BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3758.p         (149 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776510.1| signal peptide protein [Herbaspirillum serop...   206   1e-51
ref|YP_004754179.1| putative signal peptide protein [Collimonas ...   112   2e-23
ref|YP_004235404.1| hypothetical protein Acav_2933 [Acidovorax a...    77   7e-13
ref|YP_970561.1| hypothetical protein Aave_2209 [Acidovorax citr...    77   8e-13
ref|YP_003169309.1| hypothetical protein CAP2UW1_4138 [Candidatu...    76   2e-12

>ref|YP_003776510.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64602.1| signal peptide protein [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  206 bits (524), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 117/145 (80%), Positives = 124/145 (85%), Gaps = 2/145 (1%)

Query: 5   MIAAIVSRRLSALPLTSFVLAGAVAVALSACSSTPVPVTETKPVLPQLLQSPAATQPSWA 64
           MIA++ S R S  PL     A A  +  S  S   VPVTETKPVLPQLLQSPAATQP+WA
Sbjct: 1   MIASLHSLRSSFRPLCL--AASAAVLLASCASREEVPVTETKPVLPQLLQSPAATQPTWA 58

Query: 65  TQLKTGAFSCEMGNKVEIRMDGRVTDGVTLVWKGSSYMMNPVSTSTGAVRLENKGEGLVW 124
           TQLKTGAFSCEMGNKVE+RMDGRVTDGVTLVWKG +YMMNPVSTSTGAVRLENKGEGLVW
Sbjct: 59  TQLKTGAFSCEMGNKVELRMDGRVTDGVTLVWKGKNYMMNPVSTSTGAVRLENKGEGLVW 118

Query: 125 IQIPSKSMLLNSKIGQQLANDCRTR 149
           IQIPSKSMLLN+KIGQQLANDCRTR
Sbjct: 119 IQIPSKSMLLNAKIGQQLANDCRTR 143


>ref|YP_004754179.1| putative signal peptide protein [Collimonas fungivorans Ter331]
 gb|AEK63356.1| putative signal peptide protein [Collimonas fungivorans Ter331]
          Length = 134

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 63/114 (55%), Positives = 80/114 (70%), Gaps = 6/114 (5%)

Query: 36  SSTPVPVTETKPVLPQLLQSPAATQPSWATQLKTGAFSCEMGNKVEIRMDGRVTDGVTLV 95
           SS P+  T+ +P LP LL+     +P+ +  L TG F CE+GN+V+  + G     V L 
Sbjct: 27  SSVPLAETKPEPTLPNLLK----LEPTPSASLLTGNFYCELGNRVD--LAGGAGSEVKLN 80

Query: 96  WKGSSYMMNPVSTSTGAVRLENKGEGLVWIQIPSKSMLLNSKIGQQLANDCRTR 149
           WKG SY M  VST+TGAVRLE+K  GLVWIQIP+KSMLLNSK+GQQLAN+C+ R
Sbjct: 81  WKGRSYPMTTVSTTTGAVRLEDKASGLVWIQIPAKSMLLNSKLGQQLANECKLR 134


>ref|YP_004235404.1| hypothetical protein Acav_2933 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gb|ADX46837.1| hypothetical protein Acav_2933 [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 236

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)

Query: 43  TETKPVLPQLLQSPAATQPS---WATQLKTGAFSCEMGNKVEIRMDGRVTDGVTLVWKGS 99
           + T  V   L+ + AA  P+    A ++ TG   CE+G  V I  D +      +  K  
Sbjct: 85  SATNQVASGLIAAEAALSPAELEIAQRVHTGHIPCELGASVNIEADPKSPGYFEVAGKNF 144

Query: 100 SYMMNPVSTSTGAVRLENKGEGLVWIQIPSKSMLLNSKIGQQLANDC 146
            Y M PV+TSTGAVRLE++  G VWIQI +KSML+N K+GQ+LA++C
Sbjct: 145 HYRMTPVATSTGAVRLEDQKAGAVWIQISNKSMLMNQKLGQRLADEC 191


>ref|YP_970561.1| hypothetical protein Aave_2209 [Acidovorax citrulli AAC00-1]
 gb|ABM32787.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 236

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)

Query: 43  TETKPVLPQLLQSPAATQPS---WATQLKTGAFSCEMGNKVEIRMDGRVTDGVTLVWKGS 99
           + T  V   L+ + AA  P+    A ++ TG   CE+G  V I  D +      +  K  
Sbjct: 85  SATNQVASGLIAAEAALSPAELEIAQRVHTGHIPCELGASVNIEADPKSPGYFEVAGKNF 144

Query: 100 SYMMNPVSTSTGAVRLENKGEGLVWIQIPSKSMLLNSKIGQQLANDC 146
            Y M PV+TSTGAVRLE++  G VWIQI +KSML+N K+GQ+LA++C
Sbjct: 145 HYRMTPVATSTGAVRLEDQKAGAVWIQIANKSMLMNQKLGQRLADEC 191


>ref|YP_003169309.1| hypothetical protein CAP2UW1_4138 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gb|ACV37380.1| hypothetical protein CAP2UW1_4138 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 183

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 24/156 (15%)

Query: 8   AIVSRRLSALP-------------LTSFVLAGAVAVALSACSSTPVPVTETKPVLPQLLQ 54
           A+ SR + +LP             L   V A AV   L+AC++T       +P L     
Sbjct: 18  ALTSRAIFSLPVNYLRRNNVTLNRLIQTVAATAVCGMLAACATT-------EPQLDASGS 70

Query: 55  SPAATQPSWATQLK----TGAFSCEMGNKVEIRMDGRVTDGVTLVWKGSSYMMNPVSTST 110
            P A +     QLK    +G + CE+G +VEI+ D R  + + L W+GS + +    +++
Sbjct: 71  RPTAARAREQQQLKFQLASGVYRCELGQRVEIQRDARNANLIELNWQGSRHTLQRYDSTS 130

Query: 111 GAVRLENKGEGLVWIQIPSKSMLLNSKIGQQLANDC 146
           G  R E++  GL+WI +P KS+L++   G+ LAN+C
Sbjct: 131 GLPRYEDRKNGLLWIDLPWKSVLMDVNSGRPLANEC 166