BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3812.p (222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776565.1| hypothetical protein Hsero_3175 [Herbaspiril... 384 e-105 ref|ZP_01216263.1| hypothetical protein PCNPT3_08120 [Psychromon... 140 1e-31 gb|EGP56305.1| hypothetical protein Agau_C200035 [Agrobacterium ... 135 4e-30 ref|ZP_08530007.1| hypothetical protein AGRO_4015 [Agrobacterium... 135 4e-30 pdb|2HLY|A Chain A, The Crystal Structure Of Genomics Apc5867 134 9e-30 >ref|YP_003776565.1| hypothetical protein Hsero_3175 [Herbaspirillum seropedicae SmR1] gb|ADJ64657.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 196/222 (88%), Positives = 206/222 (92%) Query: 1 MQSSHSSAQNLRPLIPLADYQRIFRVIHSVLHSVEADIPAASFFFSVTAAQILKKFYKRN 60 MQ+SHSSAQNLRPLIPLADYQRIFRVIHSVLHSVEADIPAASFFFSVTAAQILKKFYKRN Sbjct: 1 MQTSHSSAQNLRPLIPLADYQRIFRVIHSVLHSVEADIPAASFFFSVTAAQILKKFYKRN 60 Query: 61 AFPVAGAAFYLIREDGGGALSFGSLAEDGQSVTSHQDAFHAWVQCDGYALDFMAPLFQEL 120 AFPVAGAAFYLI D GALSFG+LAEDGQSV S +DAFHAWVQCDGYA+DFMAPLFQEL Sbjct: 61 AFPVAGAAFYLIHPDRAGALSFGTLAEDGQSVASDKDAFHAWVQCDGYAIDFMAPLFQEL 120 Query: 121 LVSAGHPLPVPRQMFQKDLQRMSADVQALAKPGDFYLASNLELTRELLQQFMAKKALTNL 180 L SAGHPLPVPR+MFQKDL RM + VQAL+ PGDFYLA +L LTRELLQQFMAKKALTNL Sbjct: 121 LSSAGHPLPVPRRMFQKDLGRMCSGVQALSVPGDFYLAPDLALTRELLQQFMAKKALTNL 180 Query: 181 SQLCLEWFRKPPKAMPDDLALQGADGEVSRIKLQATAIEGVW 222 SQLC EWFRKPPKAMPDDLALQGADGE+SRI LQ TAI+GVW Sbjct: 181 SQLCQEWFRKPPKAMPDDLALQGADGEISRISLQPTAIDGVW 222 >ref|ZP_01216263.1| hypothetical protein PCNPT3_08120 [Psychromonas sp. CNPT3] gb|EAS38894.1| hypothetical protein PCNPT3_08120 [Psychromonas sp. CNPT3] Length = 207 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 73/211 (34%), Positives = 120/211 (56%), Gaps = 7/211 (3%) Query: 14 LIPLADYQRIFRVIHSVLHSVEADIPAASFFFSVTAAQILKKFYKRNAFPVAG-AAFYLI 72 LI L+DYQRI+ + H+VL S +D + F++ A IL + YK NA +G AA++L Sbjct: 2 LITLSDYQRIYSIAHAVLKSENSDTNKSCLFYNYCGAYILNEHYKINAKVYSGFAAYHLG 61 Query: 73 REDGGGALSFGSLAEDGQSVTSHQDAFHAWVQCDGYALDFMAPLFQELLVSAGHPLPVPR 132 E+ L FGS+ DGQ + S +D FH+W++ DG+ +DFMAP F +++S G+ P+PR Sbjct: 62 VEN---ILGFGSIV-DGQ-LKSSEDEFHSWIEADGWLIDFMAPEFPNVMLSKGYDAPIPR 116 Query: 133 QMFQKDLQRMSADVQALAKPGDFYLASNLELTRELLQQFMAKKALTNLSQLCLEWFRKPP 192 +M Q L M+ + GDF + ++++T+ L + + +L +C WF K P Sbjct: 117 KMMQSKLDSMAEGPDYIKNSGDFLVIPDMDVTKSLAKHLESSSTFIDLVVICNRWFHKKP 176 Query: 193 KAMPDDLALQGADGEVSRIKLQATA-IEGVW 222 M +++ G++++I L + I G W Sbjct: 177 NKMHKSISITNGHGQLNQITLSGSKPIIGRW 207 >gb|EGP56305.1| hypothetical protein Agau_C200035 [Agrobacterium tumefaciens F2] Length = 202 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 80/209 (38%), Positives = 111/209 (53%), Gaps = 8/209 (3%) Query: 14 LIPLADYQRIFRVIHSVLHSVEADIPAASFFFSVTAAQILKKFYKRNAFPVAGAAFYLIR 73 LI DY RI+RVI+S+L S AD +AS +FS A IL++ YK A P G A Y + Sbjct: 2 LIKQTDYHRIYRVINSLLVSQNADPASASMYFSTFGAFILQQHYKVKAVPKGGLAAYNL- 60 Query: 74 EDGGGALSFGSLAEDGQSVTSHQDAFHAWVQCDGYALDFMAPLFQELLVSAGHPLPVPRQ 133 GG L F EDG VT + FH WV+ DG+A+DFMAP F + L VP + Sbjct: 61 --GGTVLLFADHREDGY-VTGAGENFHCWVEADGWAIDFMAPAFSQ----GSDALSVPAK 113 Query: 134 MFQKDLQRMSADVQALAKPGDFYLASNLELTRELLQQFMAKKALTNLSQLCLEWFRKPPK 193 MFQ+ L MSA + L + GDF+ S E T + + + + +++ + WFRK PK Sbjct: 114 MFQRPLSAMSASINDLGQSGDFFYRSEAEATAKRFADWHRQAMIGDMASVAANWFRKSPK 173 Query: 194 AMPDDLALQGADGEVSRIKLQATAIEGVW 222 M L++ DG+ + L + G W Sbjct: 174 QMAASLSVTDRDGKARTVPLSGQMLTGAW 202 >ref|ZP_08530007.1| hypothetical protein AGRO_4015 [Agrobacterium sp. ATCC 31749] gb|EGL63305.1| hypothetical protein AGRO_4015 [Agrobacterium sp. ATCC 31749] Length = 202 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 81/209 (38%), Positives = 110/209 (52%), Gaps = 8/209 (3%) Query: 14 LIPLADYQRIFRVIHSVLHSVEADIPAASFFFSVTAAQILKKFYKRNAFPVAGAAFYLIR 73 LI DY RI+RVI+S+L S AD +AS +FS A IL++ YK A P G A Y + Sbjct: 2 LIKQTDYFRIYRVINSLLISQNADPASASMYFSTFGAFILQQHYKVKAVPKGGLAAYNL- 60 Query: 74 EDGGGALSFGSLAEDGQSVTSHQDAFHAWVQCDGYALDFMAPLFQELLVSAGHPLPVPRQ 133 GG L F EDG VT D FH WV+ DG+A+DFMAP F E L VP + Sbjct: 61 --GGTVLLFADHREDGY-VTGAGDNFHCWVEADGWAIDFMAPAFSE----GTDALAVPAK 113 Query: 134 MFQKDLQRMSADVQALAKPGDFYLASNLELTRELLQQFMAKKALTNLSQLCLEWFRKPPK 193 MFQ+ L M+A + L + GDF+ S E T + + + +++ + WFRK PK Sbjct: 114 MFQRPLSAMAASINDLGQSGDFFYRSEPEATARRFADWHKQAMIGDMASVAANWFRKSPK 173 Query: 194 AMPDDLALQGADGEVSRIKLQATAIEGVW 222 M L++ DG+ + L + G W Sbjct: 174 QMAASLSVTDRDGKARTVPLTGEMLTGAW 202 >pdb|2HLY|A Chain A, The Crystal Structure Of Genomics Apc5867 Length = 207 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 80/209 (38%), Positives = 110/209 (52%), Gaps = 8/209 (3%) Query: 14 LIPLADYQRIFRVIHSVLHSVEADIPAASFFFSVTAAQILKKFYKRNAFPVAGAAFYLIR 73 LI DY RI+RVI+S+L S AD +AS +FS A IL++ YK A P G A Y + Sbjct: 7 LIKQTDYFRIYRVINSLLISQNADPASASMYFSTFGAFILQQHYKVKAVPKGGLAAYNL- 65 Query: 74 EDGGGALSFGSLAEDGQSVTSHQDAFHAWVQCDGYALDFMAPLFQELLVSAGHPLPVPRQ 133 GG L F EDG VT + FH WV+ DG+A+DFMAP F E L VP + Sbjct: 66 --GGTVLLFADHREDGY-VTGAGENFHCWVEADGWAIDFMAPAFSE----GTDALAVPAK 118 Query: 134 MFQKDLQRMSADVQALAKPGDFYLASNLELTRELLQQFMAKKALTNLSQLCLEWFRKPPK 193 MFQ+ L M+A + L + GDF+ S E T + + + +++ + WFRK PK Sbjct: 119 MFQRPLSAMAASINDLGQSGDFFYRSEPEATARRFADWHKQAMIGDMASVAANWFRKSPK 178 Query: 194 AMPDDLALQGADGEVSRIKLQATAIEGVW 222 M L++ DG+ + L + G W Sbjct: 179 QMAASLSVTDRDGKARTVPLTGEMLTGAW 207