BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3806.p (197 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776557.1| hypothetical protein Hsero_3167 [Herbaspiril... 273 1e-71 ref|YP_003169254.1| metal ion ABC transporter periplasmic protei... 121 5e-26 ref|ZP_08142331.1| hypothetical protein G1E_23917 [Pseudomonas s... 116 2e-24 ref|NP_742672.1| hypothetical protein PP_0508 [Pseudomonas putid... 112 3e-23 gb|ADR58241.1| Hypothetical protein, conserved [Pseudomonas puti... 110 9e-23 >ref|YP_003776557.1| hypothetical protein Hsero_3167 [Herbaspirillum seropedicae SmR1] gb|ADJ64649.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 193 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 142/171 (83%), Positives = 159/171 (92%) Query: 27 DEGHDHHGNHPAHVHGVGKLDVALEGNTLTLHLDSPLINLVGFEHAASSGKDKDTVRAAV 86 D+ HDHHGNHPAHVHGVGKLDVALEGNTLTLHLD+PL+N+VGFEHAASS KDKDTVRAA Sbjct: 23 DDAHDHHGNHPAHVHGVGKLDVALEGNTLTLHLDTPLVNVVGFEHAASSSKDKDTVRAAA 82 Query: 87 KNLREVNRMFATDAAAQCKPAEVQLESAVLTPALLGEKTPASSEPAPSDGHADLDGDFTL 146 + LREVNR+FATDAAAQCK AE+QLESA L+PALLGEK AS++ AP DGHADLDGDFTL Sbjct: 83 RTLREVNRIFATDAAAQCKSAEIQLESAALSPALLGEKAAASAQDAPKDGHADLDGDFTL 142 Query: 147 VCATPGALNTVDVSGLFAAFPGFQRIDVQLATPKKQGAVQLVPGSALIPLN 197 VCA+PGAL T+D++GLF+AFPGFQRIDVQLATPKKQGA+QL PG+ALIPLN Sbjct: 143 VCASPGALTTLDLNGLFSAFPGFQRIDVQLATPKKQGALQLTPGNALIPLN 193 >ref|YP_003169254.1| metal ion ABC transporter periplasmic protein surface adhesin [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV37325.1| ABC-type metal ion transport system, periplasmic component/surface adhesin [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 192 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 71/162 (43%), Positives = 96/162 (59%), Gaps = 11/162 (6%) Query: 38 AHVHGVGKLDVALEGNTLTLHLDSPLINLVGFEHAASSGKDKDTVRAAVKNLREVNRMFA 97 AHVHGV +L+V ++ +TL + L+SPL NL+GFE S K+ D VR LR+ +++F Sbjct: 25 AHVHGVAELNVGVDKDTLRIALESPLENLLGFERVPKSDKELDKVRRMASQLRQADKLFL 84 Query: 98 TDAAAQCKPAEVQLESAVLTPALLGE----------KTPASSEPAPSDGHADLDGDFTLV 147 A CK V+LESAVL PALLGE + +P HADLDG+F Sbjct: 85 PTPGAGCKLVNVKLESAVLDPALLGEAPVAAASPGQAAARTPQPGAKPAHADLDGEFVFQ 144 Query: 148 CATPGALNTVDVSGLFAAFPGFQRIDVQLATPKKQGAVQLVP 189 CA P AL ++V LF AFPG+++I Q+ T K+Q A +L P Sbjct: 145 CAQPAALQGLEVK-LFDAFPGYRQIRAQVVTAKRQSAARLSP 185 >ref|ZP_08142331.1| hypothetical protein G1E_23917 [Pseudomonas sp. TJI-51] gb|EGB96372.1| hypothetical protein G1E_23917 [Pseudomonas sp. TJI-51] Length = 193 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 69/161 (42%), Positives = 92/161 (57%), Gaps = 2/161 (1%) Query: 34 GNHPAHVHGVGKLDVALEGNTLTLHLDSPLINLVGFEHAASSGKDKDTVRAAVKNLREVN 93 G AH HGV KL+V L+GNTL L LDSP +NLVGFEHAASS DK V A + L + Sbjct: 33 GTLGAHEHGVAKLNVVLDGNTLELELDSPAMNLVGFEHAASSDADKAKVAAVRQQLEQPL 92 Query: 94 RMFATDAAAQCKPAEVQLESAVLTPALLGEKTPASSEPAPSDGHADLDGDFTLVCATPGA 153 ++F +AA CK + LES + A E E H+D++ + L CATP Sbjct: 93 KLFGLASAAGCKEDQQALESPLFGDAAKAEDD--GDEHEKGHMHSDINAHYQLTCATPEK 150 Query: 154 LNTVDVSGLFAAFPGFQRIDVQLATPKKQGAVQLVPGSALI 194 L +D++ L+ AFP Q+I+VQL P Q V+ P A++ Sbjct: 151 LTQLDLAPLYKAFPATQKINVQLIGPNGQKGVETSPAKAMV 191 >ref|NP_742672.1| hypothetical protein PP_0508 [Pseudomonas putida KT2440] gb|AAN66136.1|AE016242_4 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 193 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 68/161 (42%), Positives = 89/161 (55%) Query: 34 GNHPAHVHGVGKLDVALEGNTLTLHLDSPLINLVGFEHAASSGKDKDTVRAAVKNLREVN 93 G+ AH HGV KL+ L+GNTL L LDSP +NLVGFEHAASS DK V A + L + Sbjct: 31 GSLGAHEHGVAKLNAVLDGNTLELELDSPAMNLVGFEHAASSDADKAKVAAVRQQLEQPL 90 Query: 94 RMFATDAAAQCKPAEVQLESAVLTPALLGEKTPASSEPAPSDGHADLDGDFTLVCATPGA 153 ++F AAA CK + LES + A + E H+D+ + L CA P Sbjct: 91 KLFGLSAAADCKEEQQALESPLFGDAAKADDDGDEHEHEHDHQHSDIGAHYQLTCANPDK 150 Query: 154 LNTVDVSGLFAAFPGFQRIDVQLATPKKQGAVQLVPGSALI 194 L +D++ LF AFP Q+I+VQL P Q V+ P A + Sbjct: 151 LTQLDLAPLFKAFPATQKINVQLIGPNGQKGVETTPTKAAV 191 >gb|ADR58241.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1] Length = 193 Score = 110 bits (276), Expect = 9e-23, Method: Composition-based stats. Identities = 69/162 (42%), Positives = 90/162 (55%), Gaps = 6/162 (3%) Query: 34 GNHPAHVHGVGKLDVALEGNTLTLHLDSPLINLVGFEHAASSGKDKDTVRAAVKNLREVN 93 G+ AH HGV KL+ L+GNTL L LDSP +NLVGFEHAASS D V A + L + Sbjct: 35 GSLGAHEHGVAKLNAVLDGNTLELELDSPAMNLVGFEHAASSDADNAKVAAVRQQLEQPL 94 Query: 94 RMFATDAAAQCKPAEVQLESAVLTPALLGEKTPASSE-PAPSDGHADLDGDFTLVCATPG 152 ++F AAA CK + LES L G+ + A E H+D+ + L CA P Sbjct: 95 KLFGLSAAAGCKEDQQALES-----PLFGDASKADDEGDEHGHQHSDIGAHYQLTCANPD 149 Query: 153 ALNTVDVSGLFAAFPGFQRIDVQLATPKKQGAVQLVPGSALI 194 L +D++ LF AFP Q+I+VQL P Q V+ P A + Sbjct: 150 KLTELDLAPLFKAFPATQKINVQLIGPNGQKGVETTPAKAAV 191