BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3787.p (616 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776540.1| methyl-accepting chemotaxis transducer trans... 719 0.0 ref|ZP_04948532.1| Methyl-accepting chemotaxis protein [Burkhold... 432 e-119 ref|ZP_00945261.1| Probable transmembrane methyl-accepting chemo... 395 e-107 ref|YP_003746076.1| methyl-accepting chemotaxis transducer trans... 392 e-106 emb|CAQ18657.1| methyl-accepting chemotaxis transducer protein [... 390 e-106 >ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64632.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 475/596 (79%), Positives = 517/596 (86%), Gaps = 7/596 (1%) Query: 28 MRNLTVRFSLMSALALFSCMIVVGAAVGIFALGRANQATEYVHEIAEHVIVINDAYKDTT 87 MRNLTVRFSLMSALALFSCMIVVGA VGIFALGRAN ATEYVHEI E ++INDAYKDTT Sbjct: 1 MRNLTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERALLINDAYKDTT 60 Query: 88 RTRSALTRAYANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAVKKEL 147 RTR+A R YA EK D AV ++ALKSA+ +YER LK++DE++KLPDL G++PA K EL Sbjct: 61 RTRAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPATKTEL 120 Query: 148 IESARALSDLLAKASSQLKAGDTGAYSDLNDKQINPAGGRFSKALDAFQKRAMELNDNAA 207 +ESA+AL+++L KA+ LKAGD YS LN+ I+ G RFS ALDA+QKRAMELNDN Sbjct: 121 LESAKALNEVLKKATDLLKAGDAAGYSQLNNNFISKGGARFSTALDAYQKRAMELNDNVT 180 Query: 208 SERTREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVD 267 ++R REYN+VVW+V+ GLIGAMFLV+GVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKV+ Sbjct: 181 TQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVE 240 Query: 268 VHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRTEQQASSL 327 V S+NEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDT+AKEIAAGNMDLSSRTEQQASSL Sbjct: 241 VASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTEQQASSL 300 Query: 328 EETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAINESSRKIV 387 EETAASME+LTGTVKQNA+NALQANQLAHSASSTASKGGEVVSQVVDTMQAIN+SSRKIV Sbjct: 301 EETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAINDSSRKIV 360 Query: 388 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 447 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 420 Query: 448 ASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 507 SVEKVEAGSQLVEQAGATM EVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE Sbjct: 421 DSVEKVEAGSQLVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 480 Query: 508 VTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDAHQVA---SPAAKPRPATMAPP-- 562 VTQQNAALVE+AAAAAQSLQAQATNLVGAVSIFKI+AHQVA PA+KPR A A P Sbjct: 481 VTQQNAALVEEAAAAAQSLQAQATNLVGAVSIFKIEAHQVAPAGKPASKPRAAPAARPVT 540 Query: 563 --PAPAAPAAPALKTAPAAAAAPKAAPKLPPAKPAKASPPAPGSRIKDDAQDWEEF 616 A A AP++ A+ + P P KA+ SR KDDAQDWEEF Sbjct: 541 TPQVAAPAAPAVTAAAPSSPASAPKSAPKLPPAPPKAAAKPASSRAKDDAQDWEEF 596 >ref|ZP_04948532.1| Methyl-accepting chemotaxis protein [Burkholderia dolosa AUO158] gb|EAY71703.1| Methyl-accepting chemotaxis protein [Burkholderia dolosa AUO158] Length = 519 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 278/515 (53%), Positives = 381/515 (73%) Query: 28 MRNLTVRFSLMSALALFSCMIVVGAAVGIFALGRANQATEYVHEIAEHVIVINDAYKDTT 87 MR+L V+ SL++ LA F+ MIV+G AVGI ALG AN + +HEIA +++NDAYKD+T Sbjct: 1 MRDLKVKNSLLAVLATFATMIVIGGAVGIVALGNANTNAKRLHEIAAQTLIVNDAYKDST 60 Query: 88 RTRSALTRAYANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAVKKEL 147 RTRSAL RAYA KE NDPA ++AL+SAQ +++ K F +P + G + +K+ L Sbjct: 61 RTRSALVRAYAALKEHNDPAQRDSALQSAQRTFDLSAKETQAFQSMPTIDGVDADLKRAL 120 Query: 148 IESARALSDLLAKASSQLKAGDTGAYSDLNDKQINPAGGRFSKALDAFQKRAMELNDNAA 207 ++S+ L+ +LA+A+ L++GDT AY+ +NDK+I AG +S ++ FQ+ A +L+++ Sbjct: 121 VDSSTQLATILARAADALRSGDTAAYATINDKEITIAGQVYSANVEKFQRVANKLSEDTI 180 Query: 208 SERTREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVD 267 ++ Y ++ MV G+ A+ L++ HF LR IV PL A LLD +A+ DLT V Sbjct: 181 ADDNAAYTRIIAMVGIGVALALALIVATHFALRRIVSQPLANAAALLDRIASNDLTVNVP 240 Query: 268 VHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRTEQQASSL 327 NEIG+LF+A++ M+ L TV+ +R SSD+I T A+EIAAGN+DLSSRTE+Q++SL Sbjct: 241 DAGRNEIGQLFAAMKRMRAGLAATVAGMRDSSDAIHTAAREIAAGNLDLSSRTEEQSASL 300 Query: 328 EETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAINESSRKIV 387 EETAASMEQLT TV+QNADNA QA+ LA SA+ A +GGE+V + VD M IN SS+KI Sbjct: 301 EETAASMEQLTSTVRQNADNAQQASTLAASAADLAQQGGELVGRAVDMMGVINASSQKIA 360 Query: 388 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 447 +I ++IDGIAFQTNILALNAAVE+ARAGE GRGFAVVA EVR+LAQRSA+AA+EI+ LI Sbjct: 361 EITAMIDGIAFQTNILALNAAVESARAGEHGRGFAVVAGEVRTLAQRSASAAREIRQLIG 420 Query: 448 ASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 507 AS++ V G++LV QAG M E+V+SV+RV I+ EI A+ EQS GI+QV +A+TQMD Sbjct: 421 ASIDDVRNGNELVSQAGRAMDEIVSSVRRVATIMTEITTATVEQSAGIDQVGQAVTQMDR 480 Query: 508 VTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKI 542 +TQQNAALVEQA+AAA +L+ QA+++ A+S+F+I Sbjct: 481 MTQQNAALVEQASAAATALENQASSMQAAMSVFRI 515 >ref|ZP_00945261.1| Probable transmembrane methyl-accepting chemotaxis protein [Ralstonia solanacearum UW551] ref|YP_002259895.1| methyl-accepting chemotaxis transducer protein [Ralstonia solanacearum IPO1609] gb|EAP72228.1| Probable transmembrane methyl-accepting chemotaxis protein [Ralstonia solanacearum UW551] emb|CAQ61828.1| methyl-accepting chemotaxis transducer protein [Ralstonia solanacearum IPO1609] Length = 597 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 297/596 (49%), Positives = 396/596 (66%), Gaps = 10/596 (1%) Query: 28 MRNLTVRFSLMSALALFSCMIVVGAAVGIFALGRANQATEYVHEIAEHVIVINDAYKDTT 87 ++N +VR L++ L F+ MIVVGAAVG+ AL AN +TE VH IA ++NDAYKD Sbjct: 5 LKNTSVRTGLLAILVTFALMIVVGAAVGVLALRTANVSTERVHTIATRSTLLNDAYKDMM 64 Query: 88 RTRSALTRAYANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAVKKEL 147 R R+ L R Y +E + AL SA+ ++ L +D F P + G + A+++ + Sbjct: 65 RARTGLARVYGMLRENPGAPLPPNALDSAETGMKKSLAQLDTFKSAPAIEGVDEALRQAI 124 Query: 148 IESARALSDLLAKASSQLKAGDTGAYSDLNDKQINPAGGRFSKALDAFQKRAMELNDNAA 207 ++A+A +D + +A + L+A D AY+ +N K + G +S ++ FQK + +L + A Sbjct: 125 GQAAQAHADAVRRAMAALRASDAAAYAVINTKDVTATGAAWSVEIERFQKLSSQLVQDEA 184 Query: 208 SERTREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVD 267 Y ++V V G++ A+ L+ VH+ L V+TPLN AV +L VA GDL+ +V Sbjct: 185 DGGRGRYGLIVKFVSVGIVMALALIAAVHYALSVFVVTPLNDAVGVLTRVAEGDLSVQVK 244 Query: 268 VHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRTEQQASSL 327 NE+GRL SA+ M+ +LL TV +VRSSSD+++T A+EIA+GN+DLSSRTEQQ++SL Sbjct: 245 EGGRNELGRLLSAVARMRASLLQTVRQVRSSSDAVNTGAQEIASGNLDLSSRTEQQSASL 304 Query: 328 EETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAINESSRKIV 387 E+TAASMEQ+T TV N++NA QA+ LA SA+ AS+GGEVV VV TM I+ SSRK+ Sbjct: 305 EKTAASMEQMTSTVTNNSENARQASALAASAADLASRGGEVVRGVVSTMDEISASSRKMA 364 Query: 388 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 447 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAAAAKEIK LID Sbjct: 365 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQRSAAAAKEIKGLID 424 Query: 448 ASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 507 ASV++V+AG+ LV QAG+TM E V +V+RV +IV +IA AS EQ+ GI Q+++A+++M++ Sbjct: 425 ASVDRVQAGNTLVAQAGSTMTETVDAVRRVANIVEDIASASAEQTQGIVQISQAVSEMEQ 484 Query: 508 VTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDAHQVASPAAKPRPATMAP----PP 563 VTQQNAALVEQAAAAAQSL+ Q+ NL V+ F++D A P+P AP P Sbjct: 485 VTQQNAALVEQAAAAAQSLEEQSKNLTQVVAQFRLDGTDGAVAVVAPKPVQAAPVTAAKP 544 Query: 564 APAAPAAPALKTAPA---AAAAPKAAPKLPPAKPAKASPPAPGSRIKDDAQDWEEF 616 A P K P A AP A P A P KA P A + DWE F Sbjct: 545 AGKPPRPVVRKREPKLKPKAVAPVAPATTPAAVPLKAQPLAAAA---GSDGDWETF 597 >ref|YP_003746076.1| methyl-accepting chemotaxis transducer transmembrane protein [Ralstonia solanacearum CFBP2957] emb|CBJ43469.1| methyl-accepting chemotaxis transducer transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 601 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 286/564 (50%), Positives = 385/564 (68%), Gaps = 4/564 (0%) Query: 28 MRNLTVRFSLMSALALFSCMIVVGAAVGIFALGRANQATEYVHEIAEHVIVINDAYKDTT 87 ++N +VR L++ L F+ MIVVGAAVG+ AL AN +TE VH IA ++NDAYKD Sbjct: 5 LKNTSVRTGLLAILVTFALMIVVGAAVGVLALRTANVSTERVHTIATRSTLLNDAYKDMM 64 Query: 88 RTRSALTRAYANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAVKKEL 147 R R+ L R Y +E + AL SA+ ++ L +D F P + G + A+++ + Sbjct: 65 RARTGLARVYGMLRENPGVPLPSNALDSAETGIKKSLAQLDTFKNAPAIEGVDEALRQSI 124 Query: 148 IESARALSDLLAKASSQLKAGDTGAYSDLNDKQINPAGGRFSKALDAFQKRAMELNDNAA 207 ++A+A +D + +A + L+A D AY+ +N K + +G +S ++ FQK + +L + A Sbjct: 125 GQAAQAHADAVQRAMAALRASDAAAYAVINAKDVTASGAAWSVEIERFQKLSSQLVQDEA 184 Query: 208 SERTREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVD 267 Y ++V V G++ A+ L+ VH+ L V+TPLN AV +L VA GDL+ +V Sbjct: 185 DGGRGRYGLIVKFVSVGIVMALALIAAVHYALSAFVVTPLNDAVGVLTRVAEGDLSVQVK 244 Query: 268 VHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRTEQQASSL 327 NE+GRL SA+ M+ +LL TV +VRSSSD+++T A+EIA+GN+DLSSRTEQQ++SL Sbjct: 245 EGGRNELGRLLSAVARMRASLLQTVRQVRSSSDAVNTGAQEIASGNLDLSSRTEQQSASL 304 Query: 328 EETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAINESSRKIV 387 E+TAASMEQ+T TV N++NA QA+ LA SA+ AS+GGEVV VV TM I+ SSRK+ Sbjct: 305 EKTAASMEQMTSTVTNNSENARQASALAASAADLASRGGEVVRGVVSTMDEISASSRKMA 364 Query: 388 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 447 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAAAAKEIK LID Sbjct: 365 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQRSAAAAKEIKGLID 424 Query: 448 ASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 507 ASV++V+AG+ LV QAG+TM E V +V+RV +IV +IA AS EQ+ GI Q+++A+++M++ Sbjct: 425 ASVDRVQAGNTLVAQAGSTMTETVDAVRRVANIVEDIASASAEQTQGIVQISQAVSEMEQ 484 Query: 508 VTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDAHQVASPAAKPRPATMAPPPAPAA 567 VTQQNAALVEQAAAAAQSL+ Q+ NL V+ F++D A P+P M P AA Sbjct: 485 VTQQNAALVEQAAAAAQSLEEQSKNLTQVVAQFRLDGADGAVAVVAPKPKPMRATPVTAA 544 Query: 568 PAAPALKTAPAAAAAPKAAPKLPP 591 A P K PKL P Sbjct: 545 KPA----GKPPRPVVRKREPKLKP 564 >emb|CAQ18657.1| methyl-accepting chemotaxis transducer protein [Ralstonia solanacearum MolK2] Length = 605 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 288/564 (51%), Positives = 387/564 (68%), Gaps = 6/564 (1%) Query: 28 MRNLTVRFSLMSALALFSCMIVVGAAVGIFALGRANQATEYVHEIAEHVIVINDAYKDTT 87 ++N +VR L++ L F+ MIVVGAAVG+ AL AN +TE VH IA ++NDAYKD Sbjct: 5 LKNTSVRTGLLAILVTFALMIVVGAAVGVLALRTANVSTERVHTIATRSTLLNDAYKDMM 64 Query: 88 RTRSALTRAYANQKEKNDPAVTEAALKSAQASYERGLKFVDEFSKLPDLAGEEPAVKKEL 147 R R+ L R Y +E + AL SA+ ++ L +D F P + G + A+++ + Sbjct: 65 RARTGLARVYGMLRENPGAPLPPNALDSAETGMKKSLAQLDTFKSAPAIEGVDEALRQAI 124 Query: 148 IESARALSDLLAKASSQLKAGDTGAYSDLNDKQINPAGGRFSKALDAFQKRAMELNDNAA 207 ++A+A +D + +A + L+A D AY+ +N K + +G +S ++ FQK + +L + A Sbjct: 125 GQAAQAHADAVRRAMAALRASDAAAYAVINTKDVTASGAAWSVEIERFQKLSSQLVQDEA 184 Query: 208 SERTREYNMVVWMVIAGLIGAMFLVIGVHFLLRNIVLTPLNRAVHLLDLVANGDLTTKVD 267 Y ++V V G++ A+ L+ VH+ L V+TPLN AV +L VA GDL+ +V Sbjct: 185 DGGRGRYGLIVKFVSVGIVMALALIAAVHYALSVFVVTPLNDAVGVLTRVAEGDLSVQVK 244 Query: 268 VHSNNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTNAKEIAAGNMDLSSRTEQQASSL 327 NE+GRL SA+ M+ +LL TV +VRSSSD+++T A+EIA+GN+DLSSRTEQQ++SL Sbjct: 245 EGGRNELGRLLSAVARMRASLLQTVRQVRSSSDAVNTGAQEIASGNLDLSSRTEQQSASL 304 Query: 328 EETAASMEQLTGTVKQNADNALQANQLAHSASSTASKGGEVVSQVVDTMQAINESSRKIV 387 E+TAASMEQ+T TV N++NA QA+ LA SA+ AS+GGEVV VV TM I+ SSRK+ Sbjct: 305 EKTAASMEQMTSTVTNNSENARQASALAASAADLASRGGEVVRGVVSTMDEISASSRKMA 364 Query: 388 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLID 447 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAAAAKEIK LID Sbjct: 365 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQRSAAAAKEIKGLID 424 Query: 448 ASVEKVEAGSQLVEQAGATMGEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDE 507 ASV++V+AG+ LV QAG+TM E V +V+RV +IV +IA AS EQ+ GI Q+++A+++M++ Sbjct: 425 ASVDRVQAGNTLVAQAGSTMTETVDAVRRVANIVEDIASASAEQTQGIVQISQAVSEMEQ 484 Query: 508 VTQQNAALVEQAAAAAQSLQAQATNLVGAVSIFKIDAHQVASPAAKPRPATMAPPPAPAA 567 VTQQNAALVEQAAAAAQSL+ Q+ NL V+ F++D A P+P AP A Sbjct: 485 VTQQNAALVEQAAAAAQSLEEQSKNLTQVVAQFRLDGTDGAVAVVAPKPVQAAPVTA--- 541 Query: 568 PAAPALKTAPAAAAAPKAAPKLPP 591 A PA K P K PKL P Sbjct: 542 -AKPAGK--PPRPVVRKREPKLKP 562