BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3803.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776554.1| Mn2+/Zn2+ ABC transporter periplasmic protei... 513 e-143 dbj|BAK53915.1| periplasmic solute binding protein [Chitiniphilu... 331 1e-88 ref|YP_981379.1| periplasmic solute-binding protein [Polaromonas... 327 1e-87 emb|CBA33747.1| hypothetical protein Csp_B20600 [Curvibacter put... 316 2e-84 ref|YP_004846938.1| cation ABC transporter periplasmic cation-bi... 298 7e-79 >ref|YP_003776554.1| Mn2+/Zn2+ ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64646.1| ABC-type Mn2+/Zn2+ transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 280/312 (89%), Positives = 297/312 (95%), Gaps = 2/312 (0%) Query: 1 MKLFRPLSALLAALAVAASLPAAAAERIPVLASFSILGDVVANVGGDRIAVSTLVGPDED 60 MKL+RPLS LLAALA+A ++PAAAAERIPVLASFSILGDVVANVGGDRIAVSTLVGPDED Sbjct: 1 MKLYRPLSMLLAALALAVNVPAAAAERIPVLASFSILGDVVANVGGDRIAVSTLVGPDED 60 Query: 61 AHVFQPAPDDIKAVSRAKLIVVNGLGFEGWMERLAQSANYRGPIVVASAGIKPRERVGDD 120 AHVFQPAPDDIKAVSRA+L+VVNGLGFEGWMERLAQSANYRGPIVVASAGIK RERVG+D Sbjct: 61 AHVFQPAPDDIKAVSRARLVVVNGLGFEGWMERLAQSANYRGPIVVASAGIKARERVGED 120 Query: 121 EDDHAHGAGHEHHG--KDDPHAWQDPQNVIVYTRNIVTALAKLDPAGAEVYRKNGEAYVA 178 ED+H H H KDDPHAWQDPQNV+VYTRNIVTALAKLDPAGA VYRKNG+AY+A Sbjct: 121 EDEHGHDHAAAHEHHGKDDPHAWQDPQNVVVYTRNIVTALAKLDPAGAAVYRKNGDAYIA 180 Query: 179 KLQDLDAWAARQFSQIPDAKRKVITSHDAFEYFGARYKVRFLAAQGVSTDSEPSAREVAS 238 KLQDLDAWAARQF+QIPDAKRKVITSHDAFEYFGARY+VRFLAAQGVSTDSEPSARE+A+ Sbjct: 181 KLQDLDAWAARQFAQIPDAKRKVITSHDAFEYFGARYQVRFLAAQGVSTDSEPSAREIAA 240 Query: 239 LIRQIRSEKIKALFFENMSNPKLLQQIARESGTAPGGKLYADALSKPDGPAPDYLSLMRY 298 LIRQIR+EKIKALFFENMSNPKLLQQIARE+GTAPGGKLYADALSK DGPAPDYLSLMRY Sbjct: 241 LIRQIRTEKIKALFFENMSNPKLLQQIAREAGTAPGGKLYADALSKADGPAPDYLSLMRY 300 Query: 299 NITQLLEKIRLN 310 NITQLLEKIRLN Sbjct: 301 NITQLLEKIRLN 312 >dbj|BAK53915.1| periplasmic solute binding protein [Chitiniphilus shinanonensis] Length = 307 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 171/279 (61%), Positives = 220/279 (78%), Gaps = 1/279 (0%) Query: 26 ERIPVLASFSILGDVVANVGGDRIAVSTLVGPDEDAHVFQPAPDDIKAVSRAKLIVVNGL 85 +R+PV+ASFSILGD+VA VGG+R++V+TLVGPD+DAHVFQP P D + V+ A+L+VVNGL Sbjct: 24 DRLPVVASFSILGDLVAQVGGERVSVTTLVGPDQDAHVFQPRPSDARTVAGARLLVVNGL 83 Query: 86 GFEGWMERLAQSANYRGPIVVASAGIKPRERVGDDEDDHAHGAGHEHHGKDDPHAWQDPQ 145 GFEGW++RLA S+ +RG VV S GIKPR R+ D DDHA HG DPHAWQDP+ Sbjct: 84 GFEGWLDRLAASSGFRGTQVVLSQGIKPR-RMAHDHDDHAAHDHDHDHGGIDPHAWQDPR 142 Query: 146 NVIVYTRNIVTALAKLDPAGAEVYRKNGEAYVAKLQDLDAWAARQFSQIPDAKRKVITSH 205 NV++Y N+V AL++ DPAGA VYR+NG+ YVA+L +LD WAA QF+++P +RKVITSH Sbjct: 143 NVVLYVNNLVRALSQADPAGAAVYRRNGDHYVAQLLELDRWAAAQFAKVPQPRRKVITSH 202 Query: 206 DAFEYFGARYKVRFLAAQGVSTDSEPSAREVASLIRQIRSEKIKALFFENMSNPKLLQQI 265 DAF Y RY +RFLA QGVST++EPSAR+VA+LIRQI++E+I A+F ENMSNP+ LQ + Sbjct: 203 DAFGYLAQRYDIRFLAPQGVSTEAEPSARDVAALIRQIKAERISAVFVENMSNPRTLQLL 262 Query: 266 ARESGTAPGGKLYADALSKPDGPAPDYLSLMRYNITQLL 304 E+G PG +LYADALS GPA YL +MRYN+ ++ Sbjct: 263 GSEAGVKPGPRLYADALSVRSGPAGSYLEMMRYNVRTIV 301 >ref|YP_981379.1| periplasmic solute-binding protein [Polaromonas naphthalenivorans CJ2] gb|ABM36458.1| periplasmic solute binding protein [Polaromonas naphthalenivorans CJ2] Length = 307 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 179/303 (59%), Positives = 230/303 (75%), Gaps = 6/303 (1%) Query: 10 LLAALAVAASLPAA--AAERIPVLASFSILGDVVANVGGDRIAVSTLVGPDEDAHVFQPA 67 LL+ +A A LP A AAE +PV+ASFSILGD+V VGG+R++V+TLVGPDEDAHVF+P Sbjct: 9 LLSGIASACLLPGASFAAEPLPVVASFSILGDLVRVVGGERVSVTTLVGPDEDAHVFEPK 68 Query: 68 PDDIKAVSRAKLIVVNGLGFEGWMERLAQSANYRGPIVVASAGIKPRERVGDDEDDHAHG 127 P D +A+ +++L+VVNGLGFE W ++LA+SA Y+G VVAS G+K R + D Sbjct: 69 PADARAIVQSRLLVVNGLGFEPWAQKLAKSAGYKGETVVASQGVKSRAMAAEKGHDEK-- 126 Query: 128 AGHEHHGKDDPHAWQDPQNVIVYTRNIVTALAKLDPAGAEVYRKNGEAYVAKLQDLDAWA 187 GH+H + DPHAWQ+P NV +Y RNI ALAK DPAGA +Y+ N AYV +LQ LDAWA Sbjct: 127 -GHQHE-ETDPHAWQNPDNVALYARNIAAALAKADPAGATLYQANASAYVKELQTLDAWA 184 Query: 188 ARQFSQIPDAKRKVITSHDAFEYFGARYKVRFLAAQGVSTDSEPSAREVASLIRQIRSEK 247 QF+ +P A+RKVITSHDAF YF A+Y+V+FLA QGVSTD+EPSA+EVA LIRQI+ EK Sbjct: 185 KAQFATLPAARRKVITSHDAFGYFAAQYQVKFLAPQGVSTDAEPSAKEVAQLIRQIQREK 244 Query: 248 IKALFFENMSNPKLLQQIARESGTAPGGKLYADALSKPDGPAPDYLSLMRYNITQLLEKI 307 I+A+F ENMSNPKLL Q+++++G + G LY DALS GPA YL LMR+N+TQL+ + Sbjct: 245 IRAVFVENMSNPKLLAQLSKDAGVSAGPALYVDALSAAGGPADSYLKLMRHNVTQLVRGM 304 Query: 308 RLN 310 + N Sbjct: 305 QAN 307 >emb|CBA33747.1| hypothetical protein Csp_B20600 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 324 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 161/289 (55%), Positives = 212/289 (73%), Gaps = 6/289 (2%) Query: 22 AAAAERIPVLASFSILGDVVANVGGDRIAVSTLVGPDEDAHVFQPAPDDIKAVSRAKLIV 81 A AA+++PV ASFSILGD+V VGGDR+AV+TLVGP+EDAHVF+ P D K + ++L+V Sbjct: 42 AFAADKLPVTASFSILGDLVRVVGGDRVAVTTLVGPNEDAHVFEAKPADAKTLLASRLVV 101 Query: 82 VNGLGFEGWMERLAQSANYRGPIVVASAGIKPRERVGDDEDDHAHGAGHEHHGKDDPHAW 141 NGLGFE W +L +SA Y+G V A+ G+KPR E++ H AGH H + DPHAW Sbjct: 102 TNGLGFEPWAAKLIKSAGYKGETVAATKGVKPRHM----EEEKGH-AGHAHE-ETDPHAW 155 Query: 142 QDPQNVIVYTRNIVTALAKLDPAGAEVYRKNGEAYVAKLQDLDAWAARQFSQIPDAKRKV 201 Q+P NV++Y RNI L+K+D AGA Y+ N EAYV +LQ LD+W Q IP KRKV Sbjct: 156 QNPGNVVLYVRNIAAGLSKVDAAGAATYQANAEAYVKELQALDSWTKEQIVSIPADKRKV 215 Query: 202 ITSHDAFEYFGARYKVRFLAAQGVSTDSEPSAREVASLIRQIRSEKIKALFFENMSNPKL 261 ITSHDAF YF A+Y V+FLA QGV+T++EPSA++VA LI+QI+ EKI+A+F ENMS PKL Sbjct: 216 ITSHDAFGYFAAQYGVKFLAPQGVNTETEPSAKQVAQLIKQIQREKIRAVFVENMSTPKL 275 Query: 262 LQQIARESGTAPGGKLYADALSKPDGPAPDYLSLMRYNITQLLEKIRLN 310 + Q+++++G G LYADALS D P YL +MR+N+TQL+ ++LN Sbjct: 276 IAQLSKDAGATLGASLYADALSTADQPGATYLKMMRHNVTQLVAGMKLN 324 >ref|YP_004846938.1| cation ABC transporter periplasmic cation-binding protein [Pseudogulbenkiania sp. NH8B] dbj|BAK76524.1| cation ABC transporter, periplasmic cation-binding protein [Pseudogulbenkiania sp. NH8B] Length = 296 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 150/290 (51%), Positives = 205/290 (70%), Gaps = 5/290 (1%) Query: 19 SLPAAAAERIPVLASFSILGDVVANVGGDRIAVSTLVGPDEDAHVFQPAPDDIKAVSRAK 78 SLP A ++PV+ASFSI+ D+ +GGDR+ V +LVGP++DAHVFQPAP D+K ++ AK Sbjct: 12 SLPLWAWAKLPVVASFSIVADMTREIGGDRVEVVSLVGPNQDAHVFQPAPADVKRLAAAK 71 Query: 79 LIVVNGLGFEGWMERLAQSANYRGPIVVASAGIKPRERVGDDEDDHAHGAGHEHHGKDDP 138 + VVNGLGFEGWM RL +SA ++G ++ AS GI+P ++H H HG DP Sbjct: 72 VFVVNGLGFEGWMGRLTRSAGFKGTLIEASKGIQPLMVEEHGVEEHGH-----QHGGVDP 126 Query: 139 HAWQDPQNVIVYTRNIVTALAKLDPAGAEVYRKNGEAYVAKLQDLDAWAARQFSQIPDAK 198 HAWQDP+ V Y +NI L+K DP G VYR+ Y ++ ++D WAA+ F+ +P + Sbjct: 127 HAWQDPERVQTYIKNIAEGLSKADPEGQAVYRQRAADYGRRVSEMDQWAAKAFAAVPAVQ 186 Query: 199 RKVITSHDAFEYFGARYKVRFLAAQGVSTDSEPSAREVASLIRQIRSEKIKALFFENMSN 258 RKV+TSHDAF Y G RY ++ L+ QGVSTD+E SA+ VA L+RQ++ EK+KA+FFENMS+ Sbjct: 187 RKVLTSHDAFAYLGKRYGIQLLSPQGVSTDTEASAKAVAMLVRQVKKEKVKAIFFENMSD 246 Query: 259 PKLLQQIARESGTAPGGKLYADALSKPDGPAPDYLSLMRYNITQLLEKIR 308 +LL+Q+ARE+ G LYADALS P+GPA YL+L RYN+ +L+ R Sbjct: 247 KRLLEQLAREANVKAGAALYADALSAPNGPANSYLALFRYNVDTILKSFR 296