BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3801.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776552.1| LysR family transcription regulator protein ... 569 e-160 ref|YP_004754163.1| LysR family transcriptional regulator [Colli... 324 1e-86 ref|YP_003979429.1| LysR family transcriptional regulator [Achro... 232 6e-59 ref|ZP_06688054.1| LysR family transcriptional regulator [Achrom... 231 8e-59 gb|EFV83607.1| hypothetical protein HMPREF0005_02979 [Achromobac... 223 4e-56 >ref|YP_003776552.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64644.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 301/312 (96%), Positives = 308/312 (98%) Query: 1 MSSSLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKTLEEYFEQPLFLRQSRGV 60 M SSLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIK+LEEYFEQPLFLRQSRGV Sbjct: 1 MPSSLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGV 60 Query: 61 EPTEAALAFYAEVKASLDRIALAAEQLSLAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN 120 EPTEAAL+FYAEVKASLDRIALAAEQL+LAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN Sbjct: 61 EPTEAALSFYAEVKASLDRIALAAEQLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN 120 Query: 121 PRIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETHPI 180 PRIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGY+C+RFLDDVSVPLASPHFLETHPI Sbjct: 121 PRIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYECMRFLDDVSVPLASPHFLETHPI 180 Query: 181 RVPRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMG 240 RVPRDFVEVPLIHLSSRSAAWSQWL KAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMG Sbjct: 181 RVPRDFVEVPLIHLSSRSAAWSQWLSKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMG 240 Query: 241 TLALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSSADTNPALKTFITWLKQMGQASSFDP 300 TLALVDDDLAAGRLVRLFPEIVLHGEGYHML RS A+TNPALKTFITWLKQMGQASSFDP Sbjct: 241 TLALVDDDLAAGRLVRLFPEIVLHGEGYHMLCRSGAETNPALKTFITWLKQMGQASSFDP 300 Query: 301 QQTWPADFPGEY 312 Q+TWPADFPGEY Sbjct: 301 QRTWPADFPGEY 312 >ref|YP_004754163.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK63340.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 303 Score = 324 bits (830), Expect = 1e-86, Method: Composition-based stats. Identities = 168/297 (56%), Positives = 228/297 (76%), Gaps = 2/297 (0%) Query: 1 MSSSLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKTLEEYFEQPLFLRQSRGV 60 M + LPPLK L+VFEA VRT SLTLAA EL +THSAVSQQIK LE++F+Q LF+R RGV Sbjct: 1 MKTRLPPLKPLRVFEAVVRTGSLTLAAAELHLTHSAVSQQIKLLEQHFDQTLFVRGQRGV 60 Query: 61 EPTEAALAFYAEVKASLDRIALAAEQLSLAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN 120 EPT AA F+A+VKA LDRI+LAAEQL GK R++R+ PS+AMRWLIPRLS FQI+N Sbjct: 61 EPTAAARIFFADVKAGLDRISLAAEQLLNTGKVRIIRVSCTPSMAMRWLIPRLSSFQIEN 120 Query: 121 PRIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETHPI 180 PR+E+RVTT+ + + +K+PFDV+I RSP+ R+ Y+C+RFLDDV P+ASP +L+ HP Sbjct: 121 PRVEIRVTTS-TVAVDALKEPFDVLIRRSPMHRAEYECIRFLDDVLTPVASPRYLQQHPC 179 Query: 181 RVPRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMG 240 + P D ++ L+HLS+RS +W++W + GV V+ ++ G +YEH FLSLQAA TD GV +G Sbjct: 180 KTPADLLQASLLHLSTRSESWTRWFSEVGVPVKGQLSGQIYEHFFLSLQAALTDLGVALG 239 Query: 241 TLALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSSADTNPALKTFITWLKQMGQASS 297 +LA++++DLA G L+ LFP+++L +G+H+LYR S +P L FI WL+ G+ +S Sbjct: 240 SLAMIEEDLAHGSLLPLFPDLLLRDKGFHLLYRPS-HQDPQLANFIAWLQLKGKQTS 295 >ref|YP_003979429.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP16714.1| bacterial regulatory helix-turn-helix protein, LysR family protein 104 [Achromobacter xylosoxidans A8] Length = 302 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 130/295 (44%), Positives = 177/295 (60%), Gaps = 1/295 (0%) Query: 4 SLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKTLEEYFEQPLFLRQSRGVEPT 63 SLPPLKAL+VFEAA R RS T AA EL ITHSAVSQQI+ LEEY QPLF R++RGV Sbjct: 5 SLPPLKALRVFEAAARLRSFTAAADELSITHSAVSQQIRILEEYVGQPLFAREARGVALL 64 Query: 64 EAALAFYAEVKASLDRIALAAEQLSLAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNPRI 123 A A++ E++ASL+RIA A +L V+R+ A PS+ M+WLIPRLS FQ +P + Sbjct: 65 PCAQAYFPEIQASLERIAAATAKLKSPAYGGVLRVCATPSLTMKWLIPRLSAFQARHPGV 124 Query: 124 EVRVTTTMSEYFEDVKDP-FDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETHPIRV 182 +V++TT + + D DV+I + S CV LDD VP+ASP F+E + + Sbjct: 125 DVQLTTQGRSFLDRGGDTGSDVLIRHGYMAHSDLACVHCLDDFHVPVASPRFIERNRLAA 184 Query: 183 PRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMGTL 242 P D + PL+ ++ W +W A V V ++PG V++H FL +QAA D G+ + Sbjct: 185 PADCLGHPLLKIAGGMDHWPRWFALAKVDVPAQLPGPVFDHQFLCMQAAMNDLGIALAPW 244 Query: 243 ALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSSADTNPALKTFITWLKQMGQASS 297 L++DD+ A RL LF L G H LYR + + FI WL++ G+ S Sbjct: 245 CLLEDDIRADRLRPLFDGPQLPNAGIHALYRQDGPAAASAQLFIEWLREQGRDPS 299 >ref|ZP_06688054.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF75017.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 302 Score = 231 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 127/289 (43%), Positives = 175/289 (60%), Gaps = 1/289 (0%) Query: 2 SSSLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKTLEEYFEQPLFLRQSRGVE 61 + SLPPLKAL+VFEAA R RS T AA EL ITHSAVSQQI+ LE+Y QPLF R++RGV Sbjct: 3 AQSLPPLKALRVFEAAARLRSFTAAADELSITHSAVSQQIRVLEDYLGQPLFAREARGVA 62 Query: 62 PTEAALAFYAEVKASLDRIALAAEQLSLAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNP 121 A A++AEV+ SL+RI+ A +L V+R+ A PS+ M+WLIPRL+ FQ NP Sbjct: 63 LLPGAQAYFAEVQGSLERISTATAKLKAPSAGGVLRVCATPSLTMKWLIPRLATFQAANP 122 Query: 122 RIEVRVTTTMSEYFEDVKDP-FDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETHPI 180 ++V+++T + + DP DV+I + S CV LDD +P+ASP F+E + + Sbjct: 123 GVDVQLSTQARPFLDRGGDPGSDVLIRHGFMAHSDLACVHCLDDFHIPVASPRFIERNRL 182 Query: 181 RVPRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMG 240 P D + PL+ +S W +W A V V ++PG V++H FL +QAA D G+ + Sbjct: 183 YAPADCLAHPLLKISGGMDHWPRWFALAKVDVPPQLPGPVFDHQFLCMQAAMNDLGIALA 242 Query: 241 TLALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSSADTNPALKTFITWL 289 L++DD+ A RL LF + L G H LYR + + FI WL Sbjct: 243 PWCLLEDDIRADRLRPLFAQPQLPNAGIHALYRQDGPAAASAQLFIAWL 291 >gb|EFV83607.1| hypothetical protein HMPREF0005_02979 [Achromobacter xylosoxidans C54] Length = 302 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 130/287 (45%), Positives = 173/287 (60%), Gaps = 1/287 (0%) Query: 4 SLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKTLEEYFEQPLFLRQSRGVEPT 63 SLPPLKAL+VFEAA R RS T AA EL ITHSAVSQQI+ LE+Y QPLF R++RGV Sbjct: 5 SLPPLKALRVFEAAARLRSFTAAADELSITHSAVSQQIRILEDYIGQPLFAREARGVTLL 64 Query: 64 EAALAFYAEVKASLDRIALAAEQLSLAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNPRI 123 A A++ EV+ASL+RIA A +L G V+R+ A PS+ M+WLIPRLS FQ +P I Sbjct: 65 PCAQAYFPEVQASLERIAAATAKLRSPGHGGVLRVSATPSLTMKWLIPRLSAFQSLHPGI 124 Query: 124 EVRVTTTMSEYFEDVKD-PFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETHPIRV 182 +V++TT + + + DV I + + CV LDD VP+ASP F+E + + Sbjct: 125 DVQLTTQGRSFLDRGDEGGSDVFIRHGFVTHAEMSCVHCLDDFHVPVASPRFIERNRLAA 184 Query: 183 PRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGMGTL 242 P D + PL+ ++ W +W A V V ++PG V++H FL +QAA D G+ + Sbjct: 185 PADCLGYPLLKVAGGMDHWPRWFALARVDVPAQLPGPVFDHQFLCMQAAMNDLGIALAPW 244 Query: 243 ALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSSADTNPALKTFITWL 289 L+ DDL A RL LF + L G H L+R A A + FI WL Sbjct: 245 CLLQDDLRADRLRPLFLQPRLPNAGVHALFRPDAPAAAAARHFIDWL 291