BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3784.p (262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776538.1| GntR family transcription regulator protein ... 414 e-114 ref|YP_003981615.1| GntR family transcriptional regulator [Achro... 277 1e-72 ref|YP_001118928.1| GntR family transcriptional regulator [Burkh... 267 1e-69 ref|YP_004750896.1| putative D-glucarate or D-galactorate regula... 266 2e-69 ref|ZP_04939194.1| regulatory protein, GntR [Burkholderia cenoce... 265 4e-69 >ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64630.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 236/253 (93%), Positives = 244/253 (96%) Query: 1 MDVSDTPNPLLRPRRKPQSLSQEVVAALTAMISNGSLKPGDKLPTESEIMQTQGVSRTVV 60 MDVSDTPNPLLRPRRKPQSLSQEVVAALTAMISNGSL PGDKLPTESEIMQTQGVSRTVV Sbjct: 1 MDVSDTPNPLLRPRRKPQSLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVV 60 Query: 61 REAISRLQAAGLVETRHGIGTFVLEVKKGSNINIDPATITTMRDLLALLELRISLETETA 120 REAISRLQAAGLVETRHGIGTFVLE KKG NINIDPATITTMRDLLALLELRISLETETA Sbjct: 61 REAISRLQAAGLVETRHGIGTFVLEAKKGGNINIDPATITTMRDLLALLELRISLETETA 120 Query: 121 GLAASRRSDAQLQEIREALDLFHANQKSGGDTVGPDFRFHFAIANATGNRYFIEIISHLG 180 GLAA+RR++ QLQEIREALDLF ANQ+ GGDTVGPDFRFHFAIANATGNRYFIEIISHLG Sbjct: 121 GLAAARRTEEQLQEIREALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLG 180 Query: 181 MGVIPRKRINTAELAHDQQASYLERVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 MGVIPRKRINTAELAHDQQASYL+RVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL Sbjct: 181 MGVIPRKRINTAELAHDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 Query: 241 RRAQEAAESAAGA 253 RRAQ+ AES + + Sbjct: 241 RRAQQEAESGSAS 253 >ref|YP_003981615.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP18900.1| bacterial regulatory protein, GntR family protein 61 [Achromobacter xylosoxidans A8] Length = 242 Score = 277 bits (708), Expect = 1e-72, Method: Composition-based stats. Identities = 153/241 (63%), Positives = 189/241 (78%), Gaps = 3/241 (1%) Query: 4 SDTPNPLLRPRRKPQSLSQEVVAALTAMISNGSLKPGDKLPTESEIMQTQGVSRTVVREA 63 +DTP + PRR+P++L+Q +V ++T I G+++PGDKLPTESEIM+ GVSRTVVREA Sbjct: 5 ADTP---VTPRRRPRNLAQGLVESITERIRGGNIRPGDKLPTESEIMRQFGVSRTVVREA 61 Query: 64 ISRLQAAGLVETRHGIGTFVLEVKKGSNINIDPATITTMRDLLALLELRISLETETAGLA 123 +SRLQA+GLVET HG+GT+ LE G + +DPA I T+RD+L LLELRI LE+E AGLA Sbjct: 62 LSRLQASGLVETHHGVGTYALEPSGGGDFRVDPADIATVRDVLVLLELRICLESEAAGLA 121 Query: 124 ASRRSDAQLQEIREALDLFHANQKSGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGV 183 A+RRS AQL E+R ALD F + GGDTV PDF+FH IA AT NRYF +++SHLG + Sbjct: 122 AARRSPAQLLEMRRALDAFKSALDGGGDTVTPDFQFHLLIAQATDNRYFADLMSHLGSAI 181 Query: 184 IPRKRINTAELAHDQQASYLERVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRA 243 IPR RIN+A+ AH+ +A+YL RV EHEDIY AI R DAEAARAAMR HL+NSRERLRRA Sbjct: 182 IPRTRINSAKFAHEDRAAYLARVNLEHEDIYGAIQRQDAEAARAAMRTHLSNSRERLRRA 241 Query: 244 Q 244 Q Sbjct: 242 Q 242 >ref|YP_001118928.1| GntR family transcriptional regulator [Burkholderia vietnamiensis G4] gb|ABO54093.1| transcriptional regulator, GntR family [Burkholderia vietnamiensis G4] Length = 253 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 154/242 (63%), Positives = 186/242 (76%) Query: 13 PRRKPQSLSQEVVAALTAMISNGSLKPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGL 72 PRR+ +SL+Q+VV ALTA I NG+L+PGDKLPTE+E+M QGVSRTVVREAISR+QA+GL Sbjct: 10 PRRRARSLAQDVVDALTAQIENGTLRPGDKLPTETEVMAAQGVSRTVVREAISRMQASGL 69 Query: 73 VETRHGIGTFVLEVKKGSNINIDPATITTMRDLLALLELRISLETETAGLAASRRSDAQL 132 +ETRHGIG+FVLE + + IDPATITT+RD+LA+LELRISLE+E A LAA R SDA L Sbjct: 70 IETRHGIGSFVLEPSRRRALGIDPATITTLRDVLAVLELRISLESECASLAAQRASDADL 129 Query: 133 QEIREALDLFHANQKSGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTA 192 +R ALD + G DT DF+FH IA +TGNRYF++I++ LG +IPR R+N+A Sbjct: 130 AALRRALDAIASGAGGGHDTAQLDFQFHLQIAQSTGNRYFVDIMTQLGASIIPRTRVNSA 189 Query: 193 ELAHDQQASYLERVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQEAAESAAG 252 A D Y+ R+ EHEDIYEAIAR D EAARAAMR HLTNSRERLRRA EAAE+ Sbjct: 190 RFAGDDLERYVARLNHEHEDIYEAIARHDPEAARAAMRTHLTNSRERLRRAHEAAEAERD 249 Query: 253 AQ 254 Q Sbjct: 250 TQ 251 >ref|YP_004750896.1| putative D-glucarate or D-galactorate regulator, GntR family [Collimonas fungivorans Ter331] gb|AEK60073.1| putative D-glucarate or D-galactorate regulator, GntR family [Collimonas fungivorans Ter331] Length = 256 Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats. Identities = 154/239 (64%), Positives = 188/239 (78%) Query: 13 PRRKPQSLSQEVVAALTAMISNGSLKPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGL 72 PR+K ++L+Q VVA + I +GS KPGDKLPTESE+M+TQGVSRTV+REAIS LQA+GL Sbjct: 18 PRKKHRNLAQSVVANIADSIRSGSSKPGDKLPTESELMRTQGVSRTVIREAISHLQASGL 77 Query: 73 VETRHGIGTFVLEVKKGSNINIDPATITTMRDLLALLELRISLETETAGLAASRRSDAQL 132 VETRHGIGTFVL SN +IDP T+ TMRD+LA+LELRISLE E AGLAA+RRSD QL Sbjct: 78 VETRHGIGTFVLAASSSSNFDIDPETVITMRDILAILELRISLEAEAAGLAAARRSDEQL 137 Query: 133 QEIREALDLFHANQKSGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTA 192 ++R ALD F + GD+V D +FH IA ATGNRYF++I++HLG +IPR RIN+A Sbjct: 138 AQMRMALDAFQKSAHEHGDSVAADVQFHLHIAQATGNRYFVDILTHLGTTIIPRTRINSA 197 Query: 193 ELAHDQQASYLERVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQEAAESAA 251 +LAHD A+YL+RV REHEDIY AI R D E ARAAMR HL+NSRERLR+ Q++ A+ Sbjct: 198 KLAHDDPAAYLDRVHREHEDIYNAIVRQDPETARAAMRTHLSNSRERLRKVQDSMALAS 256 >ref|ZP_04939194.1| regulatory protein, GntR [Burkholderia cenocepacia PC184] gb|EAY62365.1| regulatory protein, GntR [Burkholderia cenocepacia PC184] Length = 279 Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats. Identities = 155/240 (64%), Positives = 186/240 (77%) Query: 13 PRRKPQSLSQEVVAALTAMISNGSLKPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGL 72 PRR+ +SL+Q+VV ALTA I NG+L+PGDKLPTE+E+M QGVSRTVVREAISR+QA+GL Sbjct: 40 PRRRARSLAQDVVDALTAQIENGTLRPGDKLPTETEVMAAQGVSRTVVREAISRMQASGL 99 Query: 73 VETRHGIGTFVLEVKKGSNINIDPATITTMRDLLALLELRISLETETAGLAASRRSDAQL 132 VETRHGIG+FVLE + + IDPATITT+RD+LA+LELRISLE+E A LAA R +DA L Sbjct: 100 VETRHGIGSFVLEPSRRQTLGIDPATITTLRDVLAVLELRISLESECASLAAQRANDADL 159 Query: 133 QEIREALDLFHANQKSGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTA 192 +R ALD G DT DF+FH IA +TGNRYF++I++ LG +IPR R+N+A Sbjct: 160 AALRRALDAIATGAGGGRDTAQLDFQFHLQIAQSTGNRYFVDIMTQLGTSIIPRTRVNSA 219 Query: 193 ELAHDQQASYLERVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERLRRAQEAAESAAG 252 A D Y+ R+ EHEDIYEAIAR D EAARAAMR HLTNSRERLRRA EAAE+ AG Sbjct: 220 RFAGDDLERYVGRLNHEHEDIYEAIARHDPEAARAAMRTHLTNSRERLRRAHEAAEAEAG 279