BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3792.p (383 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776544.1| permease [Herbaspirillum seropedicae SmR1] >... 505 e-141 ref|YP_259387.2| permease family protein [Pseudomonas fluorescen... 439 e-121 ref|ZP_07774586.1| putative permease family [Pseudomonas fluores... 433 e-119 ref|YP_004753435.1| putative permease [Collimonas fungivorans Te... 411 e-113 ref|ZP_06193357.1| permease [Serratia odorifera 4Rx13] >gi|27004... 369 e-100 >ref|YP_003776544.1| permease [Herbaspirillum seropedicae SmR1] gb|ADJ64636.1| permease protein [Herbaspirillum seropedicae SmR1] Length = 354 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 322/349 (92%), Positives = 338/349 (96%) Query: 35 SSSASRGSSAWLKPLLFIVVAAIGLYYVKWSPYYLKSFVAADKHSIGASILANAPAAPWS 94 S + + +SAWLK LLF +VAA+GLYYVKWSPYY KSFVAADKHSIGASILANAPAAPWS Sbjct: 6 SPTPTNKTSAWLKTLLFALVAAVGLYYVKWSPYYAKSFVAADKHSIGASILANAPAAPWS 65 Query: 95 AALEYATVYFLAIWKAAVLGVLLGSLVQVLVPRDWLLRVFGRAGLGSTLRGGLFALPGMM 154 AALEYA +YFLAIWKAAVLG++LGSLVQVL+PRDWLLR+FGRAGLGSTLRGGLFALPGMM Sbjct: 66 AALEYAEIYFLAIWKAAVLGIVLGSLVQVLIPRDWLLRMFGRAGLGSTLRGGLFALPGMM 125 Query: 155 CSCCAAPVVAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWHFAALRLVAGILLV 214 CSCCAAPVVAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWHFAALRLVAGILLV Sbjct: 126 CSCCAAPVVAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWHFAALRLVAGILLV 185 Query: 215 VGVSLIAQRVAQTETLPQAAMDALAAAEYEPMDDGRHFLVRWGSKLWQLFWTTAPVYIVV 274 +GV+LIAQRVAQ+ETLPQAAMDALAAAEYEP++DGRHFLVRWGSKLWQLFWTTAPVYIV Sbjct: 186 LGVALIAQRVAQSETLPQAAMDALAAAEYEPLEDGRHFLVRWGSKLWQLFWTTAPVYIVA 245 Query: 275 VLALGAARVWLFPQVDASMGNSLLWIVALAVVGTLFVIPTAAEIPIVQSMLSLGMGVGPA 334 VLALGAARVWLFPQVD +MGNSLLWIVALAVVGTLFVIPTAAEIPIVQSMLSLGMGVGPA Sbjct: 246 VLALGAARVWLFPQVDVAMGNSLLWIVALAVVGTLFVIPTAAEIPIVQSMLSLGMGVGPA 305 Query: 335 VALLMTLPSISLPSLLMLRKSFTSRVLTTVTLLTMLIGAASGLAAVALL 383 VALLMTLPSISLPSLLMLR SFTSRVLTTVTLLTMLIGAASGLAAVALL Sbjct: 306 VALLMTLPSISLPSLLMLRHSFTSRVLTTVTLLTMLIGAASGLAAVALL 354 >ref|YP_259387.2| permease family protein [Pseudomonas fluorescens Pf-5] gb|AAY91553.2| permease family protein [Pseudomonas fluorescens Pf-5] Length = 351 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 255/349 (73%), Positives = 297/349 (85%), Gaps = 3/349 (0%) Query: 35 SSSASRGSSAWLKPLLFIVVAAIGLYYVKWSPYYLKSFVAADKHSIGASILANAPAAPWS 94 S+ +RG + W KPLLF++VAAIGLYYVKWSPYYLK+FVAAD HSIGASIL + ++PWS Sbjct: 6 STQPNRGWAFWCKPLLFLLVAAIGLYYVKWSPYYLKAFVAADSHSIGASILNDQQSSPWS 65 Query: 95 AALEYATVYFLAIWKAAVLGVLLGSLVQVLVPRDWLLRVFGRAGLGSTLRGGLFALPGMM 154 AAL Y+ VYFLAIWKAAVL V+LGSL+QVL+PRDWLLR+FGRAG STLRGGLFALPGMM Sbjct: 66 AALAYSQVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFGRAGFSSTLRGGLFALPGMM 125 Query: 155 CSCCAAPVVAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWHFAALRLVAGILLV 214 CSCCAAPV AG+RRQ+VSVGAALAFWIANPVLNPATLVFMGFVLGW F+ALRLVAGI+LV Sbjct: 126 CSCCAAPVAAGLRRQKVSVGAALAFWIANPVLNPATLVFMGFVLGWGFSALRLVAGIVLV 185 Query: 215 VGVSLIAQRVAQTETLPQAAMDALAAAEYEPMDDGRHFLVRWGSKLWQLFWTTAPVYIVV 274 +GVSL+AQR+A E LP+AA+DA+ A + + FL RWG LWQLFW+T P+Y++ Sbjct: 186 LGVSLVAQRIAGPEQLPEAAVDAVVEAS---TVNDQPFLSRWGKTLWQLFWSTIPIYVLA 242 Query: 275 VLALGAARVWLFPQVDASMGNSLLWIVALAVVGTLFVIPTAAEIPIVQSMLSLGMGVGPA 334 VL LGAARVWLFP +D +MG+SL W+V LA+ GTLFVIPTAAEIPIVQ+M++LG+G GPA Sbjct: 243 VLVLGAARVWLFPHIDGAMGDSLWWLVPLAIAGTLFVIPTAAEIPIVQTMMTLGLGTGPA 302 Query: 335 VALLMTLPSISLPSLLMLRKSFTSRVLTTVTLLTMLIGAASGLAAVALL 383 VALLMTLPSISLPSLLMLRK F +RVL TV +LTML+G GL LL Sbjct: 303 VALLMTLPSISLPSLLMLRKDFDARVLVTVAVLTMLVGIVCGLIGAVLL 351 >ref|ZP_07774586.1| putative permease family [Pseudomonas fluorescens WH6] gb|EFQ64298.1| putative permease family [Pseudomonas fluorescens WH6] Length = 351 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 255/349 (73%), Positives = 292/349 (83%), Gaps = 3/349 (0%) Query: 35 SSSASRGSSAWLKPLLFIVVAAIGLYYVKWSPYYLKSFVAADKHSIGASILANAPAAPWS 94 S +RG S W KP LF++VA +GLYYVKWSPYY K+F AAD HSIGASIL + ++P + Sbjct: 6 SIQPNRGWSFWWKPALFLLVACVGLYYVKWSPYYFKAFAAADNHSIGASILNDQQSSPLA 65 Query: 95 AALEYATVYFLAIWKAAVLGVLLGSLVQVLVPRDWLLRVFGRAGLGSTLRGGLFALPGMM 154 AAL YA VYFLAIWKAAVL V+LGSL+QVL+PRDWLLR+FGRAGLGST+RGGLFALPGMM Sbjct: 66 AALAYAQVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFGRAGLGSTVRGGLFALPGMM 125 Query: 155 CSCCAAPVVAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWHFAALRLVAGILLV 214 CSCCAAPV AGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGW F ALRLVAGI+LV Sbjct: 126 CSCCAAPVAAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWGFTALRLVAGIVLV 185 Query: 215 VGVSLIAQRVAQTETLPQAAMDALAAAEYEPMDDGRHFLVRWGSKLWQLFWTTAPVYIVV 274 VGVSL+AQR+A+ E +P+AA+DA+A + + FL RW LWQLFW+T PVYI+ Sbjct: 186 VGVSLVAQRIARPEQVPEAALDAVAEVS---TLESQPFLSRWLRTLWQLFWSTIPVYILA 242 Query: 275 VLALGAARVWLFPQVDASMGNSLLWIVALAVVGTLFVIPTAAEIPIVQSMLSLGMGVGPA 334 VL LGAARVWLFP VD +M NSL+W+V LA+VGTLFVIPTAAEIPIVQ+M++LGMG GPA Sbjct: 243 VLVLGAARVWLFPHVDGAMANSLIWLVPLAIVGTLFVIPTAAEIPIVQTMMTLGMGTGPA 302 Query: 335 VALLMTLPSISLPSLLMLRKSFTSRVLTTVTLLTMLIGAASGLAAVALL 383 VALLMTLPS+SLPSLLMLRK F +RVL TV LTML+G GL +L Sbjct: 303 VALLMTLPSVSLPSLLMLRKDFDARVLVTVAGLTMLVGVVCGLIGAVIL 351 >ref|YP_004753435.1| putative permease [Collimonas fungivorans Ter331] gb|AEK62612.1| putative permease [Collimonas fungivorans Ter331] Length = 410 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 253/345 (73%), Positives = 287/345 (83%), Gaps = 2/345 (0%) Query: 39 SRGSSAWLKPLLFIVVAAIGLYYVKWSPYYLKSFVAADKHSIGASILANAPAAPWSAALE 98 +RG S W KP LF++VA +GLYYVKWSPYYLKSF+AADKHSIGASIL + AP +AAL Sbjct: 68 ARGWSFWWKPALFVLVAVVGLYYVKWSPYYLKSFLAADKHSIGASILDDQQGAPIAAALA 127 Query: 99 YATVYFLAIWKAAVLGVLLGSLVQVLVPRDWLLRVFGRAGLGSTLRGGLFALPGMMCSCC 158 YA VYFLAIWKAAVL V+LGSL+QVL+PRDWLLR+FGRAG GS LRGGLFALPGMMCSCC Sbjct: 128 YAKVYFLAIWKAAVLAVILGSLLQVLIPRDWLLRLFGRAGFGSVLRGGLFALPGMMCSCC 187 Query: 159 AAPVVAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWHFAALRLVAGILLVVGVS 218 AAPVVAGMRRQ+VSVGAALAFWIANPVLNPATLVFMGFVLGW F ALRLVAG++LV+GVS Sbjct: 188 AAPVVAGMRRQKVSVGAALAFWIANPVLNPATLVFMGFVLGWGFTALRLVAGLVLVLGVS 247 Query: 219 LIAQRVAQTETLPQAAMDALAAAEYEPMDDGRHFLVRWGSKLWQLFWTTAPVYIVVVLAL 278 +IAQR+++ E +P AA A P FL RW +WQLFW+T PVY++ VL L Sbjct: 248 MIAQRISRPEEIPAAAAAEAVVAASAPART--DFLGRWARTIWQLFWSTIPVYVLAVLVL 305 Query: 279 GAARVWLFPQVDASMGNSLLWIVALAVVGTLFVIPTAAEIPIVQSMLSLGMGVGPAVALL 338 GAARVWLFP VD +MGNSLLW+V LA+ GTLFVIPTAAEIPIVQ+M++LG+G PAVALL Sbjct: 306 GAARVWLFPHVDGAMGNSLLWLVPLAIAGTLFVIPTAAEIPIVQTMMALGLGTAPAVALL 365 Query: 339 MTLPSISLPSLLMLRKSFTSRVLTTVTLLTMLIGAASGLAAVALL 383 MTLPSISLPSLLMLRK F +RVL V +LTML+G SGL ALL Sbjct: 366 MTLPSISLPSLLMLRKDFDARVLVAVAVLTMLVGVVSGLVGAALL 410 >ref|ZP_06193357.1| permease [Serratia odorifera 4Rx13] gb|EFA14129.1| permease [Serratia odorifera 4Rx13] Length = 352 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 222/353 (62%), Positives = 267/353 (75%), Gaps = 4/353 (1%) Query: 31 PMTFSSSASRGSSAWLKPLLFIVVAAIGLYYVKWSPYYLKSFVAADKHSIGASILANAPA 90 P+T + +R W KP+LF++V AIGLYYVKW PYY K+F+AAD HSIG SILANA + Sbjct: 4 PLTAPENTARAWPLW-KPILFLLVVAIGLYYVKWQPYYGKAFLAADTHSIGKSILANADS 62 Query: 91 APWSAALEYATVYFLAIWKAAVLGVLLGSLVQVLVPRDWLLRVFGRAGLGSTLRGGLFAL 150 +PW AA YA VYF A+WKAAVLGVLLGSLVQVL+PRDWLLR G TL G AL Sbjct: 63 SPWQAAWHYALVYFTAVWKAAVLGVLLGSLVQVLIPRDWLLRTLGHPRFSGTLLGAAIAL 122 Query: 151 PGMMCSCCAAPVVAGMRRQQVSVGAALAFWIANPVLNPATLVFMGFVLGWHFAALRLVAG 210 PGMMC+CCAAPV AG+RRQ VS GAA+AFW++NPVLNPATL+FMGFVLGW FAA+RLVAG Sbjct: 123 PGMMCTCCAAPVAAGLRRQSVSSGAAMAFWLSNPVLNPATLIFMGFVLGWPFAAIRLVAG 182 Query: 211 ILLVVGVSLIAQRVAQTETLPQAAMDALAAAEYEPMDDGRHFLVRWGSKLWQLFWTTAPV 270 +++V+GV+ + QRV + P AA+ A + + R FL RW LW LFW T PV Sbjct: 183 VIMVLGVAWLVQRVTARDPQP-AALQPPAVPRVKTEE--RPFLGRWLKALWTLFWATIPV 239 Query: 271 YIVVVLALGAARVWLFPQVDASMGNSLLWIVALAVVGTLFVIPTAAEIPIVQSMLSLGMG 330 YIV VLALGAARVWLFP D ++ NSLLWI+ALA+ G LFVIPTAAEIPIVQ+M+ GMG Sbjct: 240 YIVAVLALGAARVWLFPHADGAIDNSLLWIIALAIAGCLFVIPTAAEIPIVQTMMLAGMG 299 Query: 331 VGPAVALLMTLPSISLPSLLMLRKSFTSRVLTTVTLLTMLIGAASGLAAVALL 383 GPA+ALLMTLP++SLPSLLML K F+++ L LL +L G A+GL + L+ Sbjct: 300 TGPALALLMTLPAVSLPSLLMLNKVFSAKALCLTALLVVLCGIATGLVGMGLV 352