BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3785.p (300 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate dehydratase [Herb... 582 e-164 ref|YP_003607225.1| 5-dehydro-4-deoxyglucarate dehydratase [Burk... 488 e-136 ref|ZP_03265227.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkh... 486 e-135 ref|YP_297890.1| 5-dehydro-4-deoxyglucarate dehydratase [Ralston... 484 e-135 ref|YP_001749675.1| 5-dehydro-4-deoxyglucarate dehydratase [Pseu... 484 e-135 >ref|YP_003776539.1| 5-dehydro-4-deoxyglucarate dehydratase [Herbaspirillum seropedicae SmR1] gb|ADJ64631.1| 5-dehydro-4-deoxyglucarate dehydratase protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 582 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 289/303 (95%), Positives = 294/303 (97%), Gaps = 4/303 (1%) Query: 2 YTPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFSL 61 YTPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFSL Sbjct: 4 YTPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFSL 63 Query: 62 VPGEYSDIIRTAVDTCSGKVPII----GPTRAAIAYAQEAERLGAHGILLMPHYLTEASQ 117 VPGEYSDIIRTAVDTC GKVPII G TRAAIAYAQEAERLGAHGILLMPHYLTEASQ Sbjct: 64 VPGEYSDIIRTAVDTCRGKVPIIAGAGGSTRAAIAYAQEAERLGAHGILLMPHYLTEASQ 123 Query: 118 DGIAAHVEAVCKSVNFGVIIYNRAVCKLNAETLQRLADRCPNLIGFKDGIGEIEPMVHIR 177 DGIAAHVEAVCKSV FGVIIYNRAVCKLNA+TLQ+LADRCPNLIGFKDGIGEIEPMVHIR Sbjct: 124 DGIAAHVEAVCKSVKFGVIIYNRAVCKLNADTLQKLADRCPNLIGFKDGIGEIEPMVHIR 183 Query: 178 RKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDHDTVGK 237 RKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDHDTVGK Sbjct: 184 RKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDHDTVGK 243 Query: 238 LIDDFFLPYLAIRNRKAGYAVSIVKAGAKIVGHDAGPVRTPLTDCTPEEHEELAALIKKL 297 LID+FFLPYLAIRNRKAGYAVSIVKAGA+I GHDAGPVRTPLTDCTPEEHEELAAL+ KL Sbjct: 244 LIDEFFLPYLAIRNRKAGYAVSIVKAGARIAGHDAGPVRTPLTDCTPEEHEELAALMNKL 303 Query: 298 GPQ 300 GPQ Sbjct: 304 GPQ 306 >ref|YP_003607225.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia sp. CCGE1002] gb|ADG17714.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia sp. CCGE1002] Length = 305 Score = 488 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 242/305 (79%), Positives = 269/305 (88%), Gaps = 5/305 (1%) Query: 1 MYTPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFS 60 M TPQ+LKQI+S GLLSFP+TDFD +GDFR TY ERLEWLAPYGASALF AGGTGEFFS Sbjct: 1 MTTPQELKQIVSEGLLSFPVTDFDAKGDFRANTYAERLEWLAPYGASALFVAGGTGEFFS 60 Query: 61 LVPGEYSDIIRTAVDTCSGKVPII----GPTRAAIAYAQEAERLGAHGILLMPHYLTEAS 116 L +Y+ +++TAV+ C GKVPI+ GPTR AIAYA+EA+RLGAHGILLMPHYLTEAS Sbjct: 61 LTQDDYTQVVKTAVEVCKGKVPILAGAGGPTRVAIAYAKEAQRLGAHGILLMPHYLTEAS 120 Query: 117 QDGIAAHVEAVCKSV-NFGVIIYNRAVCKLNAETLQRLADRCPNLIGFKDGIGEIEPMVH 175 QDGIAAH E VCK+V GVIIYNRA KLNA+ L+RLADRCPNLIGFKDG+GEIE MV Sbjct: 121 QDGIAAHAEEVCKAVPGMGVIIYNRANSKLNADMLERLADRCPNLIGFKDGVGEIENMVT 180 Query: 176 IRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDHDTV 235 IRR+LGDRF+YLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTA++FY+AIA +DH T Sbjct: 181 IRRRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYRAIAADDHATT 240 Query: 236 GKLIDDFFLPYLAIRNRKAGYAVSIVKAGAKIVGHDAGPVRTPLTDCTPEEHEELAALIK 295 GKLID+FFLPYL IRNR+AGYAVSIVKAGAK+VGHDAGPVR PLTD TPEE E+L ALIK Sbjct: 241 GKLIDEFFLPYLKIRNRRAGYAVSIVKAGAKLVGHDAGPVRAPLTDLTPEELEQLDALIK 300 Query: 296 KLGPQ 300 KLGPQ Sbjct: 301 KLGPQ 305 >ref|ZP_03265227.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia sp. H160] gb|EEA03133.1| 5-dehydro-4-deoxyglucarate dehydratase [Burkholderia sp. H160] Length = 305 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 241/305 (79%), Positives = 268/305 (87%), Gaps = 5/305 (1%) Query: 1 MYTPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFS 60 M TPQ+LKQI+S GLLSFP+TDFD +GDFR TY ERLEWLAPYGASALF AGGTGEFFS Sbjct: 1 MTTPQELKQIVSEGLLSFPVTDFDAKGDFRADTYAERLEWLAPYGASALFVAGGTGEFFS 60 Query: 61 LVPGEYSDIIRTAVDTCSGKVPII----GPTRAAIAYAQEAERLGAHGILLMPHYLTEAS 116 L +Y+ +++TAV+ C GKVPI+ GPTR AIAYA+EA+RLGAHGILLMPHYLTEAS Sbjct: 61 LTQDDYTQVVKTAVEVCRGKVPILAGAGGPTRVAIAYAKEAQRLGAHGILLMPHYLTEAS 120 Query: 117 QDGIAAHVEAVCKSV-NFGVIIYNRAVCKLNAETLQRLADRCPNLIGFKDGIGEIEPMVH 175 QDGIA H E VCK+V N GVIIYNRA KLNA+ L+RLA+RCPNLIGFKDG+GEIE MV Sbjct: 121 QDGIAEHAEQVCKAVPNMGVIIYNRANSKLNADMLERLAERCPNLIGFKDGVGEIENMVT 180 Query: 176 IRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDHDTV 235 IRR+LGDRF+YLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTA+EFY+AIA +DH T Sbjct: 181 IRRRLGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMEFYRAIAADDHATT 240 Query: 236 GKLIDDFFLPYLAIRNRKAGYAVSIVKAGAKIVGHDAGPVRTPLTDCTPEEHEELAALIK 295 GKLID+FFLPYL IRNR+AGYAVSIVKAGAK+VGHDAGPVR PLTD T EE E+L ALIK Sbjct: 241 GKLIDEFFLPYLKIRNRRAGYAVSIVKAGAKLVGHDAGPVRAPLTDLTAEEMEQLDALIK 300 Query: 296 KLGPQ 300 KLGPQ Sbjct: 301 KLGPQ 305 >ref|YP_297890.1| 5-dehydro-4-deoxyglucarate dehydratase [Ralstonia eutropha JMP134] gb|AAZ63046.1| Dihydrodipicolinate synthetase [Ralstonia eutropha JMP134] Length = 304 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 231/304 (75%), Positives = 271/304 (89%), Gaps = 4/304 (1%) Query: 1 MYTPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFS 60 M TPQ+LKQI+S GLLSFP+TDFD QG+FRP+TY++RLEWLAPYGASALFAAGGTGEFFS Sbjct: 1 MTTPQELKQIISEGLLSFPVTDFDTQGNFRPETYVKRLEWLAPYGASALFAAGGTGEFFS 60 Query: 61 LVPGEYSDIIRTAVDTCSGKVPII----GPTRAAIAYAQEAERLGAHGILLMPHYLTEAS 116 L P +YS++IRTAV+TC+GKVPI+ GPTR AIAYAQEA+RLGA GILLMPHYLTEA Sbjct: 61 LTPDDYSNVIRTAVETCAGKVPILAGAGGPTRVAIAYAQEAQRLGAKGILLMPHYLTEAC 120 Query: 117 QDGIAAHVEAVCKSVNFGVIIYNRAVCKLNAETLQRLADRCPNLIGFKDGIGEIEPMVHI 176 ++GIA H+E VCK+VN GVI+YNRA ++ A+ L+R+ DRCPNLIGFKDG+GEIE MV + Sbjct: 121 EEGIANHIEEVCKAVNIGVIVYNRANSRIGADLLERVVDRCPNLIGFKDGVGEIEAMVRV 180 Query: 177 RRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDHDTVG 236 RRKLGDR YLGGLPTAEVYAAAYKALGVPVYSSAVFNFIP+TA+EFY+A+A +DH T+G Sbjct: 181 RRKLGDRLAYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPRTAMEFYRAVAADDHATIG 240 Query: 237 KLIDDFFLPYLAIRNRKAGYAVSIVKAGAKIVGHDAGPVRTPLTDCTPEEHEELAALIKK 296 +LIDDFFLPYL IRNR+ GYAVSIVKAGA++VG+DAGPVR PLTD T +E E+L ALI+K Sbjct: 241 RLIDDFFLPYLDIRNRRQGYAVSIVKAGARLVGYDAGPVRAPLTDLTADETEKLDALIRK 300 Query: 297 LGPQ 300 LGPQ Sbjct: 301 LGPQ 304 >ref|YP_001749675.1| 5-dehydro-4-deoxyglucarate dehydratase [Pseudomonas putida W619] sp|B1J9C7|KDGD_PSEPW RecName: Full=Probable 5-dehydro-4-deoxyglucarate dehydratase; AltName: Full=5-keto-4-deoxy-glucarate dehydratase; Short=KDGDH gb|ACA73306.1| 5-dehydro-4-deoxyglucarate dehydratase [Pseudomonas putida W619] Length = 303 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 236/301 (78%), Positives = 267/301 (88%), Gaps = 4/301 (1%) Query: 4 PQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFSLVP 63 PQ+LK ILS GLLSFP+TDF+ QGDF YI+RLEWLAPYGASALFAAGGTGEFFSL Sbjct: 3 PQELKSILSHGLLSFPVTDFNAQGDFNQAGYIKRLEWLAPYGASALFAAGGTGEFFSLAA 62 Query: 64 GEYSDIIRTAVDTCSGKVPII----GPTRAAIAYAQEAERLGAHGILLMPHYLTEASQDG 119 EYS +I+TAVDTC+ VPI+ G TR AI YAQEAERLGA G+LL+PHYLTEASQDG Sbjct: 63 SEYSQVIKTAVDTCAKSVPILAGVGGSTRQAIEYAQEAERLGAKGLLLLPHYLTEASQDG 122 Query: 120 IAAHVEAVCKSVNFGVIIYNRAVCKLNAETLQRLADRCPNLIGFKDGIGEIEPMVHIRRK 179 +AAHVEAVCKSVN GV++YNR VC+LNA+ L++LA+RCPNLIG+KDG+G+IE MV IRR+ Sbjct: 123 VAAHVEAVCKSVNIGVVVYNRNVCRLNADLLEKLAERCPNLIGYKDGLGDIELMVSIRRR 182 Query: 180 LGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVEFYQAIAKEDHDTVGKLI 239 LGDRF+YLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTA++FY AIA++DH TVGKLI Sbjct: 183 LGDRFSYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAMDFYHAIARDDHATVGKLI 242 Query: 240 DDFFLPYLAIRNRKAGYAVSIVKAGAKIVGHDAGPVRTPLTDCTPEEHEELAALIKKLGP 299 DDFFLPYL IRNRKAGYAVSIVKAGAKI G+DAGPVRTPLTD T EE+E LAAL+ K+GP Sbjct: 243 DDFFLPYLDIRNRKAGYAVSIVKAGAKIAGYDAGPVRTPLTDLTAEEYEMLAALMDKMGP 302 Query: 300 Q 300 Q Sbjct: 303 Q 303