BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3769.p (235 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776522.1| sensor histidine kinase [Herbaspirillum sero... 250 1e-64 ref|YP_001898342.1| multi-sensor hybrid histidine kinase [Ralsto... 128 6e-28 ref|NP_902070.1| sensor protein evgS [Chromobacterium violaceum ... 124 1e-26 ref|YP_002980802.1| Hpt sensor hybrid histidine kinase [Ralstoni... 120 1e-25 ref|YP_001892351.1| multi-sensor hybrid histidine kinase [Ralsto... 120 2e-25 >ref|YP_003776522.1| sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64614.1| sensor histidine kinase (domains REC and Hpt) protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 250 bits (638), Expect = 1e-64, Method: Composition-based stats. Identities = 152/230 (66%), Positives = 181/230 (78%) Query: 3 MKDSGPRVLLVDDSATIRYAMQNRLQRLGCQVDCVADGGSALAAIRARPYGLVLLDCFLP 62 M S PRVLLVDDSATIRYAMQNRLQ LGCQV ADG +ALAAIRA+P GLVLLDCFLP Sbjct: 1 MNRSEPRVLLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLP 60 Query: 63 DIPGQEVARQVRQLEQTQRQRPYTPLIGISAETDALHVQRCLDSGMDGMLPKPLQTQAIR 122 D+PG EVARQVR LEQ QRPYTPLIGISAE DA HV+ CLD GMDGML KP+QT +R Sbjct: 61 DLPGHEVARQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLR 120 Query: 123 RLLALWCDLDNEEDGQAMTPEQEYGQDLDRLFLQTTRNDLAALEQASLQGDRGRMVQLAH 182 ++L+LWCD + ++G A+ P +EY +DL RLFL T+++DLAAL+QA GD+ M +LAH Sbjct: 121 KMLSLWCDHECGDEGAALPPREEYARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAH 180 Query: 183 RMKGAALTMGRLELVALLDCVEEALRAEADERQAIGLLLQSLSSALQARS 232 RMKGAALTM R E+VALL+C+EEA++ + D + AI LLL SL L A + Sbjct: 181 RMKGAALTMQRSEIVALLECLEEAMQDDYDTQDAISLLLSSLEKVLAASA 230 >ref|YP_001898342.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gb|ACD25910.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] Length = 818 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 126/227 (55%), Gaps = 5/227 (2%) Query: 5 DSGPRVLLVDDSATIRYAMQNRLQRLGCQVDCVADGGSALAAIRARPYGLVLLDCFLPDI 64 + GP VL+VDD +++A+Q++L L C+ G +AL + + +VLLDC LP I Sbjct: 587 EEGPLVLVVDDHEAVQHAIQHQLDALACRSAIAGTGEAALEQFASASFDMVLLDCNLPGI 646 Query: 65 PGQEVARQVRQLEQTQRQRPYTPLIGISAETDALHVQRCLDSGMDGMLPKPLQTQAIRRL 124 G VA+++R++E+ QR TP++ ISA TD H RC DSGMDG+L KPL+ A+R L Sbjct: 647 DGYTVAQRMREIER-QRAGERTPIVAISAATDDAHRIRCFDSGMDGVLGKPLRLAALREL 705 Query: 125 LALWCDL-DNEEDGQAMTPEQEYGQDLDRLFLQTTRNDLAALEQASLQGDRGRMVQLAHR 183 + LWC D+ + + M + D+ ++ QT + DL L Q + D + + AHR Sbjct: 706 IELWCAHGDSARNAEPMEHDLAPSSDVLAIYRQTMKTDLEMLSQGIARRDIEQARRAAHR 765 Query: 184 MKGAALTMGRLELVALLDCVEEALRAEADERQAIGLLLQSLSSALQA 230 + GAA +E + + E R +D I +Q+L ALQ+ Sbjct: 766 ISGAAAV---VEDLPTRNLARELERRLSDSFSDINAEIQALLVALQS 809 >ref|NP_902070.1| sensor protein evgS [Chromobacterium violaceum ATCC 12472] gb|AAQ60072.1| sensor protein evgS precursor [Chromobacterium violaceum ATCC 12472] Length = 787 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 123/220 (55%), Gaps = 5/220 (2%) Query: 10 VLLVDDSATIRYAMQNRLQRLGCQVDCVADGGSALAAI-RARPYGLVLLDCFLPDIPGQE 68 +L+V+D R+ + +L+ LG + D +ALA + + + +VLLDC LP I G E Sbjct: 564 ILVVEDQPANRFVIGQQLETLGFRSVMAEDAPAALALLDQGGRFSMVLLDCNLPGIDGYE 623 Query: 69 VARQVRQLEQTQRQRPYTPLIGISAETDALHVQRCLDSGMDGMLPKPLQTQAIRRLLALW 128 +AR++RQ Q Q PY P++ ISA T H QRCL+SGMD L KPLQ + +LALW Sbjct: 624 LARRLRQHPALQWQ-PYLPIVAISATTGIEHQQRCLESGMDSCLSKPLQLAQLENILALW 682 Query: 129 CDLDNEEDGQAMTPEQEYGQDLDRLFLQTTRNDLAALEQASLQGDRGRMVQLAHRMKGAA 188 LD+ G+ +G+ D +F ++ D++ A QGD + AHR+ GAA Sbjct: 683 --LDHHPAGEVHESAAIHGESFDAVFRRSAGEDVSRFGLALSQGDWKQADHYAHRLHGAA 740 Query: 189 LTMGRLELVALLDCVEEALRAEADERQAIGLLLQSLSSAL 228 L+ GR EL A + ++ ALR +A QA+ LQ + L Sbjct: 741 LSAGRSELAATAERMQNALR-DAQPDQALLRALQEEADCL 779 >ref|YP_002980802.1| Hpt sensor hybrid histidine kinase [Ralstonia pickettii 12D] gb|ACS62130.1| Hpt sensor hybrid histidine kinase [Ralstonia pickettii 12D] Length = 812 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 73/192 (38%), Positives = 110/192 (57%), Gaps = 4/192 (2%) Query: 5 DSGPRVLLVDDSATIRYAMQNRLQRLGCQVDCVADGGSALAAIRARPYGLVLLDCFLPDI 64 + GP VL+VDD +++A+Q++L+ LGC+ G +AL + + +VLLDC LP I Sbjct: 581 EEGPLVLVVDDHEAVQHAIQHQLEALGCRSAIAGTGEAALEQFASAAFDMVLLDCNLPGI 640 Query: 65 PGQEVARQVRQLEQTQRQRPYTPLIGISAETDALHVQRCLDSGMDGMLPKPLQTQAIRRL 124 G VA+++R +E QR TP++ ISA T H RC DSGMDG+L KPL+ A+R L Sbjct: 641 DGYTVAQRMRNIEH-QRGGERTPIVAISAVTGDTHRVRCFDSGMDGVLSKPLRLAALREL 699 Query: 125 LALWCDLDNEEDGQAMTPEQEYGQDLDRL--FLQTTRNDLAALEQASLQGDRGRMVQLAH 182 +ALWC + + + E+E +D L + +T + DL L Q + + + AH Sbjct: 700 IALWCG-HGDSGSRTVQAERETESTVDVLAIYRETMKTDLEMLAQGLADRNIEQARRAAH 758 Query: 183 RMKGAALTMGRL 194 R+ GAA + L Sbjct: 759 RISGAAAVVDDL 770 >ref|YP_001892351.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] ref|YP_002983850.1| Hpt sensor hybrid histidine kinase [Ralstonia pickettii 12D] gb|ACD28924.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J] gb|ACS65178.1| Hpt sensor hybrid histidine kinase [Ralstonia pickettii 12D] Length = 808 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 121/228 (53%), Gaps = 3/228 (1%) Query: 7 GPRVLLVDDSATIRYAMQNRLQRLGCQVDCVADGGSALAAIRARPYGLVLLDCFLPDIPG 66 GP +L+VDD +++A+Q++L LGC+ G +AL R + +VLLDC LP I G Sbjct: 577 GPLILVVDDHEAVQHAIQHQLDALGCRTAIAVTGEAALEQFRPSAFDMVLLDCDLPGIDG 636 Query: 67 QEVARQVRQLEQTQRQRPYTPLIGISAETDALHVQRCLDSGMDGMLPKPLQTQAIRRLLA 126 VA+++R +EQ Q QR TP+I ISA TD H RC DSGMDG+L KPL+ A+R ++ Sbjct: 637 YTVAQRMRNMEQQQGQR--TPIIAISASTDDTHRVRCFDSGMDGVLAKPLRLAALREMID 694 Query: 127 LWCDLDNEEDGQAMTPEQEYGQDLDRLFLQTTRNDLAALEQASLQGDRGRMVQLAHRMKG 186 LWC N + E L ++ ++ DL +L + D + AHR+ G Sbjct: 695 LWCAHGNAVPSATPSSEAVASAALLAIYQESMTADLKSLAHGVMTRDIAQARHAAHRIAG 754 Query: 187 AALTMGRLELVALLDCVEEALRAEADERQA-IGLLLQSLSSALQARSL 233 AA + RL L +E L A + E + LL L SA A L Sbjct: 755 AAAVVDRLRTRDLAAELERRLSAPSGEVTPDVHALLAELQSAHAADML 802