BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3809.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776560.1| hypothetical protein Hsero_3170 [Herbaspiril... 335 5e-90 ref|YP_001792575.1| hypothetical protein Lcho_3556 [Leptothrix c... 163 2e-38 ref|YP_998132.1| hypothetical protein Veis_3393 [Verminephrobact... 162 3e-38 ref|YP_002943759.1| hypothetical protein Vapar_1843 [Variovorax ... 159 4e-37 ref|YP_002890463.1| hypothetical protein Tmz1t_3492 [Thauera sp.... 159 4e-37 >ref|YP_003776560.1| hypothetical protein Hsero_3170 [Herbaspirillum seropedicae SmR1] gb|ADJ64652.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 256 Score = 335 bits (858), Expect = 5e-90, Method: Composition-based stats. Identities = 192/255 (75%), Positives = 208/255 (81%), Gaps = 23/255 (9%) Query: 1 MKSIAWIGGIVVAGLLVGYSVHLAATPNAPKAA--------------------PVAEAPA 40 MK++ W+GGIV AGLLVG V L A +A A P A A Sbjct: 1 MKTLYWMGGIVAAGLLVGSGVRLLAHSDAQAAPAAAAPAPHAAAPGAPLAGAVPAVTARA 60 Query: 41 PAAAAAP---YSDNGPYKVGDQLQQSAAVTEKPYQASGKMVSGFQEIAWESLIPKDWDPM 97 A + P + NG Y+VGDQL+QS AVT+KPYQASGKMV+G+QEIAWE+LIPKDWDPM Sbjct: 61 DAGSTVPGVAAATNGQYQVGDQLKQSPAVTDKPYQASGKMVNGYQEIAWEALIPKDWDPM 120 Query: 98 APFKGLKLDQMTDDDPRADAALWKAKKYWKDAPVDPAMEGKPVRLPGFVVSLDREGEALK 157 APFKGLKLDQ+TD+DPRADAALWKAKKYWKDAPVD +MEGKPVRLPGFVVSLDREGEALK Sbjct: 121 APFKGLKLDQLTDEDPRADAALWKAKKYWKDAPVDASMEGKPVRLPGFVVSLDREGEALK 180 Query: 158 EFLLVPYFGACIHVPPPPANQIIHVKSAKAVKNVRTMDAVWISGVLKVERSDSSMGASSY 217 EFLLVPYFGACIHVPPPPANQIIHV+SAKAVKNVRTMDAVWISGVLKVERSDSSMGASSY Sbjct: 181 EFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISGVLKVERSDSSMGASSY 240 Query: 218 SMKAVSVEPYTAPDN 232 SMKAVSVEPYTAPDN Sbjct: 241 SMKAVSVEPYTAPDN 255 >ref|YP_001792575.1| hypothetical protein Lcho_3556 [Leptothrix cholodnii SP-6] gb|ACB35810.1| conserved hypothetical protein [Leptothrix cholodnii SP-6] Length = 190 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 81/150 (54%), Positives = 103/150 (68%) Query: 81 FQEIAWESLIPKDWDPMAPFKGLKLDQMTDDDPRADAALWKAKKYWKDAPVDPAMEGKPV 140 F+EI W+ L+PKDWDP F+ KLD +TD+DPR++A L + ++ W AP +P M G V Sbjct: 40 FKEIRWDELVPKDWDPYKRFRDKKLDGLTDNDPRSEAMLKEMREVWDAAPTNPLMNGARV 99 Query: 141 RLPGFVVSLDREGEALKEFLLVPYFGACIHVPPPPANQIIHVKSAKAVKNVRTMDAVWIS 200 RL G++V L+ LKEFLLVPYFGACIH PPPPANQIIHV A+ +K + M VW++ Sbjct: 100 RLAGYIVPLEEAKGELKEFLLVPYFGACIHTPPPPANQIIHVLPAQPLKGFKGMVPVWVN 159 Query: 201 GVLKVERSDSSMGASSYSMKAVSVEPYTAP 230 G LK +R DS MG S Y + AV VE Y P Sbjct: 160 GTLKTQRDDSMMGVSGYHLDAVKVEHYEVP 189 >ref|YP_998132.1| hypothetical protein Veis_3393 [Verminephrobacter eiseniae EF01-2] gb|ABM59114.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2] Length = 184 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 75/151 (49%), Positives = 109/151 (72%), Gaps = 1/151 (0%) Query: 81 FQEIAWESLIPKDWDPMAPFKGLK-LDQMTDDDPRADAALWKAKKYWKDAPVDPAMEGKP 139 ++EI+W+ L+PKDWDPM F+ L+ LD + D DPR + ++ W AP PAM+GK Sbjct: 30 YREISWDDLVPKDWDPMKSFRDLQNLDALPDTDPRIQKLYDRMRQVWDSAPTVPAMQGKE 89 Query: 140 VRLPGFVVSLDREGEALKEFLLVPYFGACIHVPPPPANQIIHVKSAKAVKNVRTMDAVWI 199 R+ G++V L+ + ++EFLLVPYFGACIH+PPPPANQI+HV+++ V+ +R+MDAVW+ Sbjct: 90 GRIAGYLVPLEEGKQGIREFLLVPYFGACIHLPPPPANQIVHVRASTPVRGLRSMDAVWV 149 Query: 200 SGVLKVERSDSSMGASSYSMKAVSVEPYTAP 230 SG ++RSDS++G S Y+M A SV + P Sbjct: 150 SGRFGLQRSDSTLGVSGYTMTADSVTKHQGP 180 >ref|YP_002943759.1| hypothetical protein Vapar_1843 [Variovorax paradoxus S110] gb|ACS18493.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 192 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 77/147 (52%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 82 QEIAWESLIPKDWDPMAPFKGLKLDQMTDDDPRADAALWKAKKYWKDAPVDPAMEGKPVR 141 QE+ WE+L+PKDWDP ++ L L+ + D+DPRA L + + W +APV+ A++G R Sbjct: 42 QELKWEALVPKDWDPTKRYRNLSLESLRDNDPRAIQMLDEMRAVWDNAPVNVALDGTAAR 101 Query: 142 LPGFVVSLDREGEALKEFLLVPYFGACIHVPPPPANQIIHVKSAKAVKNVRTMDAVWISG 201 L GFVV LD ++EFLLVPYFGACIH PPPPANQI+HV +A VK + MD V +SG Sbjct: 102 LSGFVVPLDNTQGGIREFLLVPYFGACIHTPPPPANQIVHVVAADTVKGLHAMDTVHVSG 161 Query: 202 VLKVER-SDSSMGASSYSMKAVSVEPY 227 +LK R S MG S Y +K+ SVEP+ Sbjct: 162 LLKAARYSSVDMGVSGYEIKSASVEPF 188 >ref|YP_002890463.1| hypothetical protein Tmz1t_3492 [Thauera sp. MZ1T] gb|ACR02086.1| conserved hypothetical protein [Thauera sp. MZ1T] Length = 214 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 91/190 (47%), Positives = 117/190 (61%), Gaps = 16/190 (8%) Query: 38 APAPAAAAAPYSDNGPYKVGDQLQQSAAVTEKPYQASGKMVSGFQEIAWESLIPKDWDPM 97 A APA +A G Y VGD+L P G+ F+EI+W+ LIP DW+P Sbjct: 33 AQAPAGESA-----GQYAVGDRLA-------APAPGKGE----FREISWDDLIPADWNPE 76 Query: 98 APFKGLKLDQMTDDDPRADAALWKAKKYWKDAPVDPAMEGKPVRLPGFVVSLDREGEALK 157 GL+LD++ D+DPRA AL + ++ W AP+ M G VR+PGFVV L+ GE ++ Sbjct: 77 GFLSGLELDKLEDNDPRAAEALQRMREEWDRAPLVERMAGARVRIPGFVVPLETSGEKIR 136 Query: 158 EFLLVPYFGACIHVPPPPANQIIHVKSAKAVKNVRTMDAVWISGVLKVERSDSSMGASSY 217 EFLLVPYFGAC+HVPPPPANQ+IHV K V M VW+ GV+ V R DS MG + Y Sbjct: 137 EFLLVPYFGACVHVPPPPANQLIHVIPDKPVPGGWNMLPVWVDGVMAVGRIDSDMGTAGY 196 Query: 218 SMKAVSVEPY 227 ++AV VE Y Sbjct: 197 QLRAVKVEEY 206