BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3773.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774005.1| hypothetical protein Hsero_0578 [Herbaspiril... 425 e-117 ref|YP_775940.1| hypothetical protein Bamb_4053 [Burkholderia am... 412 e-113 ref|ZP_02907575.1| conserved hypothetical protein [Burkholderia ... 412 e-113 ref|ZP_02381325.1| hypothetical protein BuboB_26625 [Burkholderi... 405 e-111 ref|YP_003750647.1| hypothetical protein RPSI07_mp1732 [Ralstoni... 297 2e-78 >ref|YP_003774005.1| hypothetical protein Hsero_0578 [Herbaspirillum seropedicae SmR1] gb|ADJ62097.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 406 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 198/298 (66%), Positives = 238/298 (79%), Gaps = 1/298 (0%) Query: 1 MDKLGWIVSAKLARTWFSSAAHIFNDDPHSEQPLNDSVVTLDWALKFGSVRKKYEKFLNS 60 MD LGW VSAKLAR WFS AHI++++P S QP+ND+ VTL+W LKFG V+KKYE+ L+ Sbjct: 109 MDNLGWTVSAKLARRWFSGPAHIYDNNPKSIQPINDTDVTLEWVLKFGIVKKKYEELLSK 168 Query: 61 DIYTPRAVGAATDAVKGFVGHLF-ESRSSNLSVDTSPFLGDLRNFHAEWQFQKLTISDGD 119 DIY AV +A + + F E R+++LS +TS L DL FH +WQFQ ++SDGD Sbjct: 169 DIYNAAAVDSAKQKILTRIRKRFSEERTNDLSFNTSQSLTDLLQFHIDWQFQLSSLSDGD 228 Query: 120 TFNGLTLTDLTGSLANFNIYAAVGNVEILAEKYFRYERGRTLYCLNATGKITHIYVYVKD 179 TF+G TLTDLTG+LANFNIY AVG+V+I EKYFRYE+ ++LYCL+A G ITH+Y YVKD Sbjct: 229 TFDGFTLTDLTGALANFNIYVAVGSVDISGEKYFRYEKSKSLYCLDAVGTITHVYAYVKD 288 Query: 180 NYSFNGKQYLGHWNKHGIIIAPGTWLTGSSSSKKDTDIDIWLKAINKPVDTRKGLFGKFK 239 NYSFNG+QYLGHWN+HGIIIAPGTWL GS+ K+D DIDIW+KAINKPVDTR+ F F+ Sbjct: 289 NYSFNGEQYLGHWNRHGIIIAPGTWLIGSNKPKRDLDIDIWVKAINKPVDTRRSFFANFR 348 Query: 240 EPDVYFPVFNADYNRWREKHQRGGDFMVYSKPLHLKLKKPIDLKLGEICRPESLSSLG 297 E DVYFPVFNADYNRWREKH RG DFM+YSKP++LKLKKPI KLGEICR E L+SL Sbjct: 349 ESDVYFPVFNADYNRWREKHDRGQDFMIYSKPVYLKLKKPIVFKLGEICRLEPLNSLA 406 >ref|YP_775940.1| hypothetical protein Bamb_4053 [Burkholderia ambifaria AMMD] gb|ABI89606.1| conserved hypothetical protein [Burkholderia ambifaria AMMD] Length = 407 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 195/298 (65%), Positives = 237/298 (79%), Gaps = 1/298 (0%) Query: 1 MDKLGWIVSAKLARTWFSSAAHIFNDDPHSEQPLNDSVVTLDWALKFGSVRKKYEKFLNS 60 MD LGW VSA+LAR WF+ AH +ND P S QP N+ VTLDW LKFGSV+KKY++ ++ Sbjct: 110 MDNLGWKVSARLARIWFAGPAHTYNDAPTSTQPSNEVDVTLDWVLKFGSVKKKYKRLIDR 169 Query: 61 DIYTPRAVGAATDAVKGFVGHLFESRSSNLSVDTSPFLGDLRNFHAEWQFQKLTISDGDT 120 DIY+ R++ AATD ++ FV LF R S L+++TS GDLR H +WQFQ L I + DT Sbjct: 170 DIYSERSIRAATDIIEPFVKKLFLERHSTLNINTSRLTGDLRKLHNDWQFQLLPIRNWDT 229 Query: 121 FNGLTLTDLTGSLANFNIYAAVGNVEILA-EKYFRYERGRTLYCLNATGKITHIYVYVKD 179 + LT TDLTG+LANFNIY A+GNVEI + EKYF+YE+ YCLNATGKITHIY+YVKD Sbjct: 230 LHNLTPTDLTGALANFNIYVAIGNVEISSREKYFKYEKSGNSYCLNATGKITHIYLYVKD 289 Query: 180 NYSFNGKQYLGHWNKHGIIIAPGTWLTGSSSSKKDTDIDIWLKAINKPVDTRKGLFGKFK 239 +YSFNGKQYLGHWNK G+IIAPG LT SSS K+D+DIDI K+INKPVDTR+ LFGKFK Sbjct: 290 SYSFNGKQYLGHWNKRGVIIAPGALLTESSSPKRDSDIDILAKSINKPVDTRRSLFGKFK 349 Query: 240 EPDVYFPVFNADYNRWREKHQRGGDFMVYSKPLHLKLKKPIDLKLGEICRPESLSSLG 297 E DVYFPV+NADYNRWRE+H+RG DFM+YSKP++LKL KPI+ +LGEICR E ++L Sbjct: 350 ESDVYFPVYNADYNRWRERHRRGMDFMIYSKPVYLKLNKPINFELGEICRLEPSNTLA 407 >ref|ZP_02907575.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] gb|EDT41279.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] Length = 315 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 193/300 (64%), Positives = 239/300 (79%), Gaps = 3/300 (1%) Query: 1 MDKLGWIVSAKLARTWFSSAAHIFNDDPHSEQPLNDSVVTLDWALKFGSVRKKYEKFLNS 60 MD LGW VSAKLAR WF+S+ HI+ND+ S QP++ VTLDW LKFGSVR+KYEK L Sbjct: 16 MDNLGWRVSAKLARIWFASSEHIYNDNAKSIQPIDSDSVTLDWTLKFGSVRRKYEKLLAE 75 Query: 61 DIYTPRAVGAATDAVKGFVGHLF-ESRSSNLSVDTSPFLGDLRNFHAEWQFQKLTISDGD 119 DIY A+ A + + +F E R +NL+++T+ FL D+R+FH +WQFQ +IS+ D Sbjct: 76 DIYRDTAIVEARTKILAKINKMFSEDRRANLNINTTQFLSDIRHFHIDWQFQLASISNWD 135 Query: 120 TFNGLTLTDLTGSLANFNIYAAVGNVEILAEKYFRYERGRTLYCLNATGKITHIYVYVKD 179 T L TDLTG+LANFNIYAA+GN+EI+ EKYFRYE+ YCLNA GKITH+YVYVKD Sbjct: 136 TLENLAPTDLTGALANFNIYAAIGNLEIVGEKYFRYEKTSNFYCLNAIGKITHVYVYVKD 195 Query: 180 NYSFNGKQYLGHWNKHGIIIAPGTWLTGSSSS--KKDTDIDIWLKAINKPVDTRKGLFGK 237 NYSFNG QYLGHWNK G+IIAPG ++GS+SS K+DTD+DIW+K+INKPVDTRK LFGK Sbjct: 196 NYSFNGIQYLGHWNKRGVIIAPGPVISGSASSSPKRDTDVDIWVKSINKPVDTRKSLFGK 255 Query: 238 FKEPDVYFPVFNADYNRWREKHQRGGDFMVYSKPLHLKLKKPIDLKLGEICRPESLSSLG 297 FKEPDV++PV+N+DY+RWR KH RGGDFM+YSKP++LKLKKP+++KLGEICR SLG Sbjct: 256 FKEPDVFYPVYNSDYSRWRAKHHRGGDFMIYSKPVYLKLKKPVEIKLGEICRLAPSESLG 315 >ref|ZP_02381325.1| hypothetical protein BuboB_26625 [Burkholderia ubonensis Bu] Length = 403 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 188/294 (63%), Positives = 234/294 (79%), Gaps = 3/294 (1%) Query: 1 MDKLGWIVSAKLARTWFSSAAHIFNDDPHSEQPLNDSVVTLDWALKFGSVRKKYEKFLNS 60 MD LGW VSA+LAR WF++ A++++++P S QPL+ VTLDW LKFGSVRKKYE L + Sbjct: 107 MDNLGWKVSARLARLWFATPANVYDNNPKSVQPLDTDDVTLDWTLKFGSVRKKYENLLGN 166 Query: 61 DIYTPRAVGAATDAVKGFVGHLF-ESRSSNLSVDTSPFLGDLRNFHAEWQFQKLTISDGD 119 DIY AV A + + F E R +NLS +T+ FL D+R FH +WQFQ +IS+ D Sbjct: 167 DIYRDAAVALAKGKILAQIKKRFSEDRGANLSFNTTQFLSDIRQFHIDWQFQLASISNWD 226 Query: 120 TFNGLTLTDLTGSLANFNIYAAVGNVEILAEKYFRYERGRTLYCLNATGKITHIYVYVKD 179 TF LT TDLTG+LANFNIY A+GNVEI EKY+RYE+ LYC++A G+ITHIYVYVKD Sbjct: 227 TFENLTPTDLTGALANFNIYVAIGNVEISGEKYYRYEQPSNLYCVDAVGQITHIYVYVKD 286 Query: 180 NYSFNGKQYLGHWNKHGIIIAPGTWLTGS--SSSKKDTDIDIWLKAINKPVDTRKGLFGK 237 NYSFNG QYLGHWNKHG+IIAPG ++GS SS K+DTD DIW+K+I+KPVDTR+ FGK Sbjct: 287 NYSFNGLQYLGHWNKHGVIIAPGPVISGSGASSPKRDTDADIWVKSIDKPVDTRRSFFGK 346 Query: 238 FKEPDVYFPVFNADYNRWREKHQRGGDFMVYSKPLHLKLKKPIDLKLGEICRPE 291 FKEPDV++PV+N+DY+RWR+KH RGGDFM+YSKP+++KLK PID+KLGEICR E Sbjct: 347 FKEPDVFYPVYNSDYSRWRDKHHRGGDFMIYSKPVYMKLKYPIDIKLGEICRQE 400 >ref|YP_003750647.1| hypothetical protein RPSI07_mp1732 [Ralstonia solanacearum PSI07] emb|CBJ36051.1| conserved hypothethical protein [Ralstonia solanacearum PSI07] Length = 443 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 151/325 (46%), Positives = 211/325 (64%), Gaps = 31/325 (9%) Query: 1 MDKLGWIVSAKLARTWFSSAAHIFNDDPHSEQPLNDSVVTLDWALKFGSVRKKYEKFLNS 60 M+K+GW ++AK+AR WF+ +HI+ND P SEQPL++++VTL+WALK+G V+ + + L Sbjct: 121 MEKMGWPIAAKVARKWFAGPSHIYNDKPDSEQPLDNTIVTLNWALKYGKVKDRLSELLFE 180 Query: 61 DIYTPRAVGAATDAV-----KGFVGHLFESRSSNLSVDTSPFLGDLRNFHAEWQFQKLTI 115 DIY+ RA+ + K F G +S S NLS +T+ D+R FH +WQ Q+ I Sbjct: 181 DIYSERALPIIKRKILQHVTKNFTGT--KSLSPNLSFETAVIDYDIRRFHIDWQIQQKKI 238 Query: 116 SDGDTFNGLTLTDLTGSLANFNIYAAVGNVEILAEKYFRYERGRTLYCLNATGKITHIYV 175 S DTF+G TLTDL+G+L NF +YAA+G VE+ +EK+F+Y YC+++ K+THIY+ Sbjct: 239 STFDTFDGTTLTDLSGTLGNFLLYAAIGKVEVSSEKFFKYGNKPAEYCIDSLAKLTHIYI 298 Query: 176 YVKDNYSFNGK-----QYLGHWNKHGII-------------IAPGTWLTGSSSSKKDTDI 217 Y+KDNYSFN K QYLGHWNK+G+I + P + + ++ I Sbjct: 299 YLKDNYSFNDKDPSNSQYLGHWNKNGMITSYVLAANDLLGQVKPELRMRLNGGKIEEERI 358 Query: 218 DIW-----LKAINKPVDTRKGLFGKFKEPDVYFPVFNADYNRWREKHQRGGDFMVYSKPL 272 + W K ++KP+DTR+G F K E DVY+PV+N YN WREKH+RGGDFM+YSKP Sbjct: 359 N-WNYLSVRKEVDKPIDTRRGFFSKLLEKDVYWPVYNRSYNEWREKHKRGGDFMIYSKPQ 417 Query: 273 HLKLKKPIDLKLGEICRPESLSSLG 297 KLK PI +KL ICRP +S+G Sbjct: 418 LYKLKTPIVIKLETICRPYDSTSIG 442