BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3744.p (376 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776499.1| permease [Herbaspirillum seropedicae SmR1] >... 666 0.0 ref|YP_004754165.1| hypothetical protein CFU_3518 [Collimonas fu... 477 e-132 ref|YP_001100651.1| hypothetical protein HEAR2399 [Herminiimonas... 451 e-124 ref|YP_001354149.1| hypothetical protein mma_2459 [Janthinobacte... 440 e-121 ref|ZP_04575897.1| permease YjgP/YjgQ family protein [Oxalobacte... 422 e-116 >ref|YP_003776499.1| permease [Herbaspirillum seropedicae SmR1] gb|ADJ64591.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 376 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 351/376 (93%), Positives = 363/376 (96%) Query: 1 MRVIQRYFTAEITRSVLFALAAFLALFAFFEMMGQLEQVGRNGYKLQQAVFYVLMGLPGN 60 MRVIQRYFT+EITRSVLFALAAFLALFAFFEMMGQLEQVGRNGYKLQQAVFYVLMGLPGN Sbjct: 1 MRVIQRYFTSEITRSVLFALAAFLALFAFFEMMGQLEQVGRNGYKLQQAVFYVLMGLPGN 60 Query: 61 VYELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTGMAAKVLLRIGVGFAVLTIVFGEL 120 VYELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTG AA+VL RIGVGFAVLTIVFGEL Sbjct: 61 VYELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTGQAARVLARIGVGFAVLTIVFGEL 120 Query: 121 IAPKASEWAEKLKLQAQGASMSSQFRSGMWAKDVIKDNGLEGNVTGSRFINIQTVQPDGR 180 IAPKA+EWAEKLKLQAQGAS+SSQFRSGMWAKDVI+D+GLEGNV GSRFINI+TVQPDGR Sbjct: 121 IAPKATEWAEKLKLQAQGASLSSQFRSGMWAKDVIRDHGLEGNVVGSRFINIRTVQPDGR 180 Query: 181 IEGVKLYELDTDFHMARMVVAKDGIYEGNHQWVLNDVVQSDFVGGKDRKITEPVKTVKLP 240 IEGVKLYELD+DFHMARMV AK G+Y+GNHQW L+DVVQSDF GG DRKITEPVKTVK Sbjct: 181 IEGVKLYELDSDFHMARMVTAKAGMYDGNHQWTLSDVVQSDFTGGSDRKITEPVKTVKSA 240 Query: 241 QLKLVSEVTPEILSVLFADPDRMSAYDLLAYTKHLEANNQRTDRYEIAFWKKIVYPLSIF 300 QL LVSEVTPEILSVLFADPDRMSAYDLLAYTKHLEANNQRTDRYEIAFWKKIVYPLSIF Sbjct: 241 QLTLVSEVTPEILSVLFADPDRMSAYDLLAYTKHLEANNQRTDRYEIAFWKKIVYPLSIF 300 Query: 301 VMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAFMTAALPSL 360 VMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAF+TAALPSL Sbjct: 301 VMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAFVTAALPSL 360 Query: 361 LFMVLAIGALWWVERT 376 LFM LA GALWWVERT Sbjct: 361 LFMALAAGALWWVERT 376 >ref|YP_004754165.1| hypothetical protein CFU_3518 [Collimonas fungivorans Ter331] gb|AEK63342.1| putative Membrane protein; putative permease [Collimonas fungivorans Ter331] Length = 379 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 246/379 (64%), Positives = 311/379 (82%), Gaps = 3/379 (0%) Query: 1 MRVIQRYFTAEITRSVLFALAAFLALFAFFEMMGQLEQVGRNGYKLQQAVFYVLMGLPGN 60 M+V+QRYFT+EI RSVLF LAAFLALFAFF++M +L VGR GYKLQ A F+VL+GLP Sbjct: 1 MKVLQRYFTSEIVRSVLFTLAAFLALFAFFDLMNELPSVGRGGYKLQHAFFFVLLGLPSY 60 Query: 61 VYELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTGMAAKVLLRIGVGFAVLTIVFGEL 120 YELMP A LIGTIYTLSQ AARSEFTIMRVSSMST M AK+L++IG+ F + T++ GE Sbjct: 61 AYELMPIAALIGTIYTLSQFAARSEFTIMRVSSMSTMMTAKILIKIGLLFVIATVLIGEF 120 Query: 121 IAPKASEWAEKLKLQAQGASMSSQFRSGMWAKDVIKD--NGLEGNVTGSRFINIQTVQPD 178 ++PK++E+AEK+KL+A+G+S+S +F++G+W+KDVI+ +G G++ GSRFINI ++PD Sbjct: 121 VSPKSAEFAEKVKLEARGSSISQKFKTGLWSKDVIRAGADGASGDIVGSRFINIGEIRPD 180 Query: 179 GRIEGVKLYELDTDFHMARMVVAKDGIYEGNHQWVLNDVVQSDFVGGKDRK-ITEPVKTV 237 G++ GVKLYE D + HM +++A Y+G H W + DVVQ+DFV G + IT + T Sbjct: 181 GQLVGVKLYEFDRNLHMTSLILAAHAEYQGKHTWRMADVVQTDFVNGTSTEDITTAIATK 240 Query: 238 KLPQLKLVSEVTPEILSVLFADPDRMSAYDLLAYTKHLEANNQRTDRYEIAFWKKIVYPL 297 K P LVSE+TPEILSVLFADPD MSAY+L +Y++HL NNQ T+RY+IAFWKK+VYPL Sbjct: 241 KFPSKDLVSEITPEILSVLFADPDHMSAYNLWSYSQHLAENNQHTERYDIAFWKKLVYPL 300 Query: 298 SIFVMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAFMTAAL 357 S+FVM+ALALPFAYLHFR GGVSLKIFTGIMIGV FQL+N+LFSHLGLLNTWP F TAAL Sbjct: 301 SVFVMMALALPFAYLHFRTGGVSLKIFTGIMIGVSFQLVNTLFSHLGLLNTWPPFFTAAL 360 Query: 358 PSLLFMVLAIGALWWVERT 376 PS +F+++AIGALW +ER+ Sbjct: 361 PSTIFLLIAIGALWKIERS 379 >ref|YP_001100651.1| hypothetical protein HEAR2399 [Herminiimonas arsenicoxydans] emb|CAL62530.1| putative permease [Herminiimonas arsenicoxydans] Length = 382 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 223/381 (58%), Positives = 291/381 (76%), Gaps = 6/381 (1%) Query: 1 MRVIQRYFTAEITRSVLFALAAFLALFAFFEMMGQLEQVGRNGYKLQQAVFYVLMGLPGN 60 M+++Q+YF AEI RSV+F L AFLALF FF+++ +L+ VG GYK+Q A+ +VL+ +PG Sbjct: 1 MKILQKYFAAEIGRSVIFVLIAFLALFGFFDLIAELKAVGHGGYKIQHALLFVLLSMPGY 60 Query: 61 VYELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTGMAAKVLLRIGVGFAVLTIVFGEL 120 +YELMP A LIGTI+TLSQ AARSEFTIMR SSMSTGMA +L++IG+ FA++T V GE Sbjct: 61 LYELMPIAALIGTIWTLSQFAARSEFTIMRASSMSTGMAGLMLIKIGLVFAIVTFVVGEF 120 Query: 121 IAPKASEWAEKLKLQAQGASMSSQFRSGMWAKDVIKDNGLEGNVTGSRFINIQTVQPDGR 180 + P +S AEK++ QG S+S +FRSG+W KD+I+ NG +G GSRF+N++TVQPDG+ Sbjct: 121 VVPASSNMAEKIRTLNQGGSLSQEFRSGLWTKDMIRSNGKDGEAIGSRFLNVRTVQPDGQ 180 Query: 181 IEGVKLYELDTDFHMARMVVAKDGIYEGNHQWVLNDVVQSDF------VGGKDRKITEPV 234 + +K+YE + +FH+ ++ A Y+G++ W+L++ Q++F IT + Sbjct: 181 LTDLKIYEFNRNFHLTALITAARADYQGDNVWLLSNGSQAEFGETELMGAAVATDITTAI 240 Query: 235 KTVKLPQLKLVSEVTPEILSVLFADPDRMSAYDLLAYTKHLEANNQRTDRYEIAFWKKIV 294 T L+SEVTPEILSV F+DP +MSAYDL+ YT++L NN+ T RYEIA WKK+V Sbjct: 241 STRNFASKPLISEVTPEILSVGFSDPAKMSAYDLVNYTQYLAENNRETARYEIALWKKVV 300 Query: 295 YPLSIFVMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAFMT 354 YP ++FVM+ALALPFAYLHFR+GGVSLKIFTGIMIGV FQLINSLFSHLGLLNTWP F T Sbjct: 301 YPFAVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVSFQLINSLFSHLGLLNTWPPFAT 360 Query: 355 AALPSLLFMVLAIGALWWVER 375 A LPSLLF++ AIGAL WVER Sbjct: 361 AILPSLLFLLAAIGALLWVER 381 >ref|YP_001354149.1| hypothetical protein mma_2459 [Janthinobacterium sp. Marseille] gb|ABR89987.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 382 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 224/381 (58%), Positives = 285/381 (74%), Gaps = 6/381 (1%) Query: 1 MRVIQRYFTAEITRSVLFALAAFLALFAFFEMMGQLEQVGRNGYKLQQAVFYVLMGLPGN 60 M+++Q+YF+ EI RSVLF L AFLALFAFF+++G+L+ VG GYK+Q A YV++ +PG Sbjct: 1 MKILQKYFSLEIGRSVLFVLIAFLALFAFFDLVGELKSVGHGGYKIQHAFLYVVLEMPGY 60 Query: 61 VYELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTGMAAKVLLRIGVGFAVLTIVFGEL 120 VYELMP A LIGTI+ LSQ AARSEFTIMR SSMST M +LL+IGV FA++T VFGE Sbjct: 61 VYELMPIAALIGTIWALSQFAARSEFTIMRASSMSTAMVGAILLKIGVVFALITFVFGEF 120 Query: 121 IAPKASEWAEKLKLQAQGASMSSQFRSGMWAKDVIKDNGLEGNVTGSRFINIQTVQPDGR 180 + P S AE++++ +QG ++S +FRSG+W KDVI+ NG EG V GSRF+N++ ++PDG+ Sbjct: 121 VVPITSNMAERIRVNSQGGALSQEFRSGLWTKDVIRSNGQEGEVLGSRFVNVRELRPDGK 180 Query: 181 IEGVKLYELDTDFHMARMVVAKDGIYEGNHQWVLNDVVQSDFVGGKDR------KITEPV 234 + +K+YE + +FH+ ++ A Y G + W LND + F K + IT + Sbjct: 181 LMNLKIYEFNRNFHLTSLITAGSADYAGANTWTLNDGTVAAFGESKLQGATTATDITTAI 240 Query: 235 KTVKLPQLKLVSEVTPEILSVLFADPDRMSAYDLLAYTKHLEANNQRTDRYEIAFWKKIV 294 T K LVSE+TPEILSV F DP MSA L+ YT++L NN+ T RYEIA WKK+V Sbjct: 241 STSKFKTQSLVSEMTPEILSVGFTDPATMSAIALVNYTQYLSENNRDTVRYEIALWKKVV 300 Query: 295 YPLSIFVMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAFMT 354 YP ++FVM+ALALPFAYLHFR+GGVSLKIFTGIMIGV FQLINSLFSHLGLLNTWP F T Sbjct: 301 YPFAVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVSFQLINSLFSHLGLLNTWPPFAT 360 Query: 355 AALPSLLFMVLAIGALWWVER 375 A LPSLLF+ +A+GAL WVER Sbjct: 361 AILPSLLFLTVAVGALMWVER 381 >ref|ZP_04575897.1| permease YjgP/YjgQ family protein [Oxalobacter formigenes HOxBLS] gb|EEO26859.1| permease YjgP/YjgQ family protein [Oxalobacter formigenes HOxBLS] Length = 382 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 208/381 (54%), Positives = 280/381 (73%), Gaps = 6/381 (1%) Query: 1 MRVIQRYFTAEITRSVLFALAAFLALFAFFEMMGQLEQVGRNGYKLQQAVFYVLMGLPGN 60 M+++QRYF ++I +SV+F L AFL LFAFF+++ +L VGR GY+L Y+L+G PG Sbjct: 1 MKILQRYFFSQIVKSVVFILVAFLGLFAFFDLISELSSVGRGGYQLHHVFVYILLGFPGY 60 Query: 61 VYELMPTAVLIGTIYTLSQLAARSEFTIMRVSSMSTGMAAKVLLRIGVGFAVLTIVFGEL 120 +YELMP AVLIGTIY ++ A+ SEFTIMRVSS+ST A +L ++G+ F V T + GE+ Sbjct: 61 IYELMPFAVLIGTIYAMALFASNSEFTIMRVSSLSTRDACWMLAKVGLVFLVFTFLVGEV 120 Query: 121 IAPKASEWAEKLKLQAQGASMSSQFRSGMWAKDVIKDNGLEGNVTGSRFINIQTVQPDGR 180 + P S A + + G ++S +FR+GMW+KD I++NG EG + GSRF+NI+T++PDG Sbjct: 121 LTPYTSRMASEFRNNLIGRNLSDKFRTGMWSKDTIRENGREGEIIGSRFMNIKTMRPDGT 180 Query: 181 IEGVKLYELDTDFHMARMVVAKDGIYEGNHQWVLNDVVQSDF-VGGKDRKITEP-----V 234 IE +KLYE + + + + V A++G Y GNH+W LN VV+S GK + P V Sbjct: 181 IEQIKLYEFNRELELVKTVTAQNGHYLGNHEWQLNGVVESLIKSSGKSKGKRFPDSAPVV 240 Query: 235 KTVKLPQLKLVSEVTPEILSVLFADPDRMSAYDLLAYTKHLEANNQRTDRYEIAFWKKIV 294 T K ++LVS+VTP+ILSV+ D ++MSAY+L Y +HL N Q Y+IAFWKKI+ Sbjct: 241 DTEKRDSIRLVSDVTPDILSVISVDANKMSAYELAVYNRHLVENKQDATSYQIAFWKKII 300 Query: 295 YPLSIFVMLALALPFAYLHFRAGGVSLKIFTGIMIGVCFQLINSLFSHLGLLNTWPAFMT 354 YP S+FVM+ALALPFAYLHFR+GGVSLKIFTGIMIGV F LIN+LFSH+GLLNTWP F+T Sbjct: 301 YPFSVFVMMALALPFAYLHFRSGGVSLKIFTGIMIGVAFILINNLFSHVGLLNTWPPFLT 360 Query: 355 AALPSLLFMVLAIGALWWVER 375 A +PS+LF++ A+ ALWWVER Sbjct: 361 AVIPSVLFLLSAVFALWWVER 381