BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3804.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776555.1| Mn2+/Zn2+ ABC transporters permease [Herbasp... 413 e-113 ref|YP_523308.1| hypothetical protein Rfer_2052 [Rhodoferax ferr... 317 2e-84 emb|CBA33745.1| hypothetical protein Csp_B20590 [Curvibacter put... 305 4e-81 ref|YP_981380.1| ABC-3 protein [Polaromonas naphthalenivorans CJ... 297 2e-78 ref|ZP_05977124.1| ABC transporter, permease protein [Neisseria ... 243 2e-62 >ref|YP_003776555.1| Mn2+/Zn2+ ABC transporters permease [Herbaspirillum seropedicae SmR1] gb|ADJ64647.1| ABC-type Mn2+/Zn2+ transport systems, permease component protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 281/295 (95%), Positives = 286/295 (96%) Query: 1 MSVLSTLQTLAIAPFLEFSFMRRALVAAFALALGSAPLGVLLTLRRMSLFGEALSHAVLP 60 MS+LS + LA+ PF EFSFMRRALVAAFALALGSAPLGVLLTLRRMSLFGEALSHAVLP Sbjct: 1 MSLLSLMHQLAVEPFQEFSFMRRALVAAFALALGSAPLGVLLTLRRMSLFGEALSHAVLP 60 Query: 61 GVAVGFIFFGLSLPALSIGGFAAGVLVVAVAGWISRHTELKEDASLAAIYVVALALGVIL 120 GVAVGFIFFGLSLPALSIGGFAAGVLVVAVAGWISRHTELKEDASLAAIYVVALALGVIL Sbjct: 61 GVAVGFIFFGLSLPALSIGGFAAGVLVVAVAGWISRHTELKEDASLAAIYVVALALGVIL 120 Query: 121 ISRHGTQLDLLHILFGNVLGVDSEGLVLIAGVASASVLGIAALYRGLLLESFDPSYMAVG 180 ISRHGTQLDLLHILFGNVLGVDSEGLVLIAGVASASVLGIAALYRGLLLESFDPSYMAVG Sbjct: 121 ISRHGTQLDLLHILFGNVLGVDSEGLVLIAGVASASVLGIAALYRGLLLESFDPSYMAVG 180 Query: 181 GGRSGGAIYQQVFLMLVVMNLVASFQTLGTLMAVGLMMLPAVSARLWHDTLPAQLCNSVL 240 GGRSGGAIYQQVFLMLVVMNLVASFQTLGTLMAVGLMMLPAVSARLWHD+LPAQLCNSVL Sbjct: 181 GGRSGGAIYQQVFLMLVVMNLVASFQTLGTLMAVGLMMLPAVSARLWHDSLPAQLCNSVL 240 Query: 241 QAALAGYAGLLISYYASVPSGPVIIVCAGVLYAASLLLAPRGWLPRLLRRPHLQA 295 QAALAGYAGLL+SYYASVPSGPVIIVCAG LY SLL APRGWLPRLLRRPHLQA Sbjct: 241 QAALAGYAGLLVSYYASVPSGPVIIVCAGALYVLSLLFAPRGWLPRLLRRPHLQA 295 >ref|YP_523308.1| hypothetical protein Rfer_2052 [Rhodoferax ferrireducens T118] gb|ABD69777.1| ABC-3 [Rhodoferax ferrireducens T118] Length = 299 Score = 317 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 206/295 (69%), Positives = 243/295 (82%), Gaps = 3/295 (1%) Query: 1 MSVLSTLQTLAIAPFLEFSFMRRALVAAFALALGSAPLGVLLTLRRMSLFGEALSHAVLP 60 M+ TL ++ PF EF+FMRRALVA ALA+ +APLGV LTLRRMSL G+ALSHAVLP Sbjct: 2 MAWYQTLWDFSVGPFAEFAFMRRALVATLALAISAAPLGVFLTLRRMSLLGDALSHAVLP 61 Query: 61 GVAVGFIFFGLSLPALSIGGFAAGVLVVAVAGWISRHTELKEDASLAAIYVVALALGVIL 120 GVAVGF+ FGLSLPA+++GG AG+ V A+AG +SR T LKEDASLAAIY+VALALGV L Sbjct: 62 GVAVGFMLFGLSLPAMALGGVLAGLAVAAIAGVVSRATRLKEDASLAAIYLVALALGVTL 121 Query: 121 ISRHGTQLDLLHILFGNVLGVDSEGLVLIAGVASASVLGIAALYRGLLLESFDPSYMAVG 180 ISR G+QLDLLHILFG+ LGVD++GL+L+AGVAS SV+ +AALYRGL+LE+FDP ++A Sbjct: 122 ISRQGSQLDLLHILFGSALGVDAQGLLLVAGVASVSVIALAALYRGLVLETFDPVFLAAS 181 Query: 181 GGRS---GGAIYQQVFLMLVVMNLVASFQTLGTLMAVGLMMLPAVSARLWHDTLPAQLCN 237 GR G I+QQ FLMLVV+NLVA FQTLGTLMAVGLMMLPAVS+RLWHD+L AQL N Sbjct: 182 AGRGWSRRGWIWQQSFLMLVVINLVAGFQTLGTLMAVGLMMLPAVSSRLWHDSLSAQLLN 241 Query: 238 SVLQAALAGYAGLLISYYASVPSGPVIIVCAGVLYAASLLLAPRGWLPRLLRRPH 292 + QAALAG AGLL+SY+ PSGP II CAGVLY SLLL+P GWLP +L+RPH Sbjct: 242 ASAQAALAGVAGLLLSYHLDTPSGPTIIGCAGVLYGLSLLLSPGGWLPTVLKRPH 296 >emb|CBA33745.1| hypothetical protein Csp_B20590 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 292 Score = 305 bits (782), Expect = 4e-81, Method: Composition-based stats. Identities = 198/281 (70%), Positives = 231/281 (82%) Query: 12 IAPFLEFSFMRRALVAAFALALGSAPLGVLLTLRRMSLFGEALSHAVLPGVAVGFIFFGL 71 I+PF EF+FMRRALVA AL+L +APLGV LTLRRMSL G+ALSHAVLPGVA+GF+ GL Sbjct: 9 ISPFAEFAFMRRALVATLALSLSAAPLGVFLTLRRMSLLGDALSHAVLPGVAIGFMVSGL 68 Query: 72 SLPALSIGGFAAGVLVVAVAGWISRHTELKEDASLAAIYVVALALGVILISRHGTQLDLL 131 SL A+++GG AG+LV ++G +SR T LKEDASLAAIY+VALALGV LI+ HGTQLDLL Sbjct: 69 SLTAMAVGGVVAGLLVAGMSGAVSRFTTLKEDASLAAIYLVALALGVTLIAGHGTQLDLL 128 Query: 132 HILFGNVLGVDSEGLVLIAGVASASVLGIAALYRGLLLESFDPSYMAVGGGRSGGAIYQQ 191 HILFG+ LGVD +GL+L+AGVA+ SVL +A +YRGL+LE+FDP ++A R ++QQ Sbjct: 129 HILFGSALGVDGDGLLLVAGVATFSVLTLALMYRGLVLETFDPVFLAAHRSRVPPWVWQQ 188 Query: 192 VFLMLVVMNLVASFQTLGTLMAVGLMMLPAVSARLWHDTLPAQLCNSVLQAALAGYAGLL 251 FLMLVV+NLVA FQTLGTLMAVGLMMLPAVSARLWHDTLPAQL N+ QAALAG AGLL Sbjct: 189 GFLMLVVLNLVAGFQTLGTLMAVGLMMLPAVSARLWHDTLPAQLLNASAQAALAGVAGLL 248 Query: 252 ISYYASVPSGPVIIVCAGVLYAASLLLAPRGWLPRLLRRPH 292 +SY+ PSGP II CAG LYA SLLLAP GWLPR R H Sbjct: 249 LSYHFDTPSGPTIIGCAGALYATSLLLAPGGWLPRRWMRSH 289 >ref|YP_981380.1| ABC-3 protein [Polaromonas naphthalenivorans CJ2] gb|ABM36459.1| ABC-3 protein [Polaromonas naphthalenivorans CJ2] Length = 294 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 201/292 (68%), Positives = 237/292 (81%), Gaps = 2/292 (0%) Query: 1 MSVLSTLQTLAIAPFLEFSFMRRALVAAFALALGSAPLGVLLTLRRMSLFGEALSHAVLP 60 M+ + L A +PF EF+FMRRALVA AL+L +APLGV LTLRRMSL G+ALSHAVLP Sbjct: 2 MAFAAWLWDAAFSPFAEFAFMRRALVATLALSLSAAPLGVFLTLRRMSLLGDALSHAVLP 61 Query: 61 GVAVGFIFFGLSLPALSIGGFAAGVLVVAVAGWISRHTELKEDASLAAIYVVALALGVIL 120 GVA+GF+ GLSL A+++GG AG+ V A+AG ++R T LKEDASLAAIY+VALALGV L Sbjct: 62 GVAIGFMLGGLSLSAMALGGVVAGMGVAALAGLVTRFTTLKEDASLAAIYLVALALGVTL 121 Query: 121 ISRHGTQLDLLHILFGNVLGVDSEGLVLIAGVASASVLGIAALYRGLLLESFDPSYMAVG 180 IS HGTQLDLLHILFG+ LGVD+ GL+++A VAS SVL +AA+YRGL+LESFDP ++A Sbjct: 122 ISGHGTQLDLLHILFGSALGVDTPGLLMVASVASVSVLLLAAMYRGLVLESFDPVFLAAA 181 Query: 181 GGRSGGAIYQQVFLMLVVMNLVASFQTLGTLMAVGLMMLPAVSARLWHDTLPAQLCNSVL 240 G R G ++QQ FLMLVV+NLVA FQTLGTLMAVGLMMLPAVS+RLWHDTLPAQL N+ Sbjct: 182 GRR--GWLWQQGFLMLVVINLVAGFQTLGTLMAVGLMMLPAVSSRLWHDTLPAQLLNASA 239 Query: 241 QAALAGYAGLLISYYASVPSGPVIIVCAGVLYAASLLLAPRGWLPRLLRRPH 292 QA LA AGLL+SY+ PSGP II CAG LY ASLL+AP GWLPR+L R H Sbjct: 240 QAMLASVAGLLLSYHLDTPSGPTIIGCAGALYFASLLVAPGGWLPRVLSRTH 291 >ref|ZP_05977124.1| ABC transporter, permease protein [Neisseria mucosa ATCC 25996] gb|EFC89040.1| ABC transporter, permease protein [Neisseria mucosa ATCC 25996] Length = 291 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 157/276 (56%), Positives = 206/276 (74%), Gaps = 2/276 (0%) Query: 7 LQTLAIAPFLEFSFMRRALVAAFALALGSAPLGVLLTLRRMSLFGEALSHAVLPGVAVGF 66 L L I+PF EF FMR AL + F LAL +AP+GV L +RRMS+ G+ALSHAVLPG A+G+ Sbjct: 3 LYDLLISPFAEFDFMRYALASVFCLALSAAPVGVFLVMRRMSMVGDALSHAVLPGAAIGY 62 Query: 67 IFFGLSLPALSIGGFAAGVLVVAVAGWISRHTELKEDASLAAIYVVALALGVILISRHGT 126 +F GLSLPA+S+GGFAAG+L+ +AG SR T LKEDA+ AA Y+ +LA+GV+L+S++G+ Sbjct: 63 MFAGLSLPAMSVGGFAAGLLMALLAGLASRFTSLKEDANFAAFYLSSLAIGVVLVSKNGS 122 Query: 127 QLDLLHILFGNVLGVDSEGLVLIAGVASASVLGIAALYRGLLLESFDPSYMAVGGGRSGG 186 +DLLH+LFG+VL VD L LIA AS +V +A +YR L+LES DP ++ GG+ G Sbjct: 123 SVDLLHLLFGSVLSVDIPALQLIAASASVTVTALAIIYRPLVLESIDPLFLKAVGGK--G 180 Query: 187 AIYQQVFLMLVVMNLVASFQTLGTLMAVGLMMLPAVSARLWHDTLPAQLCNSVLQAALAG 246 + VFL+LVVMNLVA FQ LGTLM+VGLMMLP+++ARLW ++ A + SV A + G Sbjct: 181 GFWHVVFLILVVMNLVAGFQALGTLMSVGLMMLPSITARLWAKSMGALMALSVFIALVCG 240 Query: 247 YAGLLISYYASVPSGPVIIVCAGVLYAASLLLAPRG 282 +AGLL SY+ +PSGP II+C GVLYA SL+ G Sbjct: 241 FAGLLFSYHVEIPSGPAIILCCGVLYAVSLVFGGEG 276