BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3762.p (427 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776515.1| proline/betaine transporter protein [Herbasp... 712 0.0 ref|ZP_02882550.1| major facilitator superfamily MFS_1 [Burkhold... 444 e-122 ref|YP_001633504.1| MFS permease [Bordetella petrii DSM 12804] >... 442 e-122 ref|YP_001894351.1| major facilitator superfamily protein [Burkh... 442 e-122 ref|YP_003905721.1| major facilitator superfamily protein [Burkh... 442 e-122 >ref|YP_003776515.1| proline/betaine transporter protein [Herbaspirillum seropedicae SmR1] gb|ADJ64607.1| proline/betaine transporter protein [Herbaspirillum seropedicae SmR1] Length = 427 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 414/427 (96%), Positives = 422/427 (98%) Query: 1 MTSNTAAPGAGTTHPQARRAIISSSIGNALEWFDILIYGAFAVVIAKQFFPTGDDSVSLL 60 M+SNTAAPGA THPQARRAIISSSIGNALEWFDILIYGAFAVVIAKQFFPTGDDSVSLL Sbjct: 1 MSSNTAAPGADITHPQARRAIISSSIGNALEWFDILIYGAFAVVIAKQFFPTGDDSVSLL 60 Query: 61 LTFATFGVSFFMRPLGAVVLGAYSDRAGRKAALMLSIMLMTVGTAMIAFMPSYATIGLLA 120 LTFATFGVSFFMRPLGAVVLGAYSDRAGRKAALMLSIMLMTVGTAMIAFMPSYA+IGLLA Sbjct: 61 LTFATFGVSFFMRPLGAVVLGAYSDRAGRKAALMLSIMLMTVGTAMIAFMPSYASIGLLA 120 Query: 121 PAGIALGKMIQGFSAGGEFGSSTAFLVEHAPHRRGFFSSWQVASQGISLLLAAIFGAVLN 180 PAGIALGKMIQGFSAGGEFGSSTAFLVEHAPHRRGFFSSWQVASQGISLLLAA+FGAVLN Sbjct: 121 PAGIALGKMIQGFSAGGEFGSSTAFLVEHAPHRRGFFSSWQVASQGISLLLAALFGAVLN 180 Query: 181 NMLTPEQLASWGWRVPFIFGLLIAPAGIYIRRHLDEAPEFKESSEKTDAPLRDTFAHQKM 240 NMLTPEQLASWGWRVPFIFGLLIAPAGIYIRRHLDEAPEFKESSEKT+APLRDTFAHQKM Sbjct: 181 NMLTPEQLASWGWRVPFIFGLLIAPAGIYIRRHLDEAPEFKESSEKTNAPLRDTFAHQKM 240 Query: 241 RLLIGAGSVIMATVSVYLSLYIPTYAVKQLGLPAWSSFAAMSVAGLIMFIGSPLVGAMSD 300 RLLIGAGSVIMATVSVYLSLYIPTYAVKQLGLPAWSSFAAMSVAGLIMFIGSPLVGA+SD Sbjct: 241 RLLIGAGSVIMATVSVYLSLYIPTYAVKQLGLPAWSSFAAMSVAGLIMFIGSPLVGALSD 300 Query: 301 KIGRTPFMITSSALYIVLTYPMFVFLTNSPGFLQLLLLQTVIGVLMTMYFASMPALLADI 360 KIGRTPFMITSSALYIVLTYPMFVFLTNSPGFLQLLLLQTVIGVLMTMYFA+MPALLADI Sbjct: 301 KIGRTPFMITSSALYIVLTYPMFVFLTNSPGFLQLLLLQTVIGVLMTMYFAAMPALLADI 360 Query: 361 FPVATRGTGMSLAYNIAVTIFGGFAGLIITWLIDFTGNKLSVSYFVIFGAVLSLAASTAA 420 FPVATRGTGMSLAYNIAVTIFGGFAGLIITWLIDFTG+KLSVSYFVIFGAVLSL AS +A Sbjct: 361 FPVATRGTGMSLAYNIAVTIFGGFAGLIITWLIDFTGDKLSVSYFVIFGAVLSLIASLSA 420 Query: 421 RYVLRLR 427 R VLRLR Sbjct: 421 RLVLRLR 427 >ref|ZP_02882550.1| major facilitator superfamily MFS_1 [Burkholderia graminis C4D1M] gb|EDT11753.1| major facilitator superfamily MFS_1 [Burkholderia graminis C4D1M] Length = 425 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 259/427 (60%), Positives = 327/427 (76%), Gaps = 2/427 (0%) Query: 1 MTSNTAAPGAGTTHPQARRAIISSSIGNALEWFDILIYGAFAVVIAKQFFPTGDDSVSLL 60 M + TAA AG+ + RA+I++SIGNALEWFD+++YG FAVVIAK FFP G+D+VSLL Sbjct: 1 MNATTAASLAGSRR-NSWRAVIAASIGNALEWFDLVVYGFFAVVIAKLFFPAGNDTVSLL 59 Query: 61 LTFATFGVSFFMRPLGAVVLGAYSDRAGRKAALMLSIMLMTVGTAMIAFMPSYATIGLLA 120 LT TFGVSFFMRPLGA+V+GAY+DRAGRKAAL LSI+LM GT +IA +P+Y +IG+ A Sbjct: 60 LTLGTFGVSFFMRPLGAIVIGAYADRAGRKAALTLSILLMMGGTLIIAILPTYRSIGIAA 119 Query: 121 PAGIALGKMIQGFSAGGEFGSSTAFLVEHAPHRRGFFSSWQVASQGISLLLAAIFGAVLN 180 P + + +++QGFSAGGEFGS+TAFL EH P RRGFF+SWQVASQG++ LLAA FG VL Sbjct: 120 PVILVIARLMQGFSAGGEFGSATAFLAEHVPARRGFFASWQVASQGLTTLLAAGFGVVLT 179 Query: 181 NMLTPEQLASWGWRVPFIFGLLIAPAGIYIRRHLDEAPEFKESSEKTDAPLRDTFAHQKM 240 LTP+Q+A+WGWRVPF FGLLI P YIR LDE PEF ++E T PLRDTF QK+ Sbjct: 180 GNLTPKQMAAWGWRVPFFFGLLIGPVAWYIRTKLDETPEFL-AAETTTTPLRDTFTSQKL 238 Query: 241 RLLIGAGSVIMATVSVYLSLYIPTYAVKQLGLPAWSSFAAMSVAGLIMFIGSPLVGAMSD 300 RLLI G+V++ TVS YL L++PT+ VKQLGL +F+A+++ GLI + +PLVG +SD Sbjct: 239 RLLIAIGAVVLGTVSTYLVLFMPTFGVKQLGLAPSVAFSAIALTGLIQMVFAPLVGHLSD 298 Query: 301 KIGRTPFMITSSALYIVLTYPMFVFLTNSPGFLQLLLLQTVIGVLMTMYFASMPALLADI 360 + GRT M+ S L +VL YP FV+L P F L+ LQ ++G LMT YFA++P LL+++ Sbjct: 299 RHGRTTIMLISGVLLLVLIYPAFVYLVAHPTFGTLIALQILLGFLMTGYFAALPGLLSEM 358 Query: 361 FPVATRGTGMSLAYNIAVTIFGGFAGLIITWLIDFTGNKLSVSYFVIFGAVLSLAASTAA 420 FPV TR TGMSLAYNIAVT+FGGF II WLI FTG+K + SY++IF A+LSLA+ AA Sbjct: 359 FPVQTRTTGMSLAYNIAVTVFGGFGPFIIAWLISFTGSKAAPSYYLIFAALLSLASLVAA 418 Query: 421 RYVLRLR 427 R L R Sbjct: 419 RRKLGFR 425 >ref|YP_001633504.1| MFS permease [Bordetella petrii DSM 12804] emb|CAP45237.1| probable MFS permease [Bordetella petrii] Length = 427 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 250/426 (58%), Positives = 326/426 (76%), Gaps = 1/426 (0%) Query: 2 TSNTAAPGAGTTHPQARRAIISSSIGNALEWFDILIYGAFAVVIAKQFFPTGDDSVSLLL 61 T+ T P AG P A R I ++SIGNALEWFD+++YG FAV I++ FFP+ +DS+SLLL Sbjct: 3 TATTFNPAAGRASPAAWRIIAAASIGNALEWFDLVVYGFFAVTISRLFFPSDNDSISLLL 62 Query: 62 TFATFGVSFFMRPLGAVVLGAYSDRAGRKAALMLSIMLMTVGTAMIAFMPSYATIGLLAP 121 T TFGVSFFMRPLGAVVLG Y+DR GR+A L LSI+LM +GT +IA MP+Y IG+ AP Sbjct: 63 TLGTFGVSFFMRPLGAVVLGVYADRVGRRATLTLSIVLMMLGTLLIAVMPTYDAIGIWAP 122 Query: 122 AGIALGKMIQGFSAGGEFGSSTAFLVEHAPHRRGFFSSWQVASQGISLLLAAIFGAVLNN 181 GI +MIQGFSAGGEFGS+TAFL EH P RRGFF+SWQVASQG++ LLAA FGA LN Sbjct: 123 IGIVAARMIQGFSAGGEFGSATAFLAEHTPDRRGFFASWQVASQGLTTLLAAGFGAGLNE 182 Query: 182 MLTPEQLASWGWRVPFIFGLLIAPAGIYIRRHLDEAPEFKESSEKTDAPLRDTFAHQKMR 241 LTPEQ+ SWGWR+PF+FGL+I P YIR +DE PEF + E+T+ PL DTF ++R Sbjct: 183 WLTPEQMQSWGWRIPFLFGLVIGPVAYYIRTRIDETPEFL-AVERTETPLSDTFTTHRLR 241 Query: 242 LLIGAGSVIMATVSVYLSLYIPTYAVKQLGLPAWSSFAAMSVAGLIMFIGSPLVGAMSDK 301 LL+ G+V++ TV+ YL LY+PT+AVKQLGLP ++FAA + G++ FI +P+VG SD+ Sbjct: 242 LLLAIGTVVLGTVATYLVLYMPTFAVKQLGLPPAAAFAATLLTGVVQFIVAPMVGHWSDR 301 Query: 302 IGRTPFMITSSALYIVLTYPMFVFLTNSPGFLQLLLLQTVIGVLMTMYFASMPALLADIF 361 GRT M+ ++AL++VL YP+F+ L SP F ++++Q +IG+L++ YF ++PALL D+F Sbjct: 302 HGRTGIMVAAAALFLVLIYPLFLLLAASPTFGTMIVVQIIIGLLLSGYFGALPALLTDLF 361 Query: 362 PVATRGTGMSLAYNIAVTIFGGFAGLIITWLIDFTGNKLSVSYFVIFGAVLSLAASTAAR 421 P +R TGMSLAYNIAVTIFGGFA II WLI +GNKL+ S+++IF A++SLA+ A R Sbjct: 362 PTQSRTTGMSLAYNIAVTIFGGFAPFIIVWLISASGNKLAPSFYLIFAALVSLASLFAVR 421 Query: 422 YVLRLR 427 L L+ Sbjct: 422 KRLGLK 427 >ref|YP_001894351.1| major facilitator superfamily protein [Burkholderia phytofirmans PsJN] gb|ACD15127.1| major facilitator superfamily MFS_1 [Burkholderia phytofirmans PsJN] Length = 425 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 261/427 (61%), Positives = 327/427 (76%), Gaps = 2/427 (0%) Query: 1 MTSNTAAPGAGTTHPQARRAIISSSIGNALEWFDILIYGAFAVVIAKQFFPTGDDSVSLL 60 M + TAA AG+ + RA+I++SIGNALEWFD+++YG FAV+IAK FFP G+D+VSLL Sbjct: 1 MNATTAASLAGSRQ-NSWRAVIAASIGNALEWFDLVVYGFFAVIIAKLFFPAGNDTVSLL 59 Query: 61 LTFATFGVSFFMRPLGAVVLGAYSDRAGRKAALMLSIMLMTVGTAMIAFMPSYATIGLLA 120 LT TFGVSFFMRPLGA+V+GAY+DRAGRKAAL LSI+LM GT +IA +P+Y +IGL A Sbjct: 60 LTLGTFGVSFFMRPLGAIVIGAYADRAGRKAALTLSILLMMGGTLIIAILPTYQSIGLAA 119 Query: 121 PAGIALGKMIQGFSAGGEFGSSTAFLVEHAPHRRGFFSSWQVASQGISLLLAAIFGAVLN 180 P + L +++QGFSAGGEFGS+TAFL EH P RRGFF+SWQVASQG++ LLAA FG +L Sbjct: 120 PVILVLARLMQGFSAGGEFGSATAFLAEHVPGRRGFFASWQVASQGLTTLLAAGFGVLLT 179 Query: 181 NMLTPEQLASWGWRVPFIFGLLIAPAGIYIRRHLDEAPEFKESSEKTDAPLRDTFAHQKM 240 L+PEQ+ASWGWRVPF FGLLI P YIR LDE PEF ++E T+ PLRDTF QK+ Sbjct: 180 GKLSPEQMASWGWRVPFFFGLLIGPVAWYIRTKLDETPEFL-AAETTETPLRDTFTSQKL 238 Query: 241 RLLIGAGSVIMATVSVYLSLYIPTYAVKQLGLPAWSSFAAMSVAGLIMFIGSPLVGAMSD 300 RLLI G V++ TVS YL L++PT+ VKQLGL +F+A+++ GLI + SPLVG +SD Sbjct: 239 RLLIAIGVVVLGTVSTYLVLFMPTFGVKQLGLAPSVAFSAIALTGLIQMVFSPLVGHLSD 298 Query: 301 KIGRTPFMITSSALYIVLTYPMFVFLTNSPGFLQLLLLQTVIGVLMTMYFASMPALLADI 360 + GRT M++S+ L +VL YP FV+L P F L+ +Q V G LMT YFA++P LL+++ Sbjct: 299 RHGRTTIMLSSALLLLVLIYPAFVYLVAHPTFGTLIAMQIVFGFLMTGYFAALPGLLSEM 358 Query: 361 FPVATRGTGMSLAYNIAVTIFGGFAGLIITWLIDFTGNKLSVSYFVIFGAVLSLAASTAA 420 FPV TR TGMSLAYNIAVTIFGGF II WLI TG+K + SY++IF A++SL A TAA Sbjct: 359 FPVQTRTTGMSLAYNIAVTIFGGFGPFIIAWLISVTGSKAAPSYYLIFAAIVSLVALTAA 418 Query: 421 RYVLRLR 427 R L R Sbjct: 419 RRKLGFR 425 >ref|YP_003905721.1| major facilitator superfamily protein [Burkholderia sp. CCGE1003] gb|ADN56430.1| major facilitator superfamily MFS_1 [Burkholderia sp. CCGE1003] Length = 425 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 261/427 (61%), Positives = 328/427 (76%), Gaps = 2/427 (0%) Query: 1 MTSNTAAPGAGTTHPQARRAIISSSIGNALEWFDILIYGAFAVVIAKQFFPTGDDSVSLL 60 M + TAA AG+ + RA+I++SIGNALEWFD+++YG FAVVIAK FFP G+D+VSLL Sbjct: 1 MNATTAASLAGS-RKNSWRAVIAASIGNALEWFDLVVYGFFAVVIAKLFFPAGNDTVSLL 59 Query: 61 LTFATFGVSFFMRPLGAVVLGAYSDRAGRKAALMLSIMLMTVGTAMIAFMPSYATIGLLA 120 LT TFGVSFFMRPLGAVV+GAY+DRAGRKAAL LSI+LM GT +IA +P+Y +IGL A Sbjct: 60 LTLGTFGVSFFMRPLGAVVIGAYADRAGRKAALTLSILLMMGGTFIIAVLPTYQSIGLAA 119 Query: 121 PAGIALGKMIQGFSAGGEFGSSTAFLVEHAPHRRGFFSSWQVASQGISLLLAAIFGAVLN 180 P + L +++QGFSAGGEFGS+TAFL EH P RRGFF+SWQVASQG++ LLAA FG +L Sbjct: 120 PVILVLARLMQGFSAGGEFGSATAFLAEHVPGRRGFFASWQVASQGLTTLLAAGFGVLLT 179 Query: 181 NMLTPEQLASWGWRVPFIFGLLIAPAGIYIRRHLDEAPEFKESSEKTDAPLRDTFAHQKM 240 LTP+Q+ASWGWRVPF FGLLI P YIR LDE PEF ++E T PLRDTF+ QK+ Sbjct: 180 GGLTPDQMASWGWRVPFFFGLLIGPVAWYIRTKLDETPEFL-AAETTTTPLRDTFSSQKL 238 Query: 241 RLLIGAGSVIMATVSVYLSLYIPTYAVKQLGLPAWSSFAAMSVAGLIMFIGSPLVGAMSD 300 RL+I G+V++ TVS YL L++PT+ VKQLGL +F+A+++ GLI + +PLVG +SD Sbjct: 239 RLVIAIGTVVLGTVSTYLVLFMPTFGVKQLGLAPSVAFSAIALTGLIQMVFAPLVGHLSD 298 Query: 301 KIGRTPFMITSSALYIVLTYPMFVFLTNSPGFLQLLLLQTVIGVLMTMYFASMPALLADI 360 + GRT M+ + L +VL YP FV+L P F L+ LQ V+G LMT YFA++P LL+++ Sbjct: 299 RHGRTTIMLIAGLLLLVLIYPAFVYLVAHPTFGTLIALQVVLGFLMTGYFAALPGLLSEM 358 Query: 361 FPVATRGTGMSLAYNIAVTIFGGFAGLIITWLIDFTGNKLSVSYFVIFGAVLSLAASTAA 420 FPV TR TGMSLAYNIAVT+FGGF II WLI FTG+K + SY++IF A+LS+AA AA Sbjct: 359 FPVQTRTTGMSLAYNIAVTVFGGFGPFIIAWLISFTGSKAAPSYYLIFAALLSVAALVAA 418 Query: 421 RYVLRLR 427 R L R Sbjct: 419 RRKLGFR 425