BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3766.p (366 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776518.1| nitrogen regulation (sensor histidine kinase... 673 0.0 gb|AAC32390.3| histidine kinase [Herbaspirillum seropedicae] 640 0.0 ref|YP_001099260.1| two-component system sensory histidine kinas... 563 e-158 ref|YP_001352770.1| nitrogen regulation (sensor protein kinase) ... 549 e-154 ref|YP_004754184.1| nitrogen regulation protein NR(II) [Collimon... 549 e-154 >ref|YP_003776518.1| nitrogen regulation (sensor histidine kinase) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64610.1| nitrogen regulation (sensor histidine kinase) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 366 Score = 673 bits (1737), Expect = 0.0, Method: Composition-based stats. Identities = 350/366 (95%), Positives = 357/366 (97%) Query: 1 MNPGLTHSTMKTALPSLDGLDLLASAVIILDANGGIVYANAAAENLLESSFKVLSQQKLS 60 MNPG + MKT PSL+GLDLLASAVIILDA GGIVYANAAAENLLESSFKVLSQQKLS Sbjct: 1 MNPGSPTTAMKTPFPSLEGLDLLASAVIILDAEGGIVYANAAAENLLESSFKVLSQQKLS 60 Query: 61 ELFLNGKELTALFYQAIEHQFADKRLDLVLERANREPLQVHTIVTPLDSTDWPVLLELRE 120 ELFLNGKEL+ALFYQAIEHQFADKRLDLVLERANREPLQVHTIVTPLD+ D PVLLELRE Sbjct: 61 ELFLNGKELSALFYQAIEHQFADKRLDLVLERANREPLQVHTIVTPLDNPDMPVLLELRE 120 Query: 121 NVQQLKLDREERMFDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREY 180 NVQQLKLDREER+FDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREY Sbjct: 121 NVQQLKLDREERIFDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREY 180 Query: 181 TQVIIKEADRLQTLVDRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGLSIKRDYDL 240 TQVIIKEADRLQTLVDRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGL+IKRDYDL Sbjct: 181 TQVIIKEADRLQTLVDRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGLTIKRDYDL 240 Query: 241 SIPEFRGDKEQLIQAVLNIVHNAAQALADRIRAGDGELILRTRVSRQVTLSKVRYRLALD 300 SIPEFRGDKEQLIQAVLNIVHNAAQALADRIRAGDGELILRTRVSRQVTLSKVRYRLALD Sbjct: 241 SIPEFRGDKEQLIQAVLNIVHNAAQALADRIRAGDGELILRTRVSRQVTLSKVRYRLALD 300 Query: 301 LHIIDNGPGIPPDIQERIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFR 360 LHIIDNGPGIPPDIQ+RIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFR Sbjct: 301 LHIIDNGPGIPPDIQDRIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFR 360 Query: 361 ILIPLP 366 ILIPLP Sbjct: 361 ILIPLP 366 >gb|AAC32390.3| histidine kinase [Herbaspirillum seropedicae] Length = 364 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 337/366 (92%), Positives = 348/366 (95%), Gaps = 2/366 (0%) Query: 1 MNPGLTHSTMKTALPSLDGLDLLASAVIILDANGGIVYANAAAENLLESSFKVLSQQKLS 60 MNPG + MKT PSL+GLDLLA ++ + GGIVYANAAA +SSFKVLSQQKLS Sbjct: 1 MNPGSPTTAMKTPFPSLEGLDLLALIILDAE--GGIVYANAAARTCWKSSFKVLSQQKLS 58 Query: 61 ELFLNGKELTALFYQAIEHQFADKRLDLVLERANREPLQVHTIVTPLDSTDWPVLLELRE 120 ELFLNGKEL+ALFYQAIEHQFADKRLDLVLERANREPLQVHTIVTPLD+ D PVLLELRE Sbjct: 59 ELFLNGKELSALFYQAIEHQFADKRLDLVLERANREPLQVHTIVTPLDNPDMPVLLELRE 118 Query: 121 NVQQLKLDREERMFDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREY 180 NVQQLKLDREER+FDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREY Sbjct: 119 NVQQLKLDREERIFDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREY 178 Query: 181 TQVIIKEADRLQTLVDRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGLSIKRDYDL 240 TQVIIKEADRLQTLVDRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGL+IKRDYDL Sbjct: 179 TQVIIKEADRLQTLVDRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGLTIKRDYDL 238 Query: 241 SIPEFRGDKEQLIQAVLNIVHNAAQALADRIRAGDGELILRTRVSRQVTLSKVRYRLALD 300 SIPEFRGDKEQLIQAVLNIVHNAAQALADRIRAGDGELILRTRVSRQVTLSKVRYRLALD Sbjct: 239 SIPEFRGDKEQLIQAVLNIVHNAAQALADRIRAGDGELILRTRVSRQVTLSKVRYRLALD 298 Query: 301 LHIIDNGPGIPPDIQERIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFR 360 LHIIDNGPGIPPDIQ+RIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFR Sbjct: 299 LHIIDNGPGIPPDIQDRIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFR 358 Query: 361 ILIPLP 366 ILIPLP Sbjct: 359 ILIPLP 364 >ref|YP_001099260.1| two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] emb|CAL61133.1| Nitrogen regulation protein NR(II) [Herminiimonas arsenicoxydans] Length = 357 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 289/357 (80%), Positives = 319/357 (89%) Query: 10 MKTALPSLDGLDLLASAVIILDANGGIVYANAAAENLLESSFKVLSQQKLSELFLNGKEL 69 MK S GLDLLASAV++L ++G I YAN AAENLLE+S KVL+ +L+ELFLN EL Sbjct: 1 MKKPSISFGGLDLLASAVLVLRSDGYIAYANPAAENLLENSNKVLATHRLNELFLNADEL 60 Query: 70 TALFYQAIEHQFADKRLDLVLERANREPLQVHTIVTPLDSTDWPVLLELRENVQQLKLDR 129 +F QA+EHQFADKR DL LER REPLQVH +VT LD+ D PVL+ELRENVQQLKLDR Sbjct: 61 DVVFQQAVEHQFADKRQDLTLERMGREPLQVHMVVTALDNPDLPVLMELRENVQQLKLDR 120 Query: 130 EERMFDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEAD 189 EER+ DQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERH+KELREYTQVIIKEAD Sbjct: 121 EERLIDQSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHVKELREYTQVIIKEAD 180 Query: 190 RLQTLVDRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGLSIKRDYDLSIPEFRGDK 249 RLQTLVDRLLAPHR HIVGDVNIHEVCERVRSL++AEFP GL I+RDYDLSIPEFRGDK Sbjct: 181 RLQTLVDRLLAPHRSLHIVGDVNIHEVCERVRSLIVAEFPSGLKIRRDYDLSIPEFRGDK 240 Query: 250 EQLIQAVLNIVHNAAQALADRIRAGDGELILRTRVSRQVTLSKVRYRLALDLHIIDNGPG 309 EQLIQAVLNI HNAAQ L+ I++GD E++LRTR++R VTL+KVRYRLALDLHIIDNGPG Sbjct: 241 EQLIQAVLNIAHNAAQVLSSHIKSGDAEIVLRTRIARNVTLAKVRYRLALDLHIIDNGPG 300 Query: 310 IPPDIQERIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFRILIPLP 366 IPPDIQ+RIFYPLVSGR+GGSGLGLTLAQTFV QHMG+IEC+SRPGCTDFRILIPLP Sbjct: 301 IPPDIQDRIFYPLVSGRDGGSGLGLTLAQTFVQQHMGLIECESRPGCTDFRILIPLP 357 >ref|YP_001352770.1| nitrogen regulation (sensor protein kinase) transcription regulator [Janthinobacterium sp. Marseille] gb|ABR89080.1| nitrogen regulation (sensor protein kinase) transcription regulator [Janthinobacterium sp. Marseille] Length = 345 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 280/345 (81%), Positives = 313/345 (90%) Query: 22 LLASAVIILDANGGIVYANAAAENLLESSFKVLSQQKLSELFLNGKELTALFYQAIEHQF 81 +LASAV++L + I YAN AAE LLESS K L+ KL+ELF+N +EL +F +A+EHQF Sbjct: 1 MLASAVLVLRPDSDIAYANPAAEILLESSSKALTNHKLNELFINCEELEQVFQEALEHQF 60 Query: 82 ADKRLDLVLERANREPLQVHTIVTPLDSTDWPVLLELRENVQQLKLDREERMFDQSQANK 141 ADKRLDLVLER R+PLQVH +V+ LDS + PVL+ELRENVQQLKLDREER+ DQSQANK Sbjct: 61 ADKRLDLVLERHGRDPLQVHVVVSALDSAETPVLIELRENVQQLKLDREERLIDQSQANK 120 Query: 142 ELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEADRLQTLVDRLLAP 201 ELIRNLAHEIKNPLGGIRGAAQLLE+ELPERHLKE REYTQVIIKEADRLQTLVDRLLAP Sbjct: 121 ELIRNLAHEIKNPLGGIRGAAQLLEMELPERHLKEFREYTQVIIKEADRLQTLVDRLLAP 180 Query: 202 HRHPHIVGDVNIHEVCERVRSLVMAEFPQGLSIKRDYDLSIPEFRGDKEQLIQAVLNIVH 261 HR PHIVGDVNIHEVCERVRSL+++EFP GL IKRDYDLS+PEFRGDKEQLIQAVLNI H Sbjct: 181 HRSPHIVGDVNIHEVCERVRSLIVSEFPNGLKIKRDYDLSVPEFRGDKEQLIQAVLNIAH 240 Query: 262 NAAQALADRIRAGDGELILRTRVSRQVTLSKVRYRLALDLHIIDNGPGIPPDIQERIFYP 321 NAAQ L+ R++AGD EL LRTR++RQVTL+KVRYRLALDLHIIDNGPGIPPDI++RIFYP Sbjct: 241 NAAQVLSARMKAGDAELTLRTRIARQVTLAKVRYRLALDLHIIDNGPGIPPDIRDRIFYP 300 Query: 322 LVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFRILIPLP 366 LVSGR+GGSGLGLTLAQTFV QHMG+IEC+SRPGCTDFRILIPLP Sbjct: 301 LVSGRDGGSGLGLTLAQTFVQQHMGLIECESRPGCTDFRILIPLP 345 >ref|YP_004754184.1| nitrogen regulation protein NR(II) [Collimonas fungivorans Ter331] gb|AEK63361.1| Nitrogen regulation protein NR(II) [Collimonas fungivorans Ter331] Length = 427 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 283/351 (80%), Positives = 316/351 (90%) Query: 16 SLDGLDLLASAVIILDANGGIVYANAAAENLLESSFKVLSQQKLSELFLNGKELTALFYQ 75 +L LDLLASAV++LD +G +V+ANAAAENLLESS ++L QQ LS+LFLN +L A+F Q Sbjct: 77 ALASLDLLASAVLVLDQHGRLVFANAAAENLLESSSRLLQQQTLSDLFLNPDQLLAIFEQ 136 Query: 76 AIEHQFADKRLDLVLERANREPLQVHTIVTPLDSTDWPVLLELRENVQQLKLDREERMFD 135 A++HQF D R DL+LER REPL V TIVT LD+ D PVL+ELRENVQQLKL+REER+ D Sbjct: 137 ALQHQFDDSRQDLILERVGREPLWVDTIVTALDNPDMPVLIELRENVQQLKLEREERLID 196 Query: 136 QSQANKELIRNLAHEIKNPLGGIRGAAQLLELELPERHLKELREYTQVIIKEADRLQTLV 195 QSQ NKELIRNLAHEIKNPLGGIRGAAQLLELELPERH+KELREYTQVIIKEADRLQTLV Sbjct: 197 QSQVNKELIRNLAHEIKNPLGGIRGAAQLLELELPERHVKELREYTQVIIKEADRLQTLV 256 Query: 196 DRLLAPHRHPHIVGDVNIHEVCERVRSLVMAEFPQGLSIKRDYDLSIPEFRGDKEQLIQA 255 DRLLAPHR IVGDVNIHEVCERVRSL++AEFP GLSIKRDYDLSIP+FRGDKEQLIQA Sbjct: 257 DRLLAPHRLAQIVGDVNIHEVCERVRSLIVAEFPSGLSIKRDYDLSIPQFRGDKEQLIQA 316 Query: 256 VLNIVHNAAQALADRIRAGDGELILRTRVSRQVTLSKVRYRLALDLHIIDNGPGIPPDIQ 315 +LNI HNAAQAL +RI+AGD EL+ ++R+ RQVTL+KVRYRLALDLHIIDNGPGIP +IQ Sbjct: 317 ILNIAHNAAQALQERIKAGDAELVFQSRIVRQVTLAKVRYRLALDLHIIDNGPGIPAEIQ 376 Query: 316 ERIFYPLVSGREGGSGLGLTLAQTFVHQHMGVIECDSRPGCTDFRILIPLP 366 ERIFYPLVSGR+GGSGLGLTLAQTFV QHMGVIEC+SRPG TDFRILIPLP Sbjct: 377 ERIFYPLVSGRDGGSGLGLTLAQTFVQQHMGVIECESRPGYTDFRILIPLP 427