BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3750.p         (188 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776506.1| hypothetical protein Hsero_3114 [Herbaspiril...   160   8e-38
ref|YP_003049212.1| hypothetical protein Mmol_1781 [Methylotener...    60   1e-07

>ref|YP_003776506.1| hypothetical protein Hsero_3114 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64598.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 112/192 (58%), Positives = 141/192 (73%), Gaps = 6/192 (3%)

Query: 1   MKKLIGGVLLASALCSVGATASAAQINGTQALTFNNSSTTSYFGSEFGAGTTGKSFLENF 60
           MKKLIG +LLASA   + +TASAA +  T++L + ++++T  F + +G GTTG +FLENF
Sbjct: 1   MKKLIGSLLLASAFIGMASTASAADLERTRSLIWTDATST--FNARYGEGTTGLTFLENF 58

Query: 61  TFSYSSPFT-VSSAVISIALDGISRLNLNSLTLSGNGGTWTGVKTTVGSAQVFTLRTDGL 119
           TF+  +  + VSSAV+SIALDG+SRL ++S TLSGNG T TG     G  Q F+LRTDGL
Sbjct: 59  TFTVDAVGSAVSSAVVSIALDGLSRLGIDSFTLSGNGRTITGTPLLEGDTQTFSLRTDGL 118

Query: 120 SSGNYTLSVGGLVTGATGGSFGGNISIAAVPEASTVAMMLGGLALVGFAAYRRRRTEGN- 178
           S+G YTLSV G + G+ GGSF GNIS+A VPEAST AMMLGGL ++GFAAYRRRR  G  
Sbjct: 119 STGLYTLSVAGTILGSEGGSFAGNISVAPVPEASTTAMMLGGLGIIGFAAYRRRRKAGED 178

Query: 179 --AQAQDRLMPA 188
              Q  D+LMPA
Sbjct: 179 APQQRNDQLMPA 190


>ref|YP_003049212.1| hypothetical protein Mmol_1781 [Methylotenera mobilis JLW8]
 gb|ACT48685.1| protein of unknown function DUF1555 [Methylotenera mobilis JLW8]
          Length = 162

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 12/154 (7%)

Query: 24  AQINGTQALTFNNSSTTSYFGSEFGAGTTGKSFLE---NFTFSYSSPFTVSSAVISIALD 80
           A ++  QA T+N  + +S + +EFG+ +  K       NF+ + +S        I + + 
Sbjct: 15  AAVSNAQAATYNLGTLSSDY-TEFGSYSVAKGSFSDTINFSLAGTSDTDFGVGSIFVKVG 73

Query: 81  GISRLNLNSLTLS-GNGGTWTGVKTTVGSAQVFTLRTDGLSSGNYTLSVGGLVTGATGGS 139
            I+RL++  LTLS   G T  G+  T  SA         L +G+Y L V G  TG  GGS
Sbjct: 74  KITRLDITGLTLSLFKGTTDLGLSGTDFSAT-------ALGAGDYHLLVTGNATGTLGGS 126

Query: 140 FGGNISIAAVPEASTVAMMLGGLALVGFAAYRRR 173
           + G I+++ VPEA T AMML GL L+GF A RRR
Sbjct: 127 YAGGINVSPVPEADTYAMMLAGLGLMGFVARRRR 160