNRFLGHRGLLIGSVILGAIVLAALFAPWLAPHDPYAQNISQRMIPP 81 Query: 127 VWQAQGSWEHILGTDKLGRDYLSRLIFGARVSLTIGIAAALISGLIGTTLGVLAGYFGGR 186 +W +GSWEHILGTDKLGRDYLSRL++GAR+SLTIG+ AALISG+IGTTLGVLAGYFGGR Sbjct: 82 IWHEKGSWEHILGTDKLGRDYLSRLLYGARISLTIGLTAALISGVIGTTLGVLAGYFGGR 141 Query: 187 TDAVISYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQLRD 246 TDAVISY+ITTRLA+PV+LVALAMA+LVGGSL++VI+LLGLLLWDRFAVV RS TQQLRD Sbjct: 142 TDAVISYIITTRLALPVLLVALAMAALVGGSLEMVIILLGLLLWDRFAVVARSTTQQLRD 201 Query: 247 AEFIAAAKAIGASTPYILLREILPNIMGALIVVATLEMAHAILLEATLSFLGLGVQPPTP 306 AEFIA+AK +GASTPYIL+RE+LPNI+ ALIVV TLEMAHAILLEATLSFLGLGVQPP P Sbjct: 202 AEFIASAKVLGASTPYILIRELLPNILSALIVVITLEMAHAILLEATLSFLGLGVQPPLP 261 Query: 307 SWGLMVAEGKTYMFFKPWVIVIPGVALALLVLAINLVGDGLRDVNATDGRN 357 SWGLMV+EGK YMFF+PWVI IPG+ L +LVLAINLVGDGLRD+NA +GRN Sbjct: 262 SWGLMVSEGKAYMFFQPWVIAIPGITLMVLVLAINLVGDGLRDMNAPEGRN 312 >ref|YP_004483186.1| ABC transporter integral membrane protein [Marinomonas posidonica IVIA-Po-181] gb|AEF56267.1| ABC-type transporter, integral membrane subunit [Marinomonas posidonica IVIA-Po-181] Length = 312 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 226/291 (77%), Positives = 264/291 (90%) Query: 67 SAALPPLPAWRRKLRRLLGHRGLVLGALFLAVIVLAAIFAPLLAPHDPFDQDVTARLIPP 126 ++ LP +P WRR L + LGHRGL +G++ L VIVLAAIFAP LAPHDP+ Q+++ R+IPP Sbjct: 22 ASGLPVVPEWRRALNKFLGHRGLFIGSVILGVIVLAAIFAPWLAPHDPYVQNISQRMIPP 81 Query: 127 VWQAQGSWEHILGTDKLGRDYLSRLIFGARVSLTIGIAAALISGLIGTTLGVLAGYFGGR 186 +W +G+WEHILGTDKLGRDYLSRL++GAR+SLTIG+ AALISG+IGTTLGVLAGYFGGR Sbjct: 82 IWHEKGTWEHILGTDKLGRDYLSRLLYGARISLTIGLTAALISGVIGTTLGVLAGYFGGR 141 Query: 187 TDAVISYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQLRD 246 TDAVISY+ITTRLA+PV+LVALAMA+LVGGSL++VI+LLGLLLWDRFAVV RS TQQLRD Sbjct: 142 TDAVISYIITTRLALPVLLVALAMAALVGGSLEMVIILLGLLLWDRFAVVARSTTQQLRD 201 Query: 247 AEFIAAAKAIGASTPYILLREILPNIMGALIVVATLEMAHAILLEATLSFLGLGVQPPTP 306 AEFIA+AK +GAST YIL+RE+LPNI+ ALIVV TLEMAHAILLEATLSFLGLGVQPP P Sbjct: 202 AEFIASAKVLGASTSYILIRELLPNILSALIVVITLEMAHAILLEATLSFLGLGVQPPLP 261 Query: 307 SWGLMVAEGKTYMFFKPWVIVIPGVALALLVLAINLVGDGLRDVNATDGRN 357 SWGLMV+EGK YMFF+PWVI IPG+ L +LVLAINLVGDGLRD+NA +GRN Sbjct: 262 SWGLMVSEGKAYMFFQPWVIAIPGITLMILVLAINLVGDGLRDMNAPEGRN 312