BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3808.p (462 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776559.1| antimicrobial peptide ABC transporter permea... 646 0.0 ref|YP_004154039.1| hypothetical protein Varpa_1718 [Variovorax ... 488 e-135 ref|YP_002943480.1| hypothetical protein Vapar_1563 [Variovorax ... 486 e-135 ref|YP_003169256.1| hypothetical protein CAP2UW1_4085 [Candidatu... 480 e-133 ref|YP_544813.1| hypothetical protein Mfla_0704 [Methylobacillus... 454 e-125 >ref|YP_003776559.1| antimicrobial peptide ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64651.1| ABC-type antimicrobial peptide transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 422 Score = 646 bits (1667), Expect = 0.0, Method: Composition-based stats. Identities = 371/422 (87%), Positives = 393/422 (93%) Query: 41 MKLLLRLAARSAWNRRFTLGLMLLAIALSTTMLLGIERVRHEVRAGFSQSVSGTDLVVGA 100 MK+LLRLA RSAWNRRFTLGLML+AIALSTTMLLGIERVRHEVRAGFSQSVSGTDLVVGA Sbjct: 1 MKILLRLAMRSAWNRRFTLGLMLVAIALSTTMLLGIERVRHEVRAGFSQSVSGTDLVVGA 60 Query: 101 RTSPIQLMLYAIFRIGGATNNMGWDSAQTLARNPAVAWTIPISLGDSHRGFPVLATNGDY 160 RTSPIQLMLYAIFRIGGATNN+GWDSAQ LARNPAVAWTIPISLGDSHRGF VLATNGDY Sbjct: 61 RTSPIQLMLYAIFRIGGATNNIGWDSAQALARNPAVAWTIPISLGDSHRGFSVLATNGDY 120 Query: 161 FTHFRYGSGQSLKLAQGQPFAGVFDAVLGADVADKLHYHLGDVIVLAHGMGGLGLTQHAD 220 FTHFRYGS Q L+L QG P AGVFDAVLGADVA KLHYHLGD+I+L+HGMGG+GLTQHAD Sbjct: 121 FTHFRYGSNQPLRLTQGHPMAGVFDAVLGADVAAKLHYHLGDIIILSHGMGGMGLTQHAD 180 Query: 221 KPFKVVGILARTGTPVDRTVHIGLDGMQAIHLDWEGGAPLPGVHIPAEFVKKFNLTPTSI 280 KPF+VVGILARTGTPVDRTVHIGLDGMQAIHLDWEGGAPLPGVHIPAEFVKKFNLTPTSI Sbjct: 181 KPFRVVGILARTGTPVDRTVHIGLDGMQAIHLDWEGGAPLPGVHIPAEFVKKFNLTPTSI 240 Query: 281 TAVLVGLKSRARVFAVQRAIADGDGFKEPLMAVLPGVALDQLWDVVGIGENALLVVSGMV 340 TAVLVGLKSRARVFA+QR IA G G+KEPLMAVLPGVALDQLWDVVGIGENALLVVSGMV Sbjct: 241 TAVLVGLKSRARVFALQREIASGQGYKEPLMAVLPGVALDQLWDVVGIGENALLVVSGMV 300 Query: 341 VVVGLAGLVAAILASLGERRRELAVLRSVGARPGDVFLLLALEGLAVMLAGVVLGAVMMT 400 VVVGLAGLVAAILASLGERRRELA+LRSVGARP DV LLL +EGL VMLAGV G ++++ Sbjct: 301 VVVGLAGLVAAILASLGERRRELAILRSVGARPLDVLLLLCIEGLGVMLAGVASGLLLLS 360 Query: 401 LALFALGPFLSAQFGVTLHPALPAAGELQLLGWTVLAGFVASLLPGLRAYRLSLADGLTP 460 L ++ LGP L+ QFG+ L PA PAAGELQLL WTVLAG VASLLP LRAYRLSL+DGLTP Sbjct: 361 LLVWTLGPLLAEQFGIALQPAWPAAGELQLLLWTVLAGLVASLLPALRAYRLSLSDGLTP 420 Query: 461 RI 462 RI Sbjct: 421 RI 422 >ref|YP_004154039.1| hypothetical protein Varpa_1718 [Variovorax paradoxus EPS] gb|ADU35928.1| protein of unknown function DUF214 [Variovorax paradoxus EPS] Length = 420 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 264/422 (62%), Positives = 327/422 (77%), Gaps = 2/422 (0%) Query: 41 MKLLLRLAARSAWNRRFTLGLMLLAIALSTTMLLGIERVRHEVRAGFSQSVSGTDLVVGA 100 M L +A RSAWNRRFTL L + +IALST +LLG+ER+R E+R F+ SVSGTDL+VGA Sbjct: 1 MNALFSIAWRSAWNRRFTLALTVFSIALSTFLLLGVERIRTELRENFASSVSGTDLIVGA 60 Query: 101 RTSPIQLMLYAIFRIGGATNNMGWDSAQTLARNPAVAWTIPISLGDSHRGFPVLATNGDY 160 RT QL+LY++FRIG ATNN+ W S Q LA + V W +P+SLGDSHRGF VLAT+ +Y Sbjct: 61 RTGSTQLLLYSVFRIGAATNNISWKSVQALAAHQGVDWVVPLSLGDSHRGFAVLATSPEY 120 Query: 161 FTHFRYGSGQSLKLAQGQPFAGVFDAVLGADVADKLHYHLGDVIVLAHGMGGLGLTQHAD 220 F FRYG Q LKL +G+PF+ +FDAV+GA+VADKL YH+G I LAHG G L + +HAD Sbjct: 121 FARFRYGDKQLLKLREGKPFSELFDAVVGAEVADKLGYHVGQKITLAHGSGELNVAEHAD 180 Query: 221 KPFKVVGILARTGTPVDRTVHIGLDGMQAIHLDWEGGAPLPGVHIPAEFVKKFNLTPTSI 280 KPF VVG+LARTGTPVDRTVHIGL+ M+AIHL+W GGAP+PGV IPAE V+KF+LTP ++ Sbjct: 181 KPFTVVGVLARTGTPVDRTVHIGLEAMEAIHLEWVGGAPMPGVKIPAEQVRKFDLTPKNV 240 Query: 281 TAVLVGLKSRARVFAVQRAIADGDGFKEPLMAVLPGVALDQLWDVVGIGENALLVVSGMV 340 TA LVGLK+RA VF VQR I+ +G EPLMA+LPGVALD+LW V+GIGENALL++S +V Sbjct: 241 TAALVGLKNRAAVFGVQRWISTYNG--EPLMAILPGVALDELWSVIGIGENALLLMSALV 298 Query: 341 VVVGLAGLVAAILASLGERRRELAVLRSVGARPGDVFLLLALEGLAVMLAGVVLGAVMMT 400 +V LAGLV+ ++A L ERRRELAVLR+VGA V LLALEG V + GV G VM Sbjct: 299 ALVSLAGLVSVVMAGLNERRRELAVLRAVGAGLRHVLALLALEGAMVTVLGVAFGVVMAV 358 Query: 401 LALFALGPFLSAQFGVTLHPALPAAGELQLLGWTVLAGFVASLLPGLRAYRLSLADGLTP 460 L + L P+L +QFG+TL + P E L+ ++AG++ASLLPG+RAYRLSLADGL+P Sbjct: 359 LGIALLSPWLQSQFGLTLSLSEPTLNEWLLMASLLVAGWLASLLPGIRAYRLSLADGLSP 418 Query: 461 RI 462 RI Sbjct: 419 RI 420 >ref|YP_002943480.1| hypothetical protein Vapar_1563 [Variovorax paradoxus S110] gb|ACS18214.1| protein of unknown function DUF214 [Variovorax paradoxus S110] Length = 420 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 265/422 (62%), Positives = 328/422 (77%), Gaps = 2/422 (0%) Query: 41 MKLLLRLAARSAWNRRFTLGLMLLAIALSTTMLLGIERVRHEVRAGFSQSVSGTDLVVGA 100 MK L +A RSAWNRRFTL L + +IALST +LLG+ER+R E+R F+ SVSGTDL+VGA Sbjct: 1 MKALFSIAWRSAWNRRFTLALTVFSIALSTFLLLGVERIRTELRENFASSVSGTDLIVGA 60 Query: 101 RTSPIQLMLYAIFRIGGATNNMGWDSAQTLARNPAVAWTIPISLGDSHRGFPVLATNGDY 160 RT QL+LY++FRIG ATNN+ W S Q LA +P V W +P+SLGDSHRGF VLAT+ +Y Sbjct: 61 RTGATQLLLYSVFRIGAATNNISWKSVQALAAHPGVDWVVPLSLGDSHRGFAVLATSPEY 120 Query: 161 FTHFRYGSGQSLKLAQGQPFAGVFDAVLGADVADKLHYHLGDVIVLAHGMGGLGLTQHAD 220 F FRYG+ Q L L +G+PF+ +FDAV+GA+VADKL YH+G I LAHG G L ++HAD Sbjct: 121 FARFRYGNRQPLALREGKPFSALFDAVVGAEVADKLGYHVGQRITLAHGSGELNASEHAD 180 Query: 221 KPFKVVGILARTGTPVDRTVHIGLDGMQAIHLDWEGGAPLPGVHIPAEFVKKFNLTPTSI 280 KPF VVG+LARTGTPVDRTVHIGL+ M+AIHL+W GGAP+PGV IPAE V+KF+LTP ++ Sbjct: 181 KPFTVVGVLARTGTPVDRTVHIGLEAMEAIHLEWVGGAPMPGVKIPAEQVRKFDLTPKNV 240 Query: 281 TAVLVGLKSRARVFAVQRAIADGDGFKEPLMAVLPGVALDQLWDVVGIGENALLVVSGMV 340 TA LVGLK+R+ VF VQR I+ G EPLMA+LPGVALD+LW V+GIGENALL++S +V Sbjct: 241 TAALVGLKNRSAVFGVQRWISTYTG--EPLMAILPGVALDELWSVIGIGENALLLMSALV 298 Query: 341 VVVGLAGLVAAILASLGERRRELAVLRSVGARPGDVFLLLALEGLAVMLAGVVLGAVMMT 400 +V LAGLV+ ++A L ERRRELAVLR+VGA V LLALEG V + GV G VM Sbjct: 299 ALVSLAGLVSVVMAGLNERRRELAVLRAVGAGLRHVLALLALEGAMVTVLGVAFGVVMAV 358 Query: 401 LALFALGPFLSAQFGVTLHPALPAAGELQLLGWTVLAGFVASLLPGLRAYRLSLADGLTP 460 L + L P+L AQFG+TL + P E L+ ++AG++ASLLPG+RAYRLSLADGL+P Sbjct: 359 LGIALLAPWLQAQFGLTLSLSPPTLNEWLLMASLLVAGWLASLLPGIRAYRLSLADGLSP 418 Query: 461 RI 462 RI Sbjct: 419 RI 420 >ref|YP_003169256.1| hypothetical protein CAP2UW1_4085 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV37327.1| protein of unknown function DUF214 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 424 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 280/426 (65%), Positives = 330/426 (77%), Gaps = 8/426 (1%) Query: 41 MKLLLRLAARSAWNRRFTLGLMLLAIALSTTMLLGIERVRHEVRAGFSQSVSGTDLVVGA 100 M L+ LA RSAWNRR+ L LL+IAL+T++LLG+ER+R +VR FSQSVSGTDLVVGA Sbjct: 1 MHYLIVLAVRSAWNRRYPLTFTLLSIALATSLLLGVERLRQDVRESFSQSVSGTDLVVGA 60 Query: 101 RTSPIQLMLYAIFRIGGATNNMGWDSAQTLARNPAVAWTIPISLGDSHRGFPVLATNGDY 160 R SPIQLMLYA+FRIG A NM W SAQ LA +PAVAW+IP+SLGDSHRGFPVL T+ DY Sbjct: 61 RASPIQLMLYAVFRIGEAAQNMRWTSAQKLASHPAVAWSIPLSLGDSHRGFPVLGTSVDY 120 Query: 161 FTHFRYGSGQSLKLAQGQPFAGVFDAVLGADVADKLHYHLGDVIVLAHGMGGLGLTQHAD 220 FTHFRYG Q L++ G PFAGVFDAVLGA+VA KL Y LG+ IVL HG GL H D Sbjct: 121 FTHFRYGDRQPLRMRAGVPFAGVFDAVLGAEVARKLGYQLGEKIVLTHGSSGLEGAAHGD 180 Query: 221 KPFKVVGILARTGTPVDRTVHIGLDGMQAIHLDWEGGAPLPGVHIPAEFVKKFNLTPTSI 280 KPF VVGILA TGTPVDRTVHI L GM+AIHLDW+GGAP+PG IP + V+KF+LTP +I Sbjct: 181 KPFFVVGILAPTGTPVDRTVHITLAGMEAIHLDWQGGAPVPGFSIPPDLVRKFDLTPKTI 240 Query: 281 TAVLVGLKSRARVFAVQRAIADGDGFKEPLMAVLPGVALDQLWDVVGIGENALLVVSGMV 340 TA L+GLK R VFA+QRAIAD E LM V+PGV LDQLW+VVG GE ALL+VS MV Sbjct: 241 TAQLIGLKQRGDVFAMQRAIADAG--DEALMGVMPGVTLDQLWEVVGQGEQALLLVSWMV 298 Query: 341 VVVGLAGLVAAILASLGERRRELAVLRSVGARPGDVFLLLALEGLAVMLAGVVLGAVMMT 400 +VGL GLVA ILASL RRRELA+LRSVGARP ++ LLLALEG +V + G+V+G +++ Sbjct: 299 ALVGLGGLVAVILASLDARRRELAILRSVGARPRELLLLLALEGFSVTVGGIVVGVALLS 358 Query: 401 LALFALGPFLSAQFGVTLHPALPAAGE-----LQLLGWTVLAGFVASLLPGLRAYRLSLA 455 LF P++ A +G+ L+ L +G+ +LLGW +LAG VASLLPGLRAYRLSL Sbjct: 359 AVLFFATPWIEAHYGIALN-GLNLSGDDATSLAELLGWILLAGSVASLLPGLRAYRLSLI 417 Query: 456 DGLTPR 461 DGLTPR Sbjct: 418 DGLTPR 423 >ref|YP_544813.1| hypothetical protein Mfla_0704 [Methylobacillus flagellatus KT] gb|ABE48972.1| protein of unknown function DUF214 [Methylobacillus flagellatus KT] Length = 423 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 250/422 (59%), Positives = 310/422 (73%), Gaps = 3/422 (0%) Query: 42 KLLLRLAARSAWNRRFTLGLMLLAIALSTTMLLGIERVRHEVRAGFSQSVSGTDLVVGAR 101 K LL+LA SAWNR+ TLG+ ++AIALS +LLG+ER+R +VR GFS SVSGTDLVVGAR Sbjct: 4 KYLLKLAMHSAWNRKLTLGMTVVAIALSVMLLLGVERLREQVRQGFSLSVSGTDLVVGAR 63 Query: 102 TSPIQLMLYAIFRIGGATNNMGWDSAQTLARNPAVAWTIPISLGDSHRGFPVLATNGDYF 161 TSP+QLMLYAIF IG ATNN+ W S + L ++P VAW++PISLGDSH GF VL T DYF Sbjct: 64 TSPVQLMLYAIFHIGEATNNISWASYEKLKQHPTVAWSVPISLGDSHHGFAVLGTTQDYF 123 Query: 162 THFRYGSGQSLKLAQGQPFAGVFDAVLGADVADKLHYHLGDVIVLAHGMGGL-GLTQHAD 220 HFRYG L+LA GQPF FDAVLGA VA +L Y++G I L+HGMGG L QH D Sbjct: 124 RHFRYGDHLPLELASGQPFVATFDAVLGASVAKQLGYNIGSRITLSHGMGGANALAQHGD 183 Query: 221 KPFKVVGILARTGTPVDRTVHIGLDGMQAIHLDWEGGAPLPGVHIPAEFVKKFNLTPTSI 280 KPF VVGIL TGTPVDRTVH+ L+ + AIHLDW GG+P PG IP + V+KF+L P + Sbjct: 184 KPFTVVGILKPTGTPVDRTVHVSLEAISAIHLDWVGGSPAPGFQIPPQHVQKFDLQPKDV 243 Query: 281 TAVLVGLKSRARVFAVQRAIADGDGFKEPLMAVLPGVALDQLWDVVGIGENALLVVSGMV 340 TAVL+GLKSRA VF QR + + EPL+AV+PG+AL+QLW VVG+ E +L+ VS +V Sbjct: 244 TAVLIGLKSRAAVFRTQRMVNESK--DEPLLAVMPGLALEQLWQVVGVAEKSLMAVSAIV 301 Query: 341 VVVGLAGLVAAILASLGERRRELAVLRSVGARPGDVFLLLALEGLAVMLAGVVLGAVMMT 400 VVV L+GLVA I+A L ERRRELA+LR+VGA+P ++ LLL EG+ V LA +V+G + +T Sbjct: 302 VVVSLSGLVAVIMAGLNERRRELAILRAVGAQPKEILLLLIYEGIFVTLASIVIGLLALT 361 Query: 401 LALFALGPFLSAQFGVTLHPALPAAGELQLLGWTVLAGFVASLLPGLRAYRLSLADGLTP 460 +A P + FG+ + P+ EL+LL VL +ASL P AYRLSLADGLTP Sbjct: 362 IATLCAAPIMQTHFGINMTVGWPSLEELRLLAAMVLISILASLFPAWMAYRLSLADGLTP 421 Query: 461 RI 462 R+ Sbjct: 422 RL 423