BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3751.p         (190 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776506.1| hypothetical protein Hsero_3114 [Herbaspiril...   231   6e-59
ref|YP_003049212.1| hypothetical protein Mmol_1781 [Methylotener...    57   1e-06

>ref|YP_003776506.1| hypothetical protein Hsero_3114 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64598.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  231 bits (588), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 143/190 (75%), Positives = 167/190 (87%)

Query: 1   MKKLLSSFLVASAFVAMASSASAADLERTRTLVWTDATSTFNARFGDGTTGQTFLENFTF 60
           MKKL+ S L+ASAF+ MAS+ASAADLERTR+L+WTDATSTFNAR+G+GTTG TFLENFTF
Sbjct: 1   MKKLIGSLLLASAFIGMASTASAADLERTRSLIWTDATSTFNARYGEGTTGLTFLENFTF 60

Query: 61  NISGAGASVSSALVSIALDGLSRVGINSFTLSGNGQTYTGTELSNGDLQTFSLRTNGLTS 120
            +   G++VSSA+VSIALDGLSR+GI+SFTLSGNG+T TGT L  GD QTFSLRT+GL++
Sbjct: 61  TVDAVGSAVSSAVVSIALDGLSRLGIDSFTLSGNGRTITGTPLLEGDTQTFSLRTDGLST 120

Query: 121 GLYTLSVAGTVLGSAGGSFAGNISVAPVPEASTTAMMIGGLGLIGFAAYRRRKAGDKGDK 180
           GLYTLSVAGT+LGS GGSFAGNISVAPVPEASTTAMM+GGLG+IGFAAYRRR+   +   
Sbjct: 121 GLYTLSVAGTILGSEGGSFAGNISVAPVPEASTTAMMLGGLGIIGFAAYRRRRKAGEDAP 180

Query: 181 AQMNAQMMPA 190
            Q N Q+MPA
Sbjct: 181 QQRNDQLMPA 190


>ref|YP_003049212.1| hypothetical protein Mmol_1781 [Methylotenera mobilis JLW8]
 gb|ACT48685.1| protein of unknown function DUF1555 [Methylotenera mobilis JLW8]
          Length = 162

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 15/172 (8%)

Query: 3   KLLSSFLVASAFVAMASSASAADLERTRTLVWTDATSTFNARFGDGTTGQ-TFLENFTFN 61
           KL+   L+ +A  A  S+A AA              S+    FG  +  + +F +   F+
Sbjct: 2   KLVKQLLIGAAIFAAVSNAQAATYN-------LGTLSSDYTEFGSYSVAKGSFSDTINFS 54

Query: 62  ISG-AGASVSSALVSIALDGLSRVGINSFTLSGNGQTYTGTELSNGDLQTFSLRTNGLTS 120
           ++G +        + + +  ++R+ I   TLS     + GT  ++  L         L +
Sbjct: 55  LAGTSDTDFGVGSIFVKVGKITRLDITGLTLS----LFKGT--TDLGLSGTDFSATALGA 108

Query: 121 GLYTLSVAGTVLGSAGGSFAGNISVAPVPEASTTAMMIGGLGLIGFAAYRRR 172
           G Y L V G   G+ GGS+AG I+V+PVPEA T AMM+ GLGL+GF A RRR
Sbjct: 109 GDYHLLVTGNATGTLGGSYAGGINVSPVPEADTYAMMLAGLGLMGFVARRRR 160