BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3781.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004753777.1| Iron-sulfur cluster assembly scaffold protei...   238   2e-61
ref|YP_003776535.1| FeS cluster assembly scaffold protein [Herba...   238   2e-61
ref|ZP_08273678.1| Iron-sulfur cluster assembly scaffold protein...   230   5e-59
ref|YP_001352943.1| nitrogen fixation protein NifU [Janthinobact...   225   2e-57
ref|YP_001100494.1| iron-sulfur template protein IscU [Herminiim...   224   3e-57

>ref|YP_004753777.1| Iron-sulfur cluster assembly scaffold protein IscU [Collimonas
           fungivorans Ter331]
 gb|AEK62954.1| Iron-sulfur cluster assembly scaffold protein IscU [Collimonas
           fungivorans Ter331]
          Length = 132

 Score =  238 bits (607), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 126/132 (95%), Positives = 132/132 (100%)

Query: 1   MSYSEKVLDHYENPRNVGAFEKGDDTVGTGMVGAPACGDVMKLQIKVGADGVIQDAKFKT 60
           MSYSEKVLDHYENPRNVGAFEKGD+TVGTGMVGAPACGDVMKLQIKVGADG+IQDAKFKT
Sbjct: 1   MSYSEKVLDHYENPRNVGAFEKGDETVGTGMVGAPACGDVMKLQIKVGADGIIQDAKFKT 60

Query: 61  YGCGSAIASSSLVTEWVKGKTLDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVQD 120
           YGCGSAIASSSLVTEWVKGKTLD+A+SIKNTQIAEELALPPVKIHCSILAEDAIKAAV+D
Sbjct: 61  YGCGSAIASSSLVTEWVKGKTLDQAMSIKNTQIAEELALPPVKIHCSILAEDAIKAAVED 120

Query: 121 YKAKHGEQQQAA 132
           YKAKHGEQ+QAA
Sbjct: 121 YKAKHGEQKQAA 132


>ref|YP_003776535.1| FeS cluster assembly scaffold protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ64627.1| FeS cluster assembly scaffold protein [Herbaspirillum seropedicae
           SmR1]
          Length = 132

 Score =  238 bits (607), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 128/132 (96%), Positives = 131/132 (99%)

Query: 1   MSYSEKVLDHYENPRNVGAFEKGDDTVGTGMVGAPACGDVMKLQIKVGADGVIQDAKFKT 60
           MSYSEKVLDHYENPRNVGAFEKGD+TVGTGMVGAPACGDVMKLQIKVGADGVIQDAKFKT
Sbjct: 1   MSYSEKVLDHYENPRNVGAFEKGDETVGTGMVGAPACGDVMKLQIKVGADGVIQDAKFKT 60

Query: 61  YGCGSAIASSSLVTEWVKGKTLDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVQD 120
           YGCGSAIASSSLVTEWVKGKTLDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVQD
Sbjct: 61  YGCGSAIASSSLVTEWVKGKTLDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVQD 120

Query: 121 YKAKHGEQQQAA 132
           YKAKHG +Q+AA
Sbjct: 121 YKAKHGAEQKAA 132


>ref|ZP_08273678.1| Iron-sulfur cluster assembly scaffold protein IscU
           [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32850.1| Iron-sulfur cluster assembly scaffold protein IscU
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 135

 Score =  230 bits (587), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 117/125 (93%), Positives = 123/125 (98%)

Query: 1   MSYSEKVLDHYENPRNVGAFEKGDDTVGTGMVGAPACGDVMKLQIKVGADGVIQDAKFKT 60
           M+YSEKVLDHYENPRNVGAF+KGDDT+GTGMVGAPACGDVMKLQIKVGADG+IQDAKFKT
Sbjct: 1   MAYSEKVLDHYENPRNVGAFDKGDDTIGTGMVGAPACGDVMKLQIKVGADGIIQDAKFKT 60

Query: 61  YGCGSAIASSSLVTEWVKGKTLDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVQD 120
           YGCGSAIASSSLVTEWVKGKTLDEA+SIKNTQIAEELALPPVKIHCSILAEDAIKAAV D
Sbjct: 61  YGCGSAIASSSLVTEWVKGKTLDEAMSIKNTQIAEELALPPVKIHCSILAEDAIKAAVLD 120

Query: 121 YKAKH 125
           YK +H
Sbjct: 121 YKTRH 125


>ref|YP_001352943.1| nitrogen fixation protein NifU [Janthinobacterium sp. Marseille]
 gb|ABR90114.1| nitrogen fixation protein NifU [Janthinobacterium sp. Marseille]
          Length = 134

 Score =  225 bits (573), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 120/134 (89%), Positives = 129/134 (96%), Gaps = 2/134 (1%)

Query: 1   MSYSEKVLDHYENPRNVGAFEKGDDTVGTGMVGAPACGDVMKLQIKVGADGVIQDAKFKT 60
           M+YS+KVLDHYENPRNVGAF+KGD+T+GTGMVGAPACGDVMKLQIKVGADGVIQDAKFKT
Sbjct: 1   MAYSDKVLDHYENPRNVGAFDKGDETIGTGMVGAPACGDVMKLQIKVGADGVIQDAKFKT 60

Query: 61  YGCGSAIASSSLVTEWVKGKTLDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVQD 120
           YGCGSAIASSSLVTEWVKGKTLD+A+SIKNTQIAEELALPPVKIHCSILAEDAIKAAV D
Sbjct: 61  YGCGSAIASSSLVTEWVKGKTLDQAMSIKNTQIAEELALPPVKIHCSILAEDAIKAAVLD 120

Query: 121 YKAKHG--EQQQAA 132
           YK KHG  E ++AA
Sbjct: 121 YKTKHGVAESKEAA 134


>ref|YP_001100494.1| iron-sulfur template protein IscU [Herminiimonas arsenicoxydans]
 emb|CAL62372.1| FeS cluster assembly scaffold IscU [Herminiimonas arsenicoxydans]
          Length = 134

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 117/126 (92%), Positives = 124/126 (98%)

Query: 1   MSYSEKVLDHYENPRNVGAFEKGDDTVGTGMVGAPACGDVMKLQIKVGADGVIQDAKFKT 60
           M+YS+KVLDHYENPRNVGAF+KGD+T+GTGMVGAPACGDVMKLQIKVGADGVI+DAKFKT
Sbjct: 1   MAYSDKVLDHYENPRNVGAFDKGDETIGTGMVGAPACGDVMKLQIKVGADGVIEDAKFKT 60

Query: 61  YGCGSAIASSSLVTEWVKGKTLDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVQD 120
           YGCGSAIASSSLVTEWVKGKTLD+ALSIKNTQIAEELALPPVKIHCSILAEDAIKAAV D
Sbjct: 61  YGCGSAIASSSLVTEWVKGKTLDQALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVLD 120

Query: 121 YKAKHG 126
           YK KHG
Sbjct: 121 YKTKHG 126