BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3774.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776528.1| hypothetical protein Hsero_3136 [Herbaspiril...   166   7e-40
ref|YP_775941.1| hypothetical protein Bamb_4054 [Burkholderia am...    84   6e-15
ref|YP_003774004.1| hypothetical protein Hsero_0577 [Herbaspiril...    59   2e-07
ref|YP_003773885.1| hypothetical protein Hsero_0452 [Herbaspiril...    57   1e-06
gb|EGH12624.1| hypothetical protein PSYMP_21681 [Pseudomonas syr...    57   1e-06

>ref|YP_003776528.1| hypothetical protein Hsero_3136 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64620.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score =  166 bits (421), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 76/99 (76%), Positives = 84/99 (84%), Gaps = 1/99 (1%)

Query: 1   MPTRILKLIGLAFLIYLGAGLIVHLTRPHYARCDFYNRPDTLDGGVKFLNGTSYRFQMCG 60
           M TR +K  GLA L+ L  GLI+H TRPHY RCDFYNRPDTLDGGVK LNGTSYRFQMCG
Sbjct: 56  MQTRTVKFFGLALLVSLALGLIIHFTRPHYGRCDFYNRPDTLDGGVKLLNGTSYRFQMCG 115

Query: 61  TGGNDQDGSDDNIELKVFDEKGTLLARRYFAVNC-AGKA 98
           TGGNDQDG+DD IELKVF+++GTLLARRYF+VN  AGK 
Sbjct: 116 TGGNDQDGTDDKIELKVFNDQGTLLARRYFSVNWYAGKG 154


>ref|YP_775941.1| hypothetical protein Bamb_4054 [Burkholderia ambifaria AMMD]
 gb|ABI89607.1| hypothetical protein Bamb_4054 [Burkholderia ambifaria AMMD]
          Length = 103

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/52 (69%), Positives = 43/52 (82%)

Query: 42 LDGGVKFLNGTSYRFQMCGTGGNDQDGSDDNIELKVFDEKGTLLARRYFAVN 93
          +DGG K +NG  YRF+MCGTGGNDQD ++D I L+VF +KG LLARRYFAVN
Sbjct: 1  MDGGTKNMNGVQYRFKMCGTGGNDQDATNDQIALEVFSDKGELLARRYFAVN 52


>ref|YP_003774004.1| hypothetical protein Hsero_0577 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62096.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 8/84 (9%)

Query: 14 LIYLGAGLIVHLTRPHYARCDFYNRPDTLDGGVKFLNGTSYRFQMCGTGGNDQDGSDDNI 73
          ++Y+G GL  HL +P Y RC+ + +   L+GG K  +G  Y  ++C  G + ++G+   I
Sbjct: 2  VVYIGFGLCAHLAQPTYGRCESFTK--DLNGGEKIFHGAMYDIKLC--GADIKNGT--KI 55

Query: 74 ELKVFDEKGTLLARRYFA--VNCA 95
           L+VF   G LLA RYF+  VN A
Sbjct: 56 RLQVFGRSGDLLAERYFSYYVNSA 79


>ref|YP_003773885.1| hypothetical protein Hsero_0452 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61977.1| hypothetical protein Hsero_0452 [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 6/85 (7%)

Query: 11  LAFLIYLGAGLIVHLTR---PHYARCDFYNRPDTLDGGVKFLNGTSYRFQMCGTGGNDQD 67
           L +++ +  GL + +T    P Y  C+ Y +   L+GGV+   G S+R ++CG G  + D
Sbjct: 99  LLYMLAMSYGLAIFVTTGLAPQYRDCETYTQ--KLNGGVRQYRGLSFRVELCGAGPRESD 156

Query: 68  GSDDNIELKVFDEKGTLLARRYFAV 92
              D + L+++DE G L A RYF V
Sbjct: 157 -RLDRVRLRIYDESGDLRAVRYFGV 180


>gb|EGH12624.1| hypothetical protein PSYMP_21681 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 150

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 8/92 (8%)

Query: 13  FLIYLGAGLIVHLTR----PHYARCDFYNRPDTLDGGVKFLNGTSYRFQMCGTGGNDQDG 68
           FL ++   L+V+        +Y+ C  YN  + L+GG K  N  ++   +CG G N+   
Sbjct: 18  FLFFMSISLVVYAALFSLLDNYS-CQHYNHTEKLNGGSKSFNNKTFTIAICGAGVNNSLF 76

Query: 69  SDDNIE---LKVFDEKGTLLARRYFAVNCAGK 97
           + D +E   L +FD++G LLARRY+ V+  G+
Sbjct: 77  NGDGMERVRLTIFDDQGELLARRYYKVSWYGQ 108