BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3761.p (557 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776513.1| propionate catabolism operon regulatory prot... 844 0.0 ref|YP_001101493.1| propionate catabolism transcriptional activa... 775 0.0 ref|YP_001355176.1| propionate catabolism operon regulatory prot... 759 0.0 ref|YP_004754182.1| propionate catabolism operon regulatory prot... 719 0.0 ref|ZP_08274242.1| Propionate catabolism operon regulatory prote... 684 0.0 >ref|YP_003776513.1| propionate catabolism operon regulatory protein [Herbaspirillum seropedicae SmR1] gb|ADJ64605.1| propionate catabolism operon regulatory protein [Herbaspirillum seropedicae SmR1] Length = 544 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 472/549 (85%), Positives = 498/549 (90%), Gaps = 8/549 (1%) Query: 1 MKRPAPADRLADKPVIWTVSVSRLSELFRDITLEFDDRADIEPIPLGFEDAVRHIRERLA 60 MKRPAP DR ADKPVIWTVSVSRLSELFRDITLEFD ADIEPI LGF+DAVR IRERLA Sbjct: 1 MKRPAPVDRHADKPVIWTVSVSRLSELFRDITLEFDALADIEPIHLGFDDAVREIRERLA 60 Query: 61 TEHCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARARQISPRIGLVTYQEAMPA 120 TE CD VI+AGSNGAYLKSRL VPVI+A+ASGFDVMQALARARQ++ RI LVTYQEAMPA Sbjct: 61 TERCDVVISAGSNGAYLKSRLPVPVIVARASGFDVMQALARARQLTRRIALVTYQEAMPA 120 Query: 121 LTEFQQMFGLDIAQRTYATEEDARSQINELKAAGIKAIVGAGLITGLAQEAGLAGIFVYS 180 L EF Q FGL+I QRTYATEEDAR+ +NELKAAGI+A+ GAGLIT LA+EAG+ GIF+YS Sbjct: 121 LAEFGQRFGLEIVQRTYATEEDARAVVNELKAAGIEAVAGAGLITDLAEEAGMRGIFLYS 180 Query: 181 AASIRQAFEDALELARLTQLESTRGPSLPVADSLRARHHLKDLRGDSEVMETVRQSITLF 240 AA++RQAFEDALELARLTQLESTR P LPVADSLRARHHLKDLRGDS METVRQSITLF Sbjct: 181 AATVRQAFEDALELARLTQLESTRSPILPVADSLRARHHLKDLRGDSAEMETVRQSITLF 240 Query: 241 ARSPANVLIQGETGTGKELAAQAIHRAHPRMQGKTQAAHPFVAINCGALAESLLESELFG 300 ARSPANVLIQGETGTGKELAAQAIHRAHP MQGKTQAAHPFVAINCGALAESLLESELFG Sbjct: 241 ARSPANVLIQGETGTGKELAAQAIHRAHPLMQGKTQAAHPFVAINCGALAESLLESELFG 300 Query: 301 YEEGAFTGSRRGGRAGVFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPI 360 YEEGAFTGSRRGGRAGVFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPI Sbjct: 301 YEEGAFTGSRRGGRAGVFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPI 360 Query: 361 AVQVRIISATHCDLEARVRDGRFRADLYYRLSVLRLQLPPLRARREDIAALAEWHLKHAL 420 VQVRIISATHCDL+ARVR+GRFRADLYYRLSVL LQLPPLR RR+DIAALAEWHLKHAL Sbjct: 361 PVQVRIISATHCDLQARVREGRFRADLYYRLSVLCLQLPPLRERRDDIAALAEWHLKHAL 420 Query: 421 AAMDARPHANLGAEILRCAPLLSAYDWPGNVRELRNLMERLALFLAAEPLQALTPALIQR 480 AA+D RPHANLGAEI+RCAPLL YDWPGNVRELRNLMERLALFLAAEPLQALTPALIQR Sbjct: 421 AALDVRPHANLGAEIVRCAPLLCRYDWPGNVRELRNLMERLALFLAAEPLQALTPALIQR 480 Query: 481 VAPELAGMAQPLLSNTAEVVAPHELITSDIVPDADAIEAALRRFRGNRAAAARHLGISRT 540 VAPEL G A P AP E +I PD +I AALRRFRGNRAAAAR+LG+SRT Sbjct: 481 VAPEL-GQAPP------SPAAPDE-AQENITPDNASIAAALRRFRGNRAAAARYLGMSRT 532 Query: 541 TLWRKLKET 549 TLWRKLKE+ Sbjct: 533 TLWRKLKES 541 >ref|YP_001101493.1| propionate catabolism transcriptional activator [Herminiimonas arsenicoxydans] emb|CAL63372.1| Propionate catabolism operon regulatory protein [Herminiimonas arsenicoxydans] Length = 550 Score = 775 bits (2001), Expect = 0.0, Method: Composition-based stats. Identities = 430/557 (77%), Positives = 479/557 (85%), Gaps = 9/557 (1%) Query: 1 MKRPA-PADRLADKPVIWTVSVSRLSELFRDITLEFDDRADIEPIPLGFEDAVRHIRERL 59 MKR + P ADKPVIWTVS+SRL ELFRDITLEFDD+ADIEPI LGFEDAVRHIRERL Sbjct: 1 MKRSSSPFRDNADKPVIWTVSISRLFELFRDITLEFDDQADIEPIHLGFEDAVRHIRERL 60 Query: 60 ATEHCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARARQISPRIGLVTYQEAMP 119 ATE CDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARAR+I+P IGL+TYQE MP Sbjct: 61 ATERCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARARKITPDIGLITYQETMP 120 Query: 120 ALTEFQQMFGLDIAQRTYATEEDARSQINELKAAGIKAIVGAGLITGLAQEAGLAGIFVY 179 AL EFQ FGL IAQRTY TEEDAR+QINELK+AGIKAIVGAGLIT LA+EAGL+G+FVY Sbjct: 121 ALAEFQATFGLHIAQRTYVTEEDARAQINELKSAGIKAIVGAGLITDLAEEAGLSGVFVY 180 Query: 180 SAASIRQAFEDALELARLTQLESTRGPSLPVADSLRARHHLKDLRGDSEVMETVRQSITL 239 S+ASIRQAFEDALELARLTQLE+TRG S PVAD+LRA+HH+KD+RG+S VME+VRQSITL Sbjct: 181 SSASIRQAFEDALELARLTQLEATRGRSFPVADTLRAKHHIKDVRGESAVMESVRQSITL 240 Query: 240 FARSPANVLIQGETGTGKELAAQAIHRAHPRMQGKTQAAHPFVAINCGALAESLLESELF 299 FA+SPA VLIQGETGTGKEL AQAIHRAHP +QGKTQA HPFVA+NCGALAESLLESELF Sbjct: 241 FAKSPATVLIQGETGTGKELVAQAIHRAHPLIQGKTQAGHPFVAVNCGALAESLLESELF 300 Query: 300 GYEEGAFTGSRRGGRAGVFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRP 359 GYEEGAFTGSRRGGRAG+FEAAHRGTL LDEIGEMPL LQTRLLRVLEEREVVRVGGTRP Sbjct: 301 GYEEGAFTGSRRGGRAGLFEAAHRGTLFLDEIGEMPLSLQTRLLRVLEEREVVRVGGTRP 360 Query: 360 IAVQVRIISATHCDLEARVRDGRFRADLYYRLSVLRLQLPPLRARREDIAALAEWHLKHA 419 I V VRIISATHCDL+ARVR+GRFRADL+YRLSVLRL LPPLR R ED+ AL EW+LK A Sbjct: 361 IPVSVRIISATHCDLDARVREGRFRADLFYRLSVLRLSLPPLRQRPEDVPALTEWYLKSA 420 Query: 420 LAAMDARPHANLGAEILRCAPLLSAYDWPGNVRELRNLMERLALFLAAEPLQALTPALIQ 479 LA++D RPHANL AEI C PLL++Y WPGNVRELRNLMERLALFLAA PLQALTPA ++ Sbjct: 421 LASLDVRPHANLHAEISTCMPLLASYAWPGNVRELRNLMERLALFLAAAPLQALTPAFLK 480 Query: 480 RVAPELAGMAQPLLSNTAEVVAPHELITSDIVPDADAIEAALRRFRGNRAAAARHLGISR 539 +APEL+ ++ ++ V E + ++ L+R GNR AAA +LGISR Sbjct: 481 NIAPELSASVSDAIAVASQDVLAQE--------QTETLQQVLQRHHGNREAAANYLGISR 532 Query: 540 TTLWRKLKETEAQNREP 556 TTLWR+L+ + +P Sbjct: 533 TTLWRRLQLAAHADDKP 549 >ref|YP_001355176.1| propionate catabolism operon regulatory protein [Janthinobacterium sp. Marseille] gb|ABR90830.1| propionate catabolism operon regulatory protein [Janthinobacterium sp. Marseille] Length = 543 Score = 759 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 434/548 (79%), Positives = 479/548 (87%), Gaps = 12/548 (2%) Query: 1 MKRPA-PADRLADKPVIWTVSVSRLSELFRDITLEFDDRADIEPIPLGFEDAVRHIRERL 59 MKRP+ P ADKPVIWTVS+SRL ELFRDITLEFD++ADIEPI LGFEDAVRHIRERL Sbjct: 1 MKRPSSPFRDNADKPVIWTVSISRLFELFRDITLEFDEQADIEPIHLGFEDAVRHIRERL 60 Query: 60 ATEHCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARARQISPRIGLVTYQEAMP 119 ATE CDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARAR+I+P IGLVTYQE MP Sbjct: 61 ATERCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARARKITPDIGLVTYQETMP 120 Query: 120 ALTEFQQMFGLDIAQRTYATEEDARSQINELKAAGIKAIVGAGLITGLAQEAGLAGIFVY 179 AL EFQ FGL+IAQRTY TEEDAR+QINELK AGIKAIVGAGLIT LA+EAGL GIFVY Sbjct: 121 ALAEFQTTFGLNIAQRTYVTEEDARAQINELKTAGIKAIVGAGLITDLAEEAGLTGIFVY 180 Query: 180 SAASIRQAFEDALELARLTQLESTRGPSLPVADSLRARHHLKDLRGDSEVMETVRQSITL 239 S+ASIRQAFEDALELARLTQLE+TRG S PVAD+LRA+HH+KDLRG+S ME+VRQSITL Sbjct: 181 SSASIRQAFEDALELARLTQLEATRGRSFPVADTLRAKHHIKDLRGESAAMESVRQSITL 240 Query: 240 FARSPANVLIQGETGTGKELAAQAIHRAHPRMQGKTQAAHPFVAINCGALAESLLESELF 299 FA+S A VLIQGETGTGKEL AQA+HRAHP MQGKTQA HPFVA+NCGALAESLLESELF Sbjct: 241 FAKSAATVLIQGETGTGKELVAQAMHRAHPLMQGKTQAGHPFVAVNCGALAESLLESELF 300 Query: 300 GYEEGAFTGSRRGGRAGVFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRP 359 GYEEGAFTGSRRGGRAG+FEAAHRGTL LDEIGEMPL LQTRLLRVLEEREVVRVGGTRP Sbjct: 301 GYEEGAFTGSRRGGRAGLFEAAHRGTLFLDEIGEMPLSLQTRLLRVLEEREVVRVGGTRP 360 Query: 360 IAVQVRIISATHCDLEARVRDGRFRADLYYRLSVLRLQLPPLRARREDIAALAEWHLKHA 419 I V VRIISATHCDL+ARVR+GRFRADL+YRLSVLRL LPPLR R+ED+AALAEW+LK+A Sbjct: 361 IPVSVRIISATHCDLDARVREGRFRADLFYRLSVLRLSLPPLRERQEDVAALAEWYLKNA 420 Query: 420 LAAMDARPHANLGAEILRCAPLLSAYDWPGNVRELRNLMERLALFLAAEPLQALTPALIQ 479 LA++D RP ANL AE+L C PLL AY WPGNVRELRNLMERLALFLAA PLQALTPA ++ Sbjct: 421 LASLDVRPPANLQAELLTCLPLLLAYRWPGNVRELRNLMERLALFLAAAPLQALTPAFLK 480 Query: 480 RVAPELAGMAQPLLSNTAEVVAPHELITSDIVPDADAIEAALRRFRGNRAAAARHLGISR 539 +APEL+G V+A ++ + +A+ ++ L R GNR AAA +LGISR Sbjct: 481 SIAPELSG-----------VIARDAAVSHEPPVEAETLQQVLLRHHGNREAAANYLGISR 529 Query: 540 TTLWRKLK 547 TTLWR+L+ Sbjct: 530 TTLWRRLQ 537 >ref|YP_004754182.1| propionate catabolism operon regulatory protein prpR [Collimonas fungivorans Ter331] gb|AEK63359.1| Propionate catabolism operon regulatory protein PrpR [Collimonas fungivorans Ter331] Length = 549 Score = 719 bits (1857), Expect = 0.0, Method: Composition-based stats. Identities = 406/562 (72%), Positives = 465/562 (82%), Gaps = 23/562 (4%) Query: 1 MKRP--APADRLADKPVIWTVSVSRLSELFRDITLEFDDRADIEPIPLGFEDAVRHIRER 58 M RP + ++R D PVIWTVSVSRL +LFRDITLEFD +A+I PI LGFEDAV+HIRER Sbjct: 1 MARPLHSSSNRDNDLPVIWTVSVSRLFDLFRDITLEFDHQANIAPIQLGFEDAVQHIRER 60 Query: 59 LATEHCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARARQISPRIGLVTYQEAM 118 LATE CDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARAR+I+PR+G++TYQ +M Sbjct: 61 LATERCDAVIAAGSNGAYLKSRLSVPVIIAKASGFDVMQALARARRITPRVGVITYQASM 120 Query: 119 PALTEFQQMFGLDIAQRTYATEEDARSQINELKAAGIKAIVGAGLITGLAQEAGLAGIFV 178 PAL EFQ F L I QR+YATEEDAR+Q+N+LKA+GIKAIVGAGLIT LA+EAGL+GIFV Sbjct: 121 PALAEFQAAFDLSIEQRSYATEEDARAQVNDLKASGIKAIVGAGLITDLAEEAGLSGIFV 180 Query: 179 YSAASIRQAFEDALELARLTQL--ESTRGPSLPVA----DSLRARHHLKDLRGDSEVMET 232 YSAASIRQAF DALELARL+QL EST G S P + D+LRA+H + DLRG S+ ME Sbjct: 181 YSAASIRQAFNDALELARLSQLQLESTGGRSYPASYSENDTLRAKHGISDLRGPSDAMEA 240 Query: 233 VRQSITLFARSPANVLIQGETGTGKELAAQAIHRAHPRMQGKTQA--AHPFVAINCGALA 290 +R+S+TLFARSPANVLI GETG+GKELAAQAIHR HP QG A + PFVA+NCGA+A Sbjct: 241 IRRSVTLFARSPANVLIHGETGSGKELAAQAIHREHPLAQGTAGARGSRPFVAVNCGAIA 300 Query: 291 ESLLESELFGYEEGAFTGSRRGGRAGVFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEERE 350 ESLLESELFGYEEGAFTGSRRGGRAG+FEAAHRGTL LDEIGEMPL LQTRLLRVLEERE Sbjct: 301 ESLLESELFGYEEGAFTGSRRGGRAGLFEAAHRGTLFLDEIGEMPLALQTRLLRVLEERE 360 Query: 351 VVRVGGTRPIAVQVRIISATHCDLEARVRDGRFRADLYYRLSVLRLQLPPLRARREDIAA 410 VVRVG TRPIAV VRIISATHCDLE RVRDGRFRADL+YR+ VLRL LPPLRAR +D+ A Sbjct: 361 VVRVGSTRPIAVDVRIISATHCDLEERVRDGRFRADLFYRIGVLRLNLPPLRARPDDLVA 420 Query: 411 LAEWHLKHALAAMDARPHANLGAEILRCAPLLSAYDWPGNVRELRNLMERLALFLAAEPL 470 LAEW LK ALA++D RPHANL AE++ CAPLL +Y WPGNVRELRN+MER+ALFL+AEPL Sbjct: 421 LAEWCLKQALASLDVRPHANLHAEVVACAPLLESYAWPGNVRELRNVMERVALFLSAEPL 480 Query: 471 QALTPALIQRVAPELAGMAQPLLSNTAEVVAPHELITSDIVPDADAIEAALRRFRGNRAA 530 +++TPA + APELA A L + A V ++ L RF GNRAA Sbjct: 481 RSMTPAFLLAAAPELATGAAALPAAVAPAV-------------VESAAQVLARFDGNRAA 527 Query: 531 AARHLGISRTTLWRKLKETEAQ 552 AA++LG+SRTTLWRKL+E + + Sbjct: 528 AAQYLGVSRTTLWRKLREQQER 549 >ref|ZP_08274242.1| Propionate catabolism operon regulatory protein PrpR [Oxalobacteraceae bacterium IMCC9480] gb|EGF32290.1| Propionate catabolism operon regulatory protein PrpR [Oxalobacteraceae bacterium IMCC9480] Length = 532 Score = 684 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 380/538 (70%), Positives = 438/538 (81%), Gaps = 23/538 (4%) Query: 12 DKPVIWTVSVSRLSELFRDITLEFDDRADIEPIPLGFEDAVRHIRERLATEHCDAVIAAG 71 DKPVIWTVS+SRL +LFRDI LE+ D A IEPI LGFEDAVRHIRERL E CDAVIAAG Sbjct: 14 DKPVIWTVSISRLFDLFRDIMLEYGDAATIEPINLGFEDAVRHIRERLVNERCDAVIAAG 73 Query: 72 SNGAYLKSRLSVPVIIAKASGFDVMQALARARQISPRIGLVTYQEAMPALTEFQQMFGLD 131 SN AYLKSRLSVPVIIAKASGFDVMQALARAR+I+PRIGL++YQ+ M L++FQ FGLD Sbjct: 74 SNAAYLKSRLSVPVIIAKASGFDVMQALARARKITPRIGLISYQQTMAELSDFQATFGLD 133 Query: 132 IAQRTYATEEDARSQINELKAAGIKAIVGAGLITGLAQEAGLAGIFVYSAASIRQAFEDA 191 I QR+Y TEEDAR+QI+ELKAAGI+AIVGAGLIT LA+EAGLAG+FVYSAASIR AF+DA Sbjct: 134 IVQRSYVTEEDARAQISELKAAGIQAIVGAGLITDLAEEAGLAGVFVYSAASIRLAFDDA 193 Query: 192 LELARLTQLESTRGPSLPVADSLRARHHLKDLRGDSEVMETVRQSITLFARSPANVLIQG 251 L++AR T+++S R P AD+LRARH L DLRG+S M+ RQ+ITLFARSPA VLIQG Sbjct: 194 LDIARFTRIDSNRRRPTPPADTLRARHGLNDLRGESMAMQRARQAITLFARSPATVLIQG 253 Query: 252 ETGTGKELAAQAIHRAHPRMQGKTQAAHPFVAINCGALAESLLESELFGYEEGAFTGSRR 311 ETG+GKELAAQAIHR T+A PFVA+NCGA+AESLLE+ELFG+EEGAFTGSRR Sbjct: 254 ETGSGKELAAQAIHRE------STRARQPFVALNCGAVAESLLEAELFGHEEGAFTGSRR 307 Query: 312 GGRAGVFEAAHRGTLLLDEIGEMPLPLQTRLLRVLEEREVVRVGGTRPIAVQVRIISATH 371 GG AG+FEAA GTL LDEIGEM LPLQTRLLRVLEEREVVRVGGTRPI V VRI+SATH Sbjct: 308 GGHAGLFEAAQHGTLFLDEIGEMALPLQTRLLRVLEEREVVRVGGTRPIPVDVRIVSATH 367 Query: 372 CDLEARVRDGRFRADLYYRLSVLRLQLPPLRARREDIAALAEWHLKHALAAMDARPHANL 431 CDL+ R+++GRFR DL+YRL VLR+ LPPLR R +D LA W LK+ALAAM RPHANL Sbjct: 368 CDLDLRMQEGRFRPDLFYRLGVLRMTLPPLRERPDDQVELAGWCLKNALAAMGLRPHANL 427 Query: 432 GAEILRCAPLLSAYDWPGNVRELRNLMERLALFLAAEPLQALTPALIQRVAPEL--AGMA 489 AE+ C+ LL+ Y WPGNVRELRN+MER+AL+LAAEPLQAL+P L+ VAPEL AG Sbjct: 428 QAELQACSTLLAGYGWPGNVRELRNMMERVALYLAAEPLQALSPGLLLAVAPELMRAGAV 487 Query: 490 QPLLSNTAEVVAPHELITSDIVPDADAIEAALRRFRGNRAAAARHLGISRTTLWRKLK 547 P++ +T AP E +T L RF GNR AAA++LG+SRTTLWRKL+ Sbjct: 488 APMVLST----APTESLTE-----------VLARFDGNREAAAKYLGVSRTTLWRKLR 530