BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3790.p (524 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776542.1| D-galactarate dehydratase [Herbaspirillum se... 1017 0.0 ref|YP_004750898.1| D-galactarate dehydratase [Collimonas fungiv... 847 0.0 ref|YP_297892.1| galactarate dehydratase [Ralstonia eutropha JMP... 822 0.0 ref|YP_586865.1| galactarate dehydratase [Cupriavidus metallidur... 821 0.0 ref|YP_002007455.1| (d)-galactarate dehydrogenase [Cupriavidus t... 812 0.0 >ref|YP_003776542.1| D-galactarate dehydratase [Herbaspirillum seropedicae SmR1] gb|ADJ64634.1| D-galactarate dehydratase protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 1017 bits (2630), Expect = 0.0, Method: Composition-based stats. Identities = 505/520 (97%), Positives = 510/520 (98%) Query: 5 TATQASNTNIPRYIMMNDTDNVAIVVNDGGLPAGTVFPDGLTLVDRVPQGHKIALRDLKQ 64 T T AS + PRYIMMNDTDNVAIVVNDGGLPAGTVFPDGLTLVDRVPQGHKIALRDLKQ Sbjct: 3 TDTSASQASAPRYIMMNDTDNVAIVVNDGGLPAGTVFPDGLTLVDRVPQGHKIALRDLKQ 62 Query: 65 GEAIVRYDVAIGYAVRDIPKGSWIEESLVQMPPARGLDNLPIATKKPAPQPPLDGYTFEG 124 GEAIVRYDVAIGYAVRDIPKG WIEESLVQMPPAR LDNLPIATKKPAPQPPL+GYTFEG Sbjct: 63 GEAIVRYDVAIGYAVRDIPKGGWIEESLVQMPPARELDNLPIATKKPAPQPPLEGYTFEG 122 Query: 125 YRNADGSVGTRNLLAITTTVQCVAGVVEHAVKRIRAELLPKYPNVEDVVALEHTYGCGVA 184 YRNADGSVGTRNLLAITTTVQCVAGVVEHAVKRIRAELLPKYPNVEDVVALEHTYGCGVA Sbjct: 123 YRNADGSVGTRNLLAITTTVQCVAGVVEHAVKRIRAELLPKYPNVEDVVALEHTYGCGVA 182 Query: 185 IDAPNAGIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIPIHKAGEPYVVCL 244 IDAPNAGIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIPIHK GEPYVVCL Sbjct: 183 IDAPNAGIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIPIHKQGEPYVVCL 242 Query: 245 QDAEHVGFNSMIDSIMKMAEARLTELDKRRRETCPASDLVVGVQCGGSDAFSGVTANPAV 304 QDAEHVGFNSMIDSIM MAEARLTEL+KRRRETCPASDLVVGVQCGGSDAFSGVTANPAV Sbjct: 243 QDAEHVGFNSMIDSIMNMAEARLTELNKRRRETCPASDLVVGVQCGGSDAFSGVTANPAV 302 Query: 305 GFATDLLVRAGASVMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYDNYLKQGGVDR 364 GFATDLLVRAGASVMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYDNYLKQGGVDR Sbjct: 303 GFATDLLVRAGASVMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYDNYLKQGGVDR 362 Query: 365 SANTTPGNKKGGLANIVEKAMGSIVKSGSSPISGVLAPGDKLQQKGLIYAATPASDFICG 424 SANTTPGNKKGGLANIVEKAMGSIVKSGSSPISGVL+PGDKLQQKGLIYAATPASDFICG Sbjct: 363 SANTTPGNKKGGLANIVEKAMGSIVKSGSSPISGVLSPGDKLQQKGLIYAATPASDFICG 422 Query: 425 TLQLAAGMNLHIFTTGRGTPYGLAAVPVIKVATRNDLARRWHDLMDVNAGRIASGEATIE 484 TLQLAAGMNLHIFTTGRGTPYGLAAVPVIKVATRNDLARRWHDLMDVNAGRIASGEA+IE Sbjct: 423 TLQLAAGMNLHIFTTGRGTPYGLAAVPVIKVATRNDLARRWHDLMDVNAGRIASGEASIE 482 Query: 485 QVGWELFQLMLDVASGKKRTWAEQWKLHNALTLFNPAPVT 524 VGWELFQLMLDVASGKKRTWAEQWKLHNALTLFNPAPVT Sbjct: 483 DVGWELFQLMLDVASGKKRTWAEQWKLHNALTLFNPAPVT 522 >ref|YP_004750898.1| D-galactarate dehydratase [Collimonas fungivorans Ter331] gb|AEK60075.1| D-galactarate dehydratase [Collimonas fungivorans Ter331] Length = 524 Score = 847 bits (2187), Expect = 0.0, Method: Composition-based stats. Identities = 421/520 (80%), Positives = 463/520 (89%), Gaps = 4/520 (0%) Query: 9 ASNTNIPRYIMMNDTDNVAIVVNDGGLPAGTVFPDGLTLVDRVPQGHKIALRDLKQGEAI 68 A+++N P YI M + DNVAIV NDGGLPAG+VFP GL L D+VPQGHK+AL ++ +GEAI Sbjct: 5 ATDSNAPLYIRMQEQDNVAIVANDGGLPAGSVFPCGLVLRDKVPQGHKVALGEIAEGEAI 64 Query: 69 VRYDVAIGYAVRDIPKGSWIEESLVQMPPARGLDNLPIATKKPAPQPPLDGYTFEGYRNA 128 VRY V IGYA R I +GSWI+ESLV+MPPAR L NLPIAT+ PA PL+GYTFEGYRNA Sbjct: 65 VRYGVVIGYAQRPIAQGSWIDESLVRMPPARELSNLPIATRTPAVAAPLEGYTFEGYRNA 124 Query: 129 DGSVGTRNLLAITTTVQCVAGVVEHAVKRIRAELLPKYPNVEDVVALEHTYGCGVAIDAP 188 DGSVGTRN+LAI+TTVQCV+GVVEHAVKRI+AELLP YP+V+DV+ LEHTYGCGVAIDAP Sbjct: 125 DGSVGTRNILAISTTVQCVSGVVEHAVKRIKAELLPAYPHVDDVIGLEHTYGCGVAIDAP 184 Query: 189 NAGIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIPIHKAGEP----YVVCL 244 A IPIRTLRNIS+NPNFGGQAMVVSLGCEKLQP RL P+ IPI G VVCL Sbjct: 185 GAEIPIRTLRNISMNPNFGGQAMVVSLGCEKLQPGRLFPQGSIPIQSTGGREDGLRVVCL 244 Query: 245 QDAEHVGFNSMIDSIMKMAEARLTELDKRRRETCPASDLVVGVQCGGSDAFSGVTANPAV 304 QDAEHVGF SMI SIM A+ +L ELDKRRR TCPAS+LVVGVQCGGSDAFSGVTANPAV Sbjct: 245 QDAEHVGFESMIVSIMATAKEQLAELDKRRRVTCPASELVVGVQCGGSDAFSGVTANPAV 304 Query: 305 GFATDLLVRAGASVMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYDNYLKQGGVDR 364 GFA+DLLVRAGA+VMFSE TEVRDGIDQLT+RA + EVAQAMIREM WYD+YL +GGVDR Sbjct: 305 GFASDLLVRAGAAVMFSETTEVRDGIDQLTARAASAEVAQAMIREMAWYDDYLTRGGVDR 364 Query: 365 SANTTPGNKKGGLANIVEKAMGSIVKSGSSPISGVLAPGDKLQQKGLIYAATPASDFICG 424 SANTTPGNKKGGLANIVEKAMGSIVKSGSS ISGVL+PGDKL+QKGLIYAATPASDF+CG Sbjct: 365 SANTTPGNKKGGLANIVEKAMGSIVKSGSSVISGVLSPGDKLRQKGLIYAATPASDFVCG 424 Query: 425 TLQLAAGMNLHIFTTGRGTPYGLAAVPVIKVATRNDLARRWHDLMDVNAGRIASGEATIE 484 TLQLAAGMNLH+FTTGRGTPYGLAAVPVIKVATRNDLARRWHDLMD+NAGRIASGEA+IE Sbjct: 425 TLQLAAGMNLHVFTTGRGTPYGLAAVPVIKVATRNDLARRWHDLMDINAGRIASGEASIE 484 Query: 485 QVGWELFQLMLDVASGKKRTWAEQWKLHNALTLFNPAPVT 524 VGWELF LMLDVASG+K+TWAE KLHNALTLFNPAP+T Sbjct: 485 DVGWELFHLMLDVASGRKQTWAEHHKLHNALTLFNPAPIT 524 >ref|YP_297892.1| galactarate dehydratase [Ralstonia eutropha JMP134] gb|AAZ63048.1| galactarate dehydratase [Ralstonia eutropha JMP134] Length = 524 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 406/513 (79%), Positives = 454/513 (88%), Gaps = 3/513 (0%) Query: 15 PRYIMMNDTDNVAIVVNDGGLPAGTVFPDGLTLVDRVPQGHKIALRDLKQGEAIVRYDVA 74 P YI ++ DNVAIV NDGGLPAG FP GL L + VPQGHK+AL DLKQG+A+VRY+V Sbjct: 12 PLYIRIHPEDNVAIVANDGGLPAGAAFPCGLVLQEAVPQGHKVALSDLKQGDAVVRYNVV 71 Query: 75 IGYAVRDIPKGSWIEESLVQMPPARGLDNLPIATKKPAPQPPLDGYTFEGYRNADGSVGT 134 IGYA++D+P+GSW+ E +++MP A GL +LPI T+ PAP PPL+GYTFEG+RN DGSVGT Sbjct: 72 IGYALKDLPRGSWVNERVIEMPVAPGLTDLPIGTRVPAPLPPLEGYTFEGFRNPDGSVGT 131 Query: 135 RNLLAITTTVQCVAGVVEHAVKRIRAELLPKYPNVEDVVALEHTYGCGVAIDAPNAGIPI 194 RN+LAITTTVQCV+GVVEHAV+RIR ELLP+YPNV+DVV LEHTYGCGVAIDAP+A IPI Sbjct: 132 RNILAITTTVQCVSGVVEHAVRRIREELLPRYPNVDDVVGLEHTYGCGVAIDAPDAVIPI 191 Query: 195 RTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIPIHK-AGEPYV--VCLQDAEHVG 251 RTLRNI+LNPNFGG AM+VSLGCEKLQP+RL+P IPI AGE V VCLQD +HVG Sbjct: 192 RTLRNIALNPNFGGTAMMVSLGCEKLQPDRLMPAGTIPIQTGAGEVQVGVVCLQDEQHVG 251 Query: 252 FNSMIDSIMKMAEARLTELDKRRRETCPASDLVVGVQCGGSDAFSGVTANPAVGFATDLL 311 F SMI SIM MAE L L+ RRRETCP SDLVVGVQCGGSDAFSGVTANPAVGFATDLL Sbjct: 252 FASMIASIMTMAETHLERLNARRRETCPVSDLVVGVQCGGSDAFSGVTANPAVGFATDLL 311 Query: 312 VRAGASVMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYDNYLKQGGVDRSANTTPG 371 VRAGA+VMFSEVTEVRDGIDQLT+RA EVA AMIREM WYD YL++G VDRSANTTPG Sbjct: 312 VRAGAAVMFSEVTEVRDGIDQLTARAATPEVADAMIREMAWYDRYLERGRVDRSANTTPG 371 Query: 372 NKKGGLANIVEKAMGSIVKSGSSPISGVLAPGDKLQQKGLIYAATPASDFICGTLQLAAG 431 NKKGGL+NIVEKAMGSI+KSG +PISGVL+PG+KL+QKGLIYAATPASDFICGTLQLAAG Sbjct: 372 NKKGGLSNIVEKAMGSIIKSGRAPISGVLSPGEKLKQKGLIYAATPASDFICGTLQLAAG 431 Query: 432 MNLHIFTTGRGTPYGLAAVPVIKVATRNDLARRWHDLMDVNAGRIASGEATIEQVGWELF 491 MNLH+FTTGRGTPYGLA VPVIKVATR+DLARRWHDLMDVNAGRIA+GEATIE VGWELF Sbjct: 432 MNLHVFTTGRGTPYGLAEVPVIKVATRSDLARRWHDLMDVNAGRIATGEATIEDVGWELF 491 Query: 492 QLMLDVASGKKRTWAEQWKLHNALTLFNPAPVT 524 +LM+DVASG+K+TWAE KLHNAL LFNPAPVT Sbjct: 492 RLMIDVASGRKKTWAEHHKLHNALALFNPAPVT 524 >ref|YP_586865.1| galactarate dehydratase [Cupriavidus metallidurans CH34] gb|ABF11596.1| galactarate dehydratase [Cupriavidus metallidurans CH34] Length = 530 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 405/527 (76%), Positives = 461/527 (87%), Gaps = 3/527 (0%) Query: 1 MSAETATQASNTNIPRYIMMNDTDNVAIVVNDGGLPAGTVFPDGLTLVDRVPQGHKIALR 60 +S + A + P YI ++ DNVAIV NDGGLPAG+VFP GLTLV+RVPQGHK+AL Sbjct: 4 LSVQNAQGQAAERAPLYIRIHANDNVAIVANDGGLPAGSVFPCGLTLVERVPQGHKVALV 63 Query: 61 DLKQGEAIVRYDVAIGYAVRDIPKGSWIEESLVQMPPARGLDNLPIATKKPAPQPPLDGY 120 DLK+G+A+ RY+V IGYA++D+P+G+W+ E +++MP A GL +LPI T+ P P PPL+GY Sbjct: 64 DLKKGDAVTRYNVTIGYALQDLPRGAWVNERVIEMPTAPGLTDLPIGTRVPEPLPPLEGY 123 Query: 121 TFEGYRNADGSVGTRNLLAITTTVQCVAGVVEHAVKRIRAELLPKYPNVEDVVALEHTYG 180 TFEG+RN DGSVGTRN+LAITTTVQCV+GVVEHAV RI+ ELLP+YPNV+DV+ LEHTYG Sbjct: 124 TFEGFRNPDGSVGTRNILAITTTVQCVSGVVEHAVHRIKTELLPRYPNVDDVIGLEHTYG 183 Query: 181 CGVAIDAPNAGIPIRTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIPIHK-AGEP 239 CGVAIDAP+A +PIRTLRNI+LNPNFGG AM+VSLGCEKLQP RL+P IPI AGE Sbjct: 184 CGVAIDAPDAIVPIRTLRNIALNPNFGGTAMMVSLGCEKLQPERLMPPGTIPIQTGAGEV 243 Query: 240 YV--VCLQDAEHVGFNSMIDSIMKMAEARLTELDKRRRETCPASDLVVGVQCGGSDAFSG 297 V VCLQD +HVGF SMIDSIM MAE L L+ R+RET P S+LVVGVQCGGSDAFSG Sbjct: 244 QVGVVCLQDDKHVGFASMIDSIMAMAETHLQTLNARKRETVPVSELVVGVQCGGSDAFSG 303 Query: 298 VTANPAVGFATDLLVRAGASVMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYDNYL 357 VTANPAVGFATDLLVRAGA+VMFSEVTEVRDGIDQLT+RA EVA+AMIREMDWYD YL Sbjct: 304 VTANPAVGFATDLLVRAGATVMFSEVTEVRDGIDQLTARAATPEVAEAMIREMDWYDRYL 363 Query: 358 KQGGVDRSANTTPGNKKGGLANIVEKAMGSIVKSGSSPISGVLAPGDKLQQKGLIYAATP 417 +G VDRSANTTPGNKKGGL+NIVEKAMGSIVKSGS+PISGV++PG+K++QKGLIYAATP Sbjct: 364 DRGRVDRSANTTPGNKKGGLSNIVEKAMGSIVKSGSAPISGVVSPGEKVKQKGLIYAATP 423 Query: 418 ASDFICGTLQLAAGMNLHIFTTGRGTPYGLAAVPVIKVATRNDLARRWHDLMDVNAGRIA 477 ASDFICGTLQLAAGMNLHIFTTGRGTPYGLA VPVIKVATR+DLARRWHDLMDVNAGRIA Sbjct: 424 ASDFICGTLQLAAGMNLHIFTTGRGTPYGLAEVPVIKVATRSDLARRWHDLMDVNAGRIA 483 Query: 478 SGEATIEQVGWELFQLMLDVASGKKRTWAEQWKLHNALTLFNPAPVT 524 +GEATIE VGWELF LM+DVASG+K+TWAE KLHNAL LFNPAPVT Sbjct: 484 TGEATIEDVGWELFHLMIDVASGRKQTWAEHHKLHNALALFNPAPVT 530 >ref|YP_002007455.1| (d)-galactarate dehydrogenase [Cupriavidus taiwanensis LMG 19424] emb|CAQ71398.1| (D)-galactarate dehydrogenase [Cupriavidus taiwanensis LMG 19424] Length = 521 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 395/510 (77%), Positives = 449/510 (88%), Gaps = 2/510 (0%) Query: 15 PRYIMMNDTDNVAIVVNDGGLPAGTVFPDGLTLVDRVPQGHKIALRDLKQGEAIVRYDVA 74 P YI M+ DNVAIV NDGGLPAGT FP GL L + +PQGHK+AL DL++G+A++RY+V Sbjct: 14 PLYIAMHAADNVAIVANDGGLPAGTAFPCGLVLKEAIPQGHKVALADLREGDAVIRYNVV 73 Query: 75 IGYAVRDIPKGSWIEESLVQMPPARGLDNLPIATKKPAPQPPLDGYTFEGYRNADGSVGT 134 IGYA+RD+P+GSWI E +++MP A GL+NLP++T+ AP PPL+GYTFEGYRNADGSVGT Sbjct: 74 IGYALRDLPRGSWINERVIRMPEAPGLENLPVSTRV-APLPPLEGYTFEGYRNADGSVGT 132 Query: 135 RNLLAITTTVQCVAGVVEHAVKRIRAELLPKYPNVEDVVALEHTYGCGVAIDAPNAGIPI 194 RN+L ITTTVQCV GVVE AV+RI+ ELLPKYPNV+DVV LEHTYGCGVAIDAP+AGIPI Sbjct: 133 RNILGITTTVQCVEGVVEFAVRRIKEELLPKYPNVDDVVGLEHTYGCGVAIDAPDAGIPI 192 Query: 195 RTLRNISLNPNFGGQAMVVSLGCEKLQPNRLLPENMIPIHKAGEPYVVCLQDAEHVGFNS 254 RT+RNI+LNPNFGG+ M+VSLGCEKLQP RL+ IPI KAGEP VVCLQD +HVGF + Sbjct: 193 RTIRNIALNPNFGGEVMIVSLGCEKLQPARLIGAGTIPIQKAGEPDVVCLQDEQHVGFAA 252 Query: 255 MIDSIMKMAEARLTELDKRRRETCPASDLVVGVQCGGSDAFSGVTANPAVGFATDLLVRA 314 MIDSIM AE L L+ RRRETCPASDLVVGVQCGGSDAFSGVTANPAVGFATDLLVRA Sbjct: 253 MIDSIMVTAEKHLARLNARRRETCPASDLVVGVQCGGSDAFSGVTANPAVGFATDLLVRA 312 Query: 315 GASVMFSEVTEVRDGIDQLTSRAVNEEVAQAMIREMDWYDNYLKQGGVDRSANTTPGNKK 374 GA+VMFSEVTEVRDGIDQLT+RA EVA+A++R+M WYD YL+QG VDRSANTTPGNKK Sbjct: 313 GATVMFSEVTEVRDGIDQLTARAATPEVAEALVRQMAWYDRYLEQGQVDRSANTTPGNKK 372 Query: 375 GGLANIVEKAMGSIVKSGSSPISGVLAPGDKLQQKGLIYAATPASDFICGTLQLAAGMNL 434 GGL+NIVEKAMGSIVKSG+ PI GV PG+K+ QKGLIYAATPA DF+CGTLQLAAGMNL Sbjct: 373 GGLSNIVEKAMGSIVKSGTGPIHGVSGPGEKVTQKGLIYAATPAGDFVCGTLQLAAGMNL 432 Query: 435 HIFTTGRGTPYGLAAVPVIKVATRNDLARRWHDLMDVNAGRIASGEATIEQVGWELFQLM 494 H+FTTGRGTPYGLA VPV+KV+TRNDLARRWHDLMDVNAGRIA+GEATIE+VGWELF + Sbjct: 433 HVFTTGRGTPYGLAEVPVVKVSTRNDLARRWHDLMDVNAGRIATGEATIEEVGWELFHTL 492 Query: 495 LDVASGKKRTWAEQWKLHNALTLFNPAPVT 524 L VASGKK +WAE WK+ NAL LFNPAPVT Sbjct: 493 LAVASGKK-SWAEHWKIRNALVLFNPAPVT 521