BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3770.p (242 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776523.1| two component LuxR family transcription regu... 348 6e-94 ref|YP_002983011.1| two component LuxR family transcriptional re... 233 1e-59 ref|YP_001900970.1| two component LuxR family transcriptional re... 230 2e-58 ref|ZP_07777236.1| DNA-binding response regulator, LuxR family [... 207 1e-51 ref|NP_902071.1| transcription regulator [Chromobacterium violac... 205 5e-51 >ref|YP_003776523.1| two component LuxR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64615.1| two component LuxR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 282 Score = 348 bits (892), Expect = 6e-94, Method: Composition-based stats. Identities = 198/243 (81%), Positives = 216/243 (88%), Gaps = 4/243 (1%) Query: 3 WTLASALRIALLDDHAVVRYGLAKRLAEEPDFTVVGAFATSKELMAALRASPADLLLIDY 62 WTLAS +RIALLDDHAVVRYGLA RLAEEPD VVG+FATSKELM ALRASPADLLLIDY Sbjct: 41 WTLASRMRIALLDDHAVVRYGLAARLAEEPDLEVVGSFATSKELMTALRASPADLLLIDY 100 Query: 63 SLGSNDIDGLNLIRALRVRFPRSKILVTSAHSSPATVAMAMKAGARGFVSKSQELAELIL 122 SLGSNDIDGLNLIRALRVRFPRSKILVTSAH++PATVA+AMKAGARGFV KSQEL EL+ Sbjct: 101 SLGSNDIDGLNLIRALRVRFPRSKILVTSAHNNPATVALAMKAGARGFVGKSQELGELVQ 160 Query: 123 AIRTIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPR---RRRARNTPPSSDTLSDM 179 AIRT+ GREYL+ AM+REL A+ A+D PE PP+ RR RN+PPSSD+LS+M Sbjct: 161 AIRTVSVGREYLNAAMARELTAMLASD-SPTPAPEGGPPQVRPPRRKRNSPPSSDSLSEM 219 Query: 180 PNLSPREREVLRCCLDGLSVTDIAEKFARSVKTISGQKQSAFRKLGVRSDNELFKIEYQI 239 P+LSPREREVLRCCLDGLSVT IA+KFARSVKTISGQKQSAFRKLGVRSDNELFKIEYQI Sbjct: 220 PSLSPREREVLRCCLDGLSVTAIADKFARSVKTISGQKQSAFRKLGVRSDNELFKIEYQI 279 Query: 240 KEL 242 K+L Sbjct: 280 KDL 282 >ref|YP_002983011.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] ref|ZP_07675277.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] gb|ACS64339.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] gb|EFP66335.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] Length = 232 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 132/242 (54%), Positives = 170/242 (70%), Gaps = 14/242 (5%) Query: 1 MTWTLASALRIALLDDHAVVRYGLAKRLAEEPDFTVVGAFATSKELMAALR--ASPADLL 58 M WT +R+ +LDDHAVVR+GLA RL +E D V G FA+ +E++ AL+ + D+L Sbjct: 1 MNWTATRPIRVIVLDDHAVVRHGLAARLKQETDIEVSGMFASGREIVQALKDKSLEVDVL 60 Query: 59 LIDYSLGSNDIDGLNLIRALRVRFPRSKILVTSAHSSPATVAMAMKAGARGFVSKSQELA 118 L+DYSLG +IDGLNLIR +RVR+P KILV SAH + ATV M M AGARGFV K ++L+ Sbjct: 61 LMDYSLGPTEIDGLNLIRLIRVRYPDLKILVASAHHNMATVGMVMHAGARGFVGKEEDLS 120 Query: 119 ELILAIRTIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSD 178 EL+ AIRT+ G + L+ A++ E+ + GA S PAP L D Sbjct: 121 ELVRAIRTVAAGGKRLNAALAAEM------ERGALSADAPAPV------TNGTKLSALID 168 Query: 179 MPNLSPREREVLRCCLDGLSVTDIAEKFARSVKTISGQKQSAFRKLGVRSDNELFKIEYQ 238 LSPREREVLRCCLDG+SVTDIAEKFARS+KTIS QKQSA+RKLG+R+D ELFKI+++ Sbjct: 169 RSELSPREREVLRCCLDGMSVTDIAEKFARSIKTISSQKQSAYRKLGIRTDTELFKIKHE 228 Query: 239 IK 240 ++ Sbjct: 229 LE 230 >ref|YP_001900970.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gb|ACD28538.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 232 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 131/242 (54%), Positives = 169/242 (69%), Gaps = 14/242 (5%) Query: 1 MTWTLASALRIALLDDHAVVRYGLAKRLAEEPDFTVVGAFATSKELMAALR--ASPADLL 58 M WT +R+ +LDDHAVVR+GLA RL +E D V G FA+ +E++ AL+ + D+L Sbjct: 1 MNWTATRPIRVIVLDDHAVVRHGLAARLKQEADIEVSGMFASGREIVQALKDKSLEVDVL 60 Query: 59 LIDYSLGSNDIDGLNLIRALRVRFPRSKILVTSAHSSPATVAMAMKAGARGFVSKSQELA 118 L+DYSLG +IDGLNLIR +RVR+P KILV SAH + ATV M M AGARGFV K ++L+ Sbjct: 61 LMDYSLGPTEIDGLNLIRLIRVRYPDLKILVASAHHNMATVGMVMHAGARGFVGKEEDLS 120 Query: 119 ELILAIRTIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSD 178 EL+ AIRT+ G + L+ A++ E+ + A S PAP L D Sbjct: 121 ELVRAIRTVAAGGKRLNAALAAEM------ERDALSADAPAPV------TNGTKLSALID 168 Query: 179 MPNLSPREREVLRCCLDGLSVTDIAEKFARSVKTISGQKQSAFRKLGVRSDNELFKIEYQ 238 LSPREREVLRCCLDG+SVTDIAEKFARS+KTIS QKQSA+RKLG+R+D ELFKI+++ Sbjct: 169 RSELSPREREVLRCCLDGMSVTDIAEKFARSIKTISSQKQSAYRKLGIRTDTELFKIKHE 228 Query: 239 IK 240 ++ Sbjct: 229 LE 230 >ref|ZP_07777236.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gb|EFQ61714.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 233 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 119/241 (49%), Positives = 155/241 (64%), Gaps = 9/241 (3%) Query: 1 MTWTLASALRIALLDDHAVVRYGLAKRLAEEPDFTVVGAFATSKELMAALRASPADLLLI 60 M W++ S L+IALLDDHA++R L RL E DF VVG ++ +L+ ALR P DLL++ Sbjct: 1 MRWSVVSPLKIALLDDHALIREALGVRLNAESDFNVVGIYSQGSQLLQALREQPIDLLML 60 Query: 61 DYSLGSNDIDGLNLIRALRVRFPRSKILVTSAHSSPATVAMAMKAGARGFVSKSQELAEL 120 DY LG ++DGL LI+ LR + +IL+ S+ PATV MA++AGA GF KSQ+ +L Sbjct: 61 DYQLGDEELDGLRLIQMLRSLYSSLRILIVSSIERPATVNMAIRAGANGFFGKSQDTEQL 120 Query: 121 ILAIRTIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMP 180 + AIR + R YLS AM+ L + A P+P PP+ D L D P Sbjct: 121 VRAIRAVAMDRLYLSPAMAAALDSTPKA---------PSPSTAPAEGEAPPTIDPLIDYP 171 Query: 181 NLSPREREVLRCCLDGLSVTDIAEKFARSVKTISGQKQSAFRKLGVRSDNELFKIEYQIK 240 LSP+EREVLRCCL+G+SV+ IA KF RS KTISGQKQ+A RKL V SD ELFK+ I+ Sbjct: 172 ALSPKEREVLRCCLEGMSVSQIAIKFLRSRKTISGQKQAAMRKLNVTSDAELFKLHRHIQ 231 Query: 241 E 241 + Sbjct: 232 D 232 >ref|NP_902071.1| transcription regulator [Chromobacterium violaceum ATCC 12472] gb|AAQ60073.2| capsula synthesis response regulator transcription regulator protein [Chromobacterium violaceum ATCC 12472] Length = 231 Score = 205 bits (521), Expect = 5e-51, Method: Composition-based stats. Identities = 123/229 (53%), Positives = 159/229 (69%), Gaps = 20/229 (8%) Query: 8 ALRIALLDDHAVVRYGLAKRLAEEPDFTVVGAFATSKELMAALR--ASP-ADLLLIDYSL 64 A+R+ LLDDH +V +GL L PD ++ G+F++S +LM L A+P AD+ +IDY+L Sbjct: 11 AIRVILLDDHLMVLHGLGSHLENVPDISLTGSFSSSGQLMRTLAGAAAPLADVAVIDYAL 70 Query: 65 GSNDIDGLNLIRALRVRFPRSKILVTSAHSSPATVAMAMKAGARGFVSKSQELAELILAI 124 +D+DGLNLIRA+R+RFP +ILV SA+ +PATVA+AM+ GA GF+ K Q ++ELILAI Sbjct: 71 RPDDVDGLNLIRAMRIRFPWLRILVMSAYYTPATVALAMRGGAHGFIGKEQGMSELILAI 130 Query: 125 RTIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSP 184 R + G+ YLS M RE Q+ G S P A P L D P+LSP Sbjct: 131 RRLAAGQTYLSEDM-REAMPQQS---GEASIPSDALP-------------NLLDHPDLSP 173 Query: 185 REREVLRCCLDGLSVTDIAEKFARSVKTISGQKQSAFRKLGVRSDNELF 233 REREVLRCCL GLSV++IA KF+RS+KTIS QKQSA +KLG+RSDNELF Sbjct: 174 REREVLRCCLLGLSVSEIAVKFSRSIKTISNQKQSALKKLGLRSDNELF 222