BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3763.p (531 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776516.1| methyl-accepting chemotaxis sensory transduc... 507 e-141 ref|YP_001863552.1| methyl-accepting chemotaxis sensory transduc... 361 2e-97 ref|YP_004751579.1| methyl-accepting chemotaxis sensory transduc... 310 3e-82 ref|YP_004694195.1| methyl-accepting chemotaxis sensory transduc... 310 6e-82 ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I ... 306 7e-81 >ref|YP_003776516.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] gb|ADJ64608.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 531 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 362/517 (70%), Positives = 437/517 (84%) Query: 1 MLGFSVLILFMAVLGAAAWYGLNTVDAQLNEVQTNLMPSVATAKTMQAEIRAFNLAQYRA 60 MLGFS+LILFMA LG + Y + ++AQL +VQ N MPSV TA+TM AE+RA NLAQYRA Sbjct: 1 MLGFSILILFMAALGGTSLYIMGKINAQLVDVQGNWMPSVTTAQTMLAEMRAVNLAQYRA 60 Query: 61 LTANDAQRMQDARTRLTASLGRYTSAADQYRPLIHTPEEQAAYDELQALLPKYLAVSQQM 120 LTA++AQRMQDARTR+TA+LGRYT A++QYR LI +P EQ+AYDELQALL +Y+ + Q+ Sbjct: 61 LTADNAQRMQDARTRITAALGRYTKASEQYRHLISSPAEQSAYDELQALLARYIQIGDQL 120 Query: 121 LAALEQGKQEQAVDIMKDQLFPLRAAMEVQILRLITVNEKGVAEAATSAREAYAGSRMLI 180 ++EQGK+E+A + MKD L+P+R AME +I ++I +N++G A+A + +YA S + I Sbjct: 121 PQSVEQGKEEEAANTMKDTLYPVRTAMEAKIQQIIKINQEGAAQAVEHGQASYAQSHLTI 180 Query: 181 IGLTLASALIGLLIALLISRRLTRQLGGEPAEAMWLSAQIAAGNLTAQLHLRKDDRASLM 240 I TLA+AL GL IALLISRRLTRQLGGEP EAMWLS QIAAGNL A+L L+ +D SLM Sbjct: 181 IAFTLAAALAGLGIALLISRRLTRQLGGEPGEAMWLSGQIAAGNLAARLELKSNDNGSLM 240 Query: 241 HSLMTMREQLAGLVGQIQQASGAIHVAAREIAQGNTDLSQRTEEQAASLEETASSMEQLT 300 SLM MR+QL+GLVGQIQ AS +IHVAA+EIAQGN DLSQRTEEQAASLEETASSME+LT Sbjct: 241 RSLMIMRDQLSGLVGQIQHASTSIHVAAQEIAQGNIDLSQRTEEQAASLEETASSMEELT 300 Query: 301 STVQQNTDHARKASHVASAGADVARRGETEIAQVVSTMREIAVSSHQMSDIISVIEGIAF 360 STVQQN +A++AS +ASAGA+VARRGE EIA VV+TMRE++VSSHQMSDIISVIEGI+F Sbjct: 301 STVQQNAGNAKQASSMASAGAEVARRGEAEIADVVATMREMSVSSHQMSDIISVIEGISF 360 Query: 361 QTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAGAAKEIKGLIEGSVGRIQSGTT 420 QTNILALNAAVEAARAGENGRGFAVVA+EVRALAQRS+ AAKEIK LIE SVGRI++G+ Sbjct: 361 QTNILALNAAVEAARAGENGRGFAVVASEVRALAQRSSAAAKEIKDLIEDSVGRIRNGSQ 420 Query: 421 LVEKAGGTIAEVMRASVDTTRIISDIAHASEEQSAGITQINAAILQMDQVTQQNAALVEQ 480 LVE AG TIAE+M++SV TT ++ +IA ASEEQSAGI Q+N AI+QMDQVTQQNAALVE+ Sbjct: 421 LVEAAGATIAEIMQSSVRTTDLMKEIAAASEEQSAGIGQVNTAIVQMDQVTQQNAALVEE 480 Query: 481 AAAAAQAMMQQAEQLTSAASVFRIDAQLLQAAPLTPA 517 AAAAAQ+MMQQA+ LT+A SVF++D Q L+ P PA Sbjct: 481 AAAAAQSMMQQAQALTAAVSVFKLDDQALRTLPGMPA 517 >ref|YP_001863552.1| methyl-accepting chemotaxis sensory transducer [Burkholderia phymatum STM815] gb|ACC76502.1| methyl-accepting chemotaxis sensory transducer [Burkholderia phymatum STM815] Length = 576 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 251/504 (49%), Positives = 355/504 (70%) Query: 1 MLGFSVLILFMAVLGAAAWYGLNTVDAQLNEVQTNLMPSVATAKTMQAEIRAFNLAQYRA 60 +LGF+ +I+ M LG ++ +A++ E + N +PSV ++ MQA +R + +YRA Sbjct: 14 VLGFAAVIVLMVGLGVFCLIEMSGENARVAEFRDNWLPSVRSSLQMQAGLRQARINEYRA 73 Query: 61 LTANDAQRMQDARTRLTASLGRYTSAADQYRPLIHTPEEQAAYDELQALLPKYLAVSQQM 120 ++ +Q+A R+ A L Y SAA +Y L+ P+E+ AY +Q L+P+Y+ + +Q+ Sbjct: 74 ASSQSPTSVQEAEARIDAGLAEYRSAAAEYEKLVSEPDEKTAYANIQTLMPQYVDLDRQV 133 Query: 121 LAALEQGKQEQAVDIMKDQLFPLRAAMEVQILRLITVNEKGVAEAATSAREAYAGSRMLI 180 GK +A+ ++ Q +R A+E + ++ +N G A +A +AY+ + L Sbjct: 134 RVLARDGKATEAMALLTGQSSTVRDALEKDVRTIVEINVAGAAREGEAASKAYSRTIALA 193 Query: 181 IGLTLASALIGLLIALLISRRLTRQLGGEPAEAMWLSAQIAAGNLTAQLHLRKDDRASLM 240 IG +A+A++ L +AL I+R L RQLGGEP +A L+ QIAAGNL + L+ DR+SLM Sbjct: 194 IGFIMAAAILALGVALFIARGLARQLGGEPRDAASLAGQIAAGNLRIGVPLKAGDRSSLM 253 Query: 241 HSLMTMREQLAGLVGQIQQASGAIHVAAREIAQGNTDLSQRTEEQAASLEETASSMEQLT 300 SL TM++QL +V I+ +S +I VAA EIAQGNTDLSQRTEEQAASLEETASSM++LT Sbjct: 254 FSLGTMKDQLTVIVQGIKTSSESIFVAAGEIAQGNTDLSQRTEEQAASLEETASSMQELT 313 Query: 301 STVQQNTDHARKASHVASAGADVARRGETEIAQVVSTMREIAVSSHQMSDIISVIEGIAF 360 +TV+QN D+A++A+ +A++ + +A+RG + +VV TM I+ SS ++++II VIEGIAF Sbjct: 314 ATVRQNADNAKQATVLATSASAIAQRGGEVVGRVVETMHGISNSSSKVTEIIGVIEGIAF 373 Query: 361 QTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAGAAKEIKGLIEGSVGRIQSGTT 420 QTNILALNAAVEAARAGE GRGFAVVA EVR LAQRSA AAKEIK LI S R+++G+ Sbjct: 374 QTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSATAAKEIKELIGESATRVEAGSR 433 Query: 421 LVEKAGGTIAEVMRASVDTTRIISDIAHASEEQSAGITQINAAILQMDQVTQQNAALVEQ 480 LVE+AGGTI EV+++ T I+ +I+ ASEEQS GI Q+N A+ QMD+VTQQNAALVE+ Sbjct: 434 LVEEAGGTIREVVQSVKRVTDIMGEISSASEEQSTGIEQVNQAVTQMDEVTQQNAALVEE 493 Query: 481 AAAAAQAMMQQAEQLTSAASVFRI 504 A+AAAQ+M QQA L A +VF++ Sbjct: 494 ASAAAQSMAQQARALREAVAVFQV 517 >ref|YP_004751579.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK60756.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 635 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 218/506 (43%), Positives = 325/506 (64%), Gaps = 6/506 (1%) Query: 1 MLGFSVLILFMAVLGAAAWYGLNTVDAQLNEVQTNLMPSVATAKTMQAEIRAFNLAQYRA 60 +L F+++++ VLG A+ L V+A NE+ +N +PSV T+++ + + + Sbjct: 109 LLSFALILMLTLVLGVASITQLGQVNATTNEINSNWLPSVRMLLTLKSNLALLRNVEMQH 168 Query: 61 LTANDAQRMQDARTRLTASLGRYTSAADQYRPLIHTPEEQAAYDELQALLPKYLAVSQQM 120 + +NDA M + + G +Y PL+ + EE+A YD+L+ +P+YL + +++ Sbjct: 169 VMSNDAADMDKSAQFIGDIRGDVQKTLSEYAPLV-SEEERAVYDQLKDKIPRYLEMDKKI 227 Query: 121 LAALEQGKQEQAVDIMKDQLFPLRAAMEVQILRLITVNEKGVAEAATSAREAYAGSRMLI 180 + +++ A+ ++ ++ Q+ RL+ +N G A +A Y +R + Sbjct: 228 VDISRAFRKDDAIKEIRGDSLAAIVELDKQVERLVKINSDGSAASAKDGEAIYNKARFWM 287 Query: 181 IGLTLASALIGLLIALLISRRLTRQLGGEPAEAMWLSAQIAAGNLTAQLHLRK-DDRASL 239 IGL +A L+G +AL I+R + + L A+ ++ ++A G+LTA + +R D+ L Sbjct: 288 IGLMIAMLLLGFALALWIARVVAQPL----EFAVDVARRVAGGDLTADIEVRSSDETGQL 343 Query: 240 MHSLMTMREQLAGLVGQIQQASGAIHVAAREIAQGNTDLSQRTEEQAASLEETASSMEQL 299 M +L M L +VG+++ + I A+ +IA GN +LSQRTE+QA+SLEETA+SMEQL Sbjct: 344 MQALKDMNHSLQKIVGEVRSGTDTIATASGQIAAGNQNLSQRTEQQASSLEETAASMEQL 403 Query: 300 TSTVQQNTDHARKASHVASAGADVARRGETEIAQVVSTMREIAVSSHQMSDIISVIEGIA 359 TSTV+QN D+A +A+ +A + ++VA G T + QVVSTM I SS ++ DII VI+GIA Sbjct: 404 TSTVKQNADNASQANQLAVSASEVALHGGTVVTQVVSTMGAINTSSKKIVDIIGVIDGIA 463 Query: 360 FQTNILALNAAVEAARAGENGRGFAVVATEVRALAQRSAGAAKEIKGLIEGSVGRIQSGT 419 FQTNILALNAAVEAARAGE GRGFAVVA EVR+LAQRSA AAKEIKGLI+ SV ++ GT Sbjct: 464 FQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKGLIDDSVEKVGLGT 523 Query: 420 TLVEKAGGTIAEVMRASVDTTRIISDIAHASEEQSAGITQINAAILQMDQVTQQNAALVE 479 LV++AG T+ E++ + T I+ +I AS+EQ+AGI QIN AI QMDQVTQQNAALVE Sbjct: 524 RLVDQAGSTMEEIVASVRRVTDIMGEITAASQEQTAGIEQINQAISQMDQVTQQNAALVE 583 Query: 480 QAAAAAQAMMQQAEQLTSAASVFRID 505 +AAAAA ++ QA L F+++ Sbjct: 584 EAAAAAASLQDQAGALAGVVGAFKLE 609 >ref|YP_004694195.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp. Is79A3] ref|YP_004695871.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp. Is79A3] gb|AEJ00796.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp. Is79A3] gb|AEJ02472.1| methyl-accepting chemotaxis sensory transducer [Nitrosomonas sp. Is79A3] Length = 578 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 224/501 (44%), Positives = 324/501 (64%) Query: 4 FSVLILFMAVLGAAAWYGLNTVDAQLNEVQTNLMPSVATAKTMQAEIRAFNLAQYRALTA 63 F VL+ FM LG + + LN+++ + +P+ A + F + + + + Sbjct: 15 FMVLLGFMIFLGVFSLFQLNSLNKAATAITGEWLPASKAAADLNLFTSDFRIGEMSHVLS 74 Query: 64 NDAQRMQDARTRLTASLGRYTSAADQYRPLIHTPEEQAAYDELQALLPKYLAVSQQMLAA 123 Q MQ + L R A+++ + LI +PEEQ +D +YLA +Q+++ Sbjct: 75 TSEQDMQHYEKEIANLLSRIEKASEESKRLISSPEEQKIFDLFSERWGQYLAAHRQLISL 134 Query: 124 LEQGKQEQAVDIMKDQLFPLRAAMEVQILRLITVNEKGVAEAATSAREAYAGSRMLIIGL 183 K E+A M Q + M Q+++L +N G A+ A + +A S+ L+I L Sbjct: 135 SRANKTEEARAFMNGQSKQVYDEMSDQLIKLSDLNTAGGIAASEVADQTFAMSQTLVIAL 194 Query: 184 TLASALIGLLIALLISRRLTRQLGGEPAEAMWLSAQIAAGNLTAQLHLRKDDRASLMHSL 243 + IG+++AL+I+R L QLGGEP A + +IAAG+L++ + + S++ ++ Sbjct: 195 LAIAIAIGIVLALVITRNLLAQLGGEPKYAAEVMQKIAAGDLSSNIAVNTKYPNSMLFAI 254 Query: 244 MTMREQLAGLVGQIQQASGAIHVAAREIAQGNTDLSQRTEEQAASLEETASSMEQLTSTV 303 M++ L +V +I+ + I A+ EIA GN DLSQRTEEQA+SLEETASSME+LTSTV Sbjct: 255 KEMQDSLVKIVSEIRSGTDTISTASGEIASGNLDLSQRTEEQASSLEETASSMEELTSTV 314 Query: 304 QQNTDHARKASHVASAGADVARRGETEIAQVVSTMREIAVSSHQMSDIISVIEGIAFQTN 363 +QN D+AR+A+ +A+ ++VA +G + QVV TM I SS ++ DIISVI+GIAFQTN Sbjct: 315 RQNADNARQANQLAAGASEVAVKGGAVVGQVVQTMSSINESSKKIVDIISVIDGIAFQTN 374 Query: 364 ILALNAAVEAARAGENGRGFAVVATEVRALAQRSAGAAKEIKGLIEGSVGRIQSGTTLVE 423 ILALNAAVEAARAGE GRGFAVVATEVR LAQRSA AAKEIK LI SV +++ GT LV+ Sbjct: 375 ILALNAAVEAARAGEQGRGFAVVATEVRTLAQRSAAAAKEIKELISDSVSKVEDGTRLVD 434 Query: 424 KAGGTIAEVMRASVDTTRIISDIAHASEEQSAGITQINAAILQMDQVTQQNAALVEQAAA 483 +AG T+ E++ A T I+++I+ AS+EQS+GI Q+N A+ QMD+VTQQNAALVE+AAA Sbjct: 435 EAGATMDEIVSAVKRVTDIMAEISAASQEQSSGIEQVNQAVTQMDEVTQQNAALVEEAAA 494 Query: 484 AAQAMMQQAEQLTSAASVFRI 504 AA++M +QA+ LT A S F++ Sbjct: 495 AAESMQEQAQTLTQAVSTFKL 515 >ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64222.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 306 bits (784), Expect = 7e-81, Method: Composition-based stats. Identities = 225/514 (43%), Positives = 333/514 (64%), Gaps = 5/514 (0%) Query: 4 FSVLILFMAVLGAAAWYGLNTVDAQLNEVQTNLMPSVATAKTMQAEIRAFNLAQYRALTA 63 F V++ +A LG + L+ V++ E+ TN +PS+ T +Q + + + + A Sbjct: 17 FLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQLAMSRLRSFELQHILA 76 Query: 64 NDAQRMQDARTRLTASLGRYTSAADQYRPLIHTPEEQAAYDELQALLPKYLAVSQQMLAA 123 DA+ ++ + + +A +Y I PEE+A Y E++ L+ +++ +++A Sbjct: 77 KDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVEKLIATFVSEHDKIIAL 136 Query: 124 LEQGKQEQAVDIMKDQLFPLRAAMEVQILRLITVNEKGVAEAATSAREAYAGSRMLIIGL 183 QGK E+A ++ + + QI +L VN+KG + A YA +R+ II Sbjct: 137 SRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNKQADAIYAQARLWIIVT 196 Query: 184 TLASALIGLLIALLISRRLTRQLGGEPAEAMWLSAQIAAGNLTAQLH-LRKDDRASLMHS 242 A + +L+A+ +SR + R L EA+ ++ ++A G+LT ++ KD+ L+ + Sbjct: 197 VAACIGLAMLLAVWVSRLIARPL----EEAVSVAQRVAGGDLTTRIEPAGKDETGQLLVA 252 Query: 243 LMTMREQLAGLVGQIQQASGAIHVAAREIAQGNTDLSQRTEEQAASLEETASSMEQLTST 302 L +M + L G+VGQ++ + I A+ EIA GN DLS RTEEQA+SLEETAS+ME+LTST Sbjct: 253 LKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLEETASAMEELTST 312 Query: 303 VQQNTDHARKASHVASAGADVARRGETEIAQVVSTMREIAVSSHQMSDIISVIEGIAFQT 362 V+QN D+AR+A+ +A + ++VA +G + QVV TM I SS +++DII VI+GIAFQT Sbjct: 313 VKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIADIIGVIDGIAFQT 372 Query: 363 NILALNAAVEAARAGENGRGFAVVATEVRALAQRSAGAAKEIKGLIEGSVGRIQSGTTLV 422 NILALNAAVEAARAGE GRGFAVVA+EVR+LAQRSAGAAKEIK LIEGSV ++ G+ LV Sbjct: 373 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEGSVAQVDMGSKLV 432 Query: 423 EKAGGTIAEVMRASVDTTRIISDIAHASEEQSAGITQINAAILQMDQVTQQNAALVEQAA 482 E+AG T++EV+++ T I+ +I+ AS+EQS GI Q+N AI QMD+VTQQNAALVE+AA Sbjct: 433 ERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVTQQNAALVEEAA 492 Query: 483 AAAQAMMQQAEQLTSAASVFRIDAQLLQAAPLTP 516 AAAQ++ +QAE LT F+++ Q + A P Sbjct: 493 AAAQSLQEQAETLTQTVGFFKLEQQPDEPASRPP 526