BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3764.p (499 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC32391.2| transcriptional activator NtrC [Herbaspirillum se... 862 0.0 ref|YP_003776517.1| nitrogen assimilation transcription activato... 856 0.0 emb|CAL61134.2| Nitrogen regulation protein NR(I) [Herminiimonas... 786 0.0 ref|ZP_08273339.1| Nitrogen regulation protein NR(I) [Oxalobacte... 764 0.0 ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinob... 754 0.0 >gb|AAC32391.2| transcriptional activator NtrC [Herbaspirillum seropedicae] Length = 500 Score = 862 bits (2226), Expect = 0.0, Method: Composition-based stats. Identities = 459/500 (91%), Positives = 472/500 (94%), Gaps = 1/500 (0%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASG 60 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDA+AALQNGTPQVLVSDIRMPGASG Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAIAALQNGTPQVLVSDIRMPGASG 60 Query: 61 LELLQTIKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 LELLQT+KAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES Sbjct: 61 LELLQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 Query: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH Sbjct: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 Query: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM Sbjct: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI Sbjct: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC Sbjct: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEVKDLPQDLIEERSSNFQPTHTHTHTTSSAAPAEARGGAGGGA-SYDS 419 NWITVMAPGQTVE+KDLPQDL+EER QP + +P++ A G S + Sbjct: 361 NWITVMAPGQTVEIKDLPQDLVEERVHAPQPAQNRGCSGIGGSPSDGLYRACPGVASASA 420 Query: 420 DGGAERSWISLLETEAAQMLAEERPEVMDILGRQFEAALIKIALKHTHGRKNDAAVRLGI 479 DG A SWI+LLETEAAQMLA E+PEVMDILGRQFEAALIK+ALKHTHGRKNDAAVRLGI Sbjct: 421 DGAAGASWITLLETEAAQMLASEQPEVMDILGRQFEAALIKVALKHTHGRKNDAAVRLGI 480 Query: 480 GRNTITRKIQELGIGGAEDD 499 GRNTITRKIQ+LGIGGAEDD Sbjct: 481 GRNTITRKIQKLGIGGAEDD 500 >ref|YP_003776517.1| nitrogen assimilation transcription activator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64609.1| nitrogen assimilation transcription activator protein [Herbaspirillum seropedicae SmR1] Length = 500 Score = 856 bits (2212), Expect = 0.0, Method: Composition-based stats. Identities = 463/500 (92%), Positives = 474/500 (94%), Gaps = 1/500 (0%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASG 60 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDA+AALQNGTPQVLVSDIRMPGASG Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAIAALQNGTPQVLVSDIRMPGASG 60 Query: 61 LELLQTIKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 LELLQT+KAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES Sbjct: 61 LELLQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 Query: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH Sbjct: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 Query: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM Sbjct: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI Sbjct: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC Sbjct: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEVKDLPQDLIEERSSNFQPTHT-HTHTTSSAAPAEARGGAGGGASYDS 419 NWITVMAPGQTVE+KDLPQDL+EER QP T +++A P A G AS + Sbjct: 361 NWITVMAPGQTVEIKDLPQDLVEERVHAPQPAQTVAAPASAAALPTAYTEPAPGVASASA 420 Query: 420 DGGAERSWISLLETEAAQMLAEERPEVMDILGRQFEAALIKIALKHTHGRKNDAAVRLGI 479 DG A SWI+LLETEAAQMLA E+PEVMDILGRQFEAALIK+ALKHTHGRKNDAAVRLGI Sbjct: 421 DGAAGASWITLLETEAAQMLASEQPEVMDILGRQFEAALIKVALKHTHGRKNDAAVRLGI 480 Query: 480 GRNTITRKIQELGIGGAEDD 499 GRNTITRKIQELGIGGAEDD Sbjct: 481 GRNTITRKIQELGIGGAEDD 500 >emb|CAL61134.2| Nitrogen regulation protein NR(I) [Herminiimonas arsenicoxydans] Length = 510 Score = 786 bits (2030), Expect = 0.0, Method: Composition-based stats. Identities = 418/510 (81%), Positives = 447/510 (87%), Gaps = 11/510 (2%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASG 60 MKPIWIVDDDESIRWVLEKALARENLATQSFS+ARDAM AL+ G PQVLVSDIRMPG +G Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSNARDAMEALKTGAPQVLVSDIRMPGETG 60 Query: 61 LELLQTIKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 LELLQ +KAKHPG+PVIIITAFSDLDSAV+AFQGGAFEYLAKPFD+DKAVELIRRAL+ES Sbjct: 61 LELLQAVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDIDKAVELIRRALEES 120 Query: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRET IEQ +A+TPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH Sbjct: 121 LRETSIEQVSAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 Query: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRASQPF+ALNTAAIPKDLLESELFGHERGAFTGAQA RRGRFEQA+GGTLFLDEIGDM Sbjct: 181 SPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQASRRGRFEQADGGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 P DLQTRLLRVLSDGHFYRVGGHQ LKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI Sbjct: 241 PFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 RLRLPSLRER EDIPIL R+FLAQSA+QLGVE KR+S AMQFL+ LE PGNVRQLENLC Sbjct: 301 RLRLPSLRERREDIPILTRHFLAQSAKQLGVEVKRMSDGAMQFLTNLELPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEVKDLPQDLIEER--SSNFQPTHTHTHTTSSAAP---AEARGGAGGGA 415 NWITVMAPGQTVE KDLP +L E + S++ Q H S P A GG + Sbjct: 361 NWITVMAPGQTVEAKDLPHELTEGQAFSASGQAGANAVHGISYTTPESDAMTLGGMTQTS 420 Query: 416 SYDSDGGA------ERSWISLLETEAAQMLAEERPEVMDILGRQFEAALIKIALKHTHGR 469 S+ + GGA SWI+LLE EAA +LA +PEVMD LGRQFE+ LIK+ALKHTHGR Sbjct: 421 SFPNAGGAASAPLESSSWIALLEMEAASLLAAGKPEVMDALGRQFESTLIKMALKHTHGR 480 Query: 470 KNDAAVRLGIGRNTITRKIQELGIGGAEDD 499 KNDAAVRLGIGRNTITRKI ELGI GA+DD Sbjct: 481 KNDAAVRLGIGRNTITRKIHELGIDGAKDD 510 >ref|ZP_08273339.1| Nitrogen regulation protein NR(I) [Oxalobacteraceae bacterium IMCC9480] gb|EGF33190.1| Nitrogen regulation protein NR(I) [Oxalobacteraceae bacterium IMCC9480] Length = 499 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 405/503 (80%), Positives = 438/503 (87%), Gaps = 8/503 (1%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASG 60 MKPIWIVDDDESIRWVLEKALARENLAT+SFS+ARDA ALQ+ TPQVLVSDIRMPG SG Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATRSFSNARDANDALQHDTPQVLVSDIRMPGGSG 60 Query: 61 LELLQTIKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 LELLQT+K K+PG+PVIIITAFSDLDSAV+AFQGGAFEYLAKPFD++KAVELIRRALDES Sbjct: 61 LELLQTVKTKYPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDLEKAVELIRRALDES 120 Query: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRE +EQ A+TPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESG+GKELVARALHKH Sbjct: 121 LREASVEQAPAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGTGKELVARALHKH 180 Query: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRA+QPF+ALNTAAIPKDLLESELFGHERGAFTGAQA RRGRFEQAE GTLFLDEIGDM Sbjct: 181 SPRAAQPFIALNTAAIPKDLLESELFGHERGAFTGAQASRRGRFEQAENGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 P DLQTRLLRVLSDGHFYRVGGHQ +KANVRVIAATHQNLEQRVREGLFREDLYHRLNVI Sbjct: 241 PFDLQTRLLRVLSDGHFYRVGGHQPMKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 RLRLPSLRER EDIPIL RYFL QSA+QLG +AKR++ AMQFL+ L+ PGNVRQLENLC Sbjct: 301 RLRLPSLRERREDIPILTRYFLTQSAKQLGGDAKRMTDGAMQFLTGLDLPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEVKDLPQDLIEERSSNFQPTHTHTHTTSSAAPAEARGGAGGGASYDSD 420 NWITVMAPGQ+VEVKDLP+DLI+ S T S PA GAG S Sbjct: 361 NWITVMAPGQSVEVKDLPRDLIDGGSF----AAIATPQASVMTPASMPEGAGVVTQATSA 416 Query: 421 GGAE----RSWISLLETEAAQMLAEERPEVMDILGRQFEAALIKIALKHTHGRKNDAAVR 476 AE +W+ LLE EAA+MLA +P+VM LGR FE+ALIK ALKHTHGRKNDAA+R Sbjct: 417 PVAEAVDPETWVDLLEAEAARMLAAGQPDVMGTLGRLFESALIKTALKHTHGRKNDAAIR 476 Query: 477 LGIGRNTITRKIQELGIGGAEDD 499 LGIGRNTITRKIQELGI GA+D+ Sbjct: 477 LGIGRNTITRKIQELGIDGAKDE 499 >ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] gb|ABR89175.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 754 bits (1946), Expect = 0.0, Method: Composition-based stats. Identities = 411/509 (80%), Positives = 440/509 (86%), Gaps = 13/509 (2%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASG 60 MKPIWIVDDDESIRWVLEKALARENLAT+SFS+ARDA+ AL+ G PQVLVSDIRMPG SG Sbjct: 1 MKPIWIVDDDESIRWVLEKALARENLATKSFSNARDALEALKTGAPQVLVSDIRMPGESG 60 Query: 61 LELLQTIKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 LELLQ +KAKHPG+PVIIITAFSDLDSAV+AFQGGAFEYLAKPFD+D AV LIRRAL+ES Sbjct: 61 LELLQAVKAKHPGLPVIIITAFSDLDSAVAAFQGGAFEYLAKPFDIDHAVGLIRRALEES 120 Query: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRET +EQ +A+TPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH Sbjct: 121 LRETSVEQVSAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 Query: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRASQPF+ALNTAAIPKDLLESELFGHERGAFTGAQA RRGRFEQAE GTLFLDEIGDM Sbjct: 181 SPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQATRRGRFEQAENGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 P DLQTRLLRVLSDGHFYRVGGHQ LKANVRVIAATHQNLE RVREGLFREDLYHRLNVI Sbjct: 241 PFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 RLRLPSLRER EDIPIL R+FL QSA+QLGVE KR+S AMQFLS LE PGNVRQLENLC Sbjct: 301 RLRLPSLRERREDIPILTRHFLQQSAKQLGVEVKRMSDSAMQFLSSLELPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEVKDLPQDLIEER------SSNF---QP-THTHTHTTSSAAPAEARGG 410 NWITVMAPGQTVE KDLP +L E + S +F QP H++ T +A+P G Sbjct: 361 NWITVMAPGQTVEAKDLPHELTEGQAFAASASGSFPGSQPAAHSYATTDEAASP---NGA 417 Query: 411 AGGGASYDSDGGAERSWISLLETEAAQMLAEERPEVMDILGRQFEAALIKIALKHTHGRK 470 A +WI+LLETEAA +LA +PEVMD LGRQFE+ LIK ALKHTHGRK Sbjct: 418 PPSMAFAAPAPAEPGNWITLLETEAAALLAAGQPEVMDALGRQFESTLIKTALKHTHGRK 477 Query: 471 NDAAVRLGIGRNTITRKIQELGIGGAEDD 499 NDAAVRLGIGRNTITRKI ELGI GA+DD Sbjct: 478 NDAAVRLGIGRNTITRKIHELGIDGAKDD 506