BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3776.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776530.1| ferredoxin [2Fe-2S]-type protein [Herbaspiri...   205   2e-51
ref|ZP_08273682.1| Ferredoxin, 2Fe-2S [Oxalobacteraceae bacteriu...   179   9e-44
ref|YP_004753771.1| ferredoxin, 2Fe-2S [Collimonas fungivorans T...   172   2e-41
emb|CAL62368.1| 2Fe-2S ferredoxin [Herminiimonas arsenicoxydans]      169   1e-40
ref|YP_001352947.1| ferredoxin, 2Fe-2S type [Janthinobacterium s...   169   1e-40

>ref|YP_003776530.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64622.1| ferredoxin [2Fe-2S]-type protein [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE 60
           MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE
Sbjct: 1   MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE 60

Query: 61  TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASENH 112
           TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASENH
Sbjct: 61  TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASENH 112


>ref|ZP_08273682.1| Ferredoxin, 2Fe-2S [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF32854.1| Ferredoxin, 2Fe-2S [Oxalobacteraceae bacterium IMCC9480]
          Length = 112

 Score =  179 bits (455), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 90/112 (80%), Positives = 100/112 (89%)

Query: 1   MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE 60
           M QIVILPHPVLCPEG+VIDAP GK+LCD LLDSDIDIEHACEKSCACTTCH+VIREGF 
Sbjct: 1   MAQIVILPHPVLCPEGAVIDAPKGKSLCDVLLDSDIDIEHACEKSCACTTCHIVIREGFR 60

Query: 61  TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASENH 112
           +L +P +KEEDLLDMAWGLEA SRLSCQ ++G+ DL +EIPKYTIN  SENH
Sbjct: 61  SLGEPGEKEEDLLDMAWGLEANSRLSCQALVGDVDLVIEIPKYTINQVSENH 112


>ref|YP_004753771.1| ferredoxin, 2Fe-2S [Collimonas fungivorans Ter331]
 gb|AEK62948.1| Ferredoxin, 2Fe-2S [Collimonas fungivorans Ter331]
          Length = 112

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/112 (75%), Positives = 100/112 (89%)

Query: 1   MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE 60
           MPQIV+LPHP  CPEG VI+AP G+++CDALL +DI+IEHACEKSCACTTCHV++REGF 
Sbjct: 1   MPQIVVLPHPTFCPEGVVIEAPRGQSVCDALLANDIEIEHACEKSCACTTCHVIVREGFA 60

Query: 61  TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASENH 112
           +L +  DKEEDLLDMAWGLEATSRLSCQ ++ ++DL VEIPKYTINHASENH
Sbjct: 61  SLGELDDKEEDLLDMAWGLEATSRLSCQAIVADEDLVVEIPKYTINHASENH 112


>emb|CAL62368.1| 2Fe-2S ferredoxin [Herminiimonas arsenicoxydans]
          Length = 112

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/112 (74%), Positives = 101/112 (90%)

Query: 1   MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE 60
           MPQIV+LPH  LCP+G+VIDAPAGK++CD LL++DIDIEHACEKSCACTTCHV++REGF 
Sbjct: 1   MPQIVVLPHHALCPDGAVIDAPAGKSICDVLLENDIDIEHACEKSCACTTCHVIVREGFS 60

Query: 61  TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASENH 112
           +L++  +KEEDLLD AWGLEA SRLSCQ ++ ++DL VEIP+YTINHASENH
Sbjct: 61  SLNEAEEKEEDLLDKAWGLEAASRLSCQAIVADEDLVVEIPRYTINHASENH 112


>ref|YP_001352947.1| ferredoxin, 2Fe-2S type [Janthinobacterium sp. Marseille]
 gb|ABR91109.1| ferredoxin, 2Fe-2S type [Janthinobacterium sp. Marseille]
          Length = 112

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/112 (74%), Positives = 100/112 (89%)

Query: 1   MPQIVILPHPVLCPEGSVIDAPAGKTLCDALLDSDIDIEHACEKSCACTTCHVVIREGFE 60
           MPQIV+LPH  LCP+G+VI+APAGK++CD LL++DIDIEHACEKSCACTTCHV++REGF 
Sbjct: 1   MPQIVVLPHHTLCPDGAVIEAPAGKSICDVLLENDIDIEHACEKSCACTTCHVIVREGFA 60

Query: 61  TLDDPTDKEEDLLDMAWGLEATSRLSCQVVLGEDDLTVEIPKYTINHASENH 112
           +L++  D EEDLLD AWGLEA SRLSCQ ++ E+DL VEIP+YTINHASENH
Sbjct: 61  SLNEAGDTEEDLLDKAWGLEAASRLSCQAIVAEEDLVVEIPRYTINHASENH 112