BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3743.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776498.1| hypothetical protein Hsero_3106 [Herbaspiril...   180   6e-44
ref|YP_002231782.1| putative cobaltochelatase [Burkholderia ceno...   139   1e-31
ref|YP_621734.1| cobalamin (vitamin B12) biosynthesis CbiX prote...   139   1e-31
ref|YP_774408.1| cobalamin (vitamin B12) biosynthesis CbiX prote...   139   1e-31
ref|ZP_04940790.1| hypothetical protein BCPG_02267 [Burkholderia...   137   4e-31

>ref|YP_003776498.1| hypothetical protein Hsero_3106 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64590.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 101/117 (86%), Positives = 109/117 (93%)

Query: 7   QSLILFAHGARDPAWAAPFERLRALTQAAMPGTSVELAFLELMQPDLPTVAARQIATGSR 66
           QSLILFAHGARDPAWAAPFERLRALT+AAMP  SVELAFLELMQPDLP+V A+Q+A GS+
Sbjct: 2   QSLILFAHGARDPAWAAPFERLRALTRAAMPQASVELAFLELMQPDLPSVVAQQVAAGSQ 61

Query: 67  RVTVIPVFLGQGGHVRRDLPELLEQLRQAHPGVEVRTVAAVGEDEAVLQAIAAYCVG 123
           R+TVIPVFLGQGGHVRRDLP+LLEQLRQAHP  E+RTV AVGEDEAVLQAIAAYCV 
Sbjct: 62  RITVIPVFLGQGGHVRRDLPQLLEQLRQAHPQAEIRTVPAVGEDEAVLQAIAAYCVA 118


>ref|YP_002231782.1| putative cobaltochelatase [Burkholderia cenocepacia J2315]
 emb|CAR52980.1| putative cobaltochelatase [Burkholderia cenocepacia J2315]
          Length = 127

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/121 (60%), Positives = 85/121 (70%), Gaps = 1/121 (0%)

Query: 6   SQSLILFAHGARDPAWAAPFERLRA-LTQAAMPGTSVELAFLELMQPDLPTVAARQIATG 64
           S  ++LF HGARDP WA PFERL A L  A  P   V LAFLELM P L    A Q+A G
Sbjct: 3   SHGIVLFGHGARDPRWAEPFERLAARLRGAGSPAAQVSLAFLELMTPSLGDAVAAQVAAG 62

Query: 65  SRRVTVIPVFLGQGGHVRRDLPELLEQLRQAHPGVEVRTVAAVGEDEAVLQAIAAYCVGT 124
             R+TV+PVF GQGGHVRRDLP+L++  R AHPGVE+R   AVGED+ VL A+A YCVG 
Sbjct: 63  CTRITVVPVFFGQGGHVRRDLPQLVDACRAAHPGVEIRCATAVGEDDGVLDAVARYCVGQ 122

Query: 125 V 125
           +
Sbjct: 123 L 123


>ref|YP_621734.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia
           cenocepacia AU 1054]
 ref|YP_836112.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia
           cenocepacia HI2424]
 ref|YP_001765757.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia
           cenocepacia MC0-3]
 gb|ABF76761.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia
           cenocepacia AU 1054]
 gb|ABK09219.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia
           cenocepacia HI2424]
 gb|ACA91635.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia
           cenocepacia MC0-3]
          Length = 127

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/119 (60%), Positives = 85/119 (71%), Gaps = 1/119 (0%)

Query: 5   TSQSLILFAHGARDPAWAAPFERLRA-LTQAAMPGTSVELAFLELMQPDLPTVAARQIAT 63
           +S  ++LF HGARDP WA PFERL A L  A  P T V LAFLELM P L    A Q+A 
Sbjct: 2   SSHGIVLFGHGARDPRWAEPFERLAARLRGAGSPATHVSLAFLELMTPSLGEAVAAQVAA 61

Query: 64  GSRRVTVIPVFLGQGGHVRRDLPELLEQLRQAHPGVEVRTVAAVGEDEAVLQAIAAYCV 122
           G  R+TV+PVF GQGGHVRRDLP+L++  R AHPGVE+R   AVGED+ VL A+A YC+
Sbjct: 62  GCARITVVPVFFGQGGHVRRDLPQLVDACRAAHPGVEIRCATAVGEDDGVLDAVARYCI 120


>ref|YP_774408.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia
           ambifaria AMMD]
 gb|ABI88074.1| cobalamin (vitamin B12) biosynthesis CbiX protein [Burkholderia
           ambifaria AMMD]
          Length = 127

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/119 (59%), Positives = 84/119 (70%), Gaps = 1/119 (0%)

Query: 5   TSQSLILFAHGARDPAWAAPFERLRA-LTQAAMPGTSVELAFLELMQPDLPTVAARQIAT 63
           +S  ++LF HGARDP WA PFERL A L  +  P   V LAFLELM P L T  A Q+A 
Sbjct: 2   SSHGIVLFGHGARDPRWAEPFERLAARLRGSGAPAPHVSLAFLELMTPSLDTAVAAQVAA 61

Query: 64  GSRRVTVIPVFLGQGGHVRRDLPELLEQLRQAHPGVEVRTVAAVGEDEAVLQAIAAYCV 122
           G  R+TV+PVF GQGGHVRRDLP+L++  R AHP VE+R   AVGED+ VL AIA YC+
Sbjct: 62  GCTRITVVPVFFGQGGHVRRDLPQLVDACRAAHPNVEIRCATAVGEDDGVLDAIARYCI 120


>ref|ZP_04940790.1| hypothetical protein BCPG_02267 [Burkholderia cenocepacia PC184]
 gb|EAY63961.1| hypothetical protein BCPG_02267 [Burkholderia cenocepacia PC184]
          Length = 127

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/119 (59%), Positives = 84/119 (70%), Gaps = 1/119 (0%)

Query: 5   TSQSLILFAHGARDPAWAAPFERLRA-LTQAAMPGTSVELAFLELMQPDLPTVAARQIAT 63
           +S  ++LF HGARDP WA PFERL A L  A    T V LAFLELM P L    A Q+A 
Sbjct: 2   SSHGIVLFGHGARDPRWAEPFERLAARLRGAGSSATHVSLAFLELMTPSLGEAVAAQVAA 61

Query: 64  GSRRVTVIPVFLGQGGHVRRDLPELLEQLRQAHPGVEVRTVAAVGEDEAVLQAIAAYCV 122
           G  R+TV+PVF GQGGHVRRDLP+L++  R AHPGVE+R   AVGED+ VL A+A YC+
Sbjct: 62  GCARITVVPVFFGQGGHVRRDLPQLVDACRAAHPGVEIRCATAVGEDDGVLDAVARYCI 120