BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3733.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776490.1| permease [Herbaspirillum seropedicae SmR1] >... 361 6e-98 ref|YP_004754153.1| hypothetical protein CFU_3506 [Collimonas fu... 294 9e-78 ref|YP_001100643.1| hypothetical protein HEAR2391 [Herminiimonas... 293 2e-77 gb|ABW82977.1| permease [uncultured bacterium pEAF66] 290 2e-76 ref|YP_001354141.1| hypothetical protein mma_2451 [Janthinobacte... 289 3e-76 >ref|YP_003776490.1| permease [Herbaspirillum seropedicae SmR1] gb|ADJ64582.1| permease transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 257 Score = 361 bits (926), Expect = 6e-98, Method: Composition-based stats. Identities = 252/257 (98%), Positives = 256/257 (99%) Query: 1 MTVSYVVSGFAVGLLVGLTGVGGGSLMTPLLTLLFGIHPSVAVGTDLAFASATKTAGTLA 60 MTVSYVVSGFAVGLLVGLTGVGGGSLMTPLLTLLFGIHPSVAVGTDLAFASATKTAGTLA Sbjct: 1 MTVSYVVSGFAVGLLVGLTGVGGGSLMTPLLTLLFGIHPSVAVGTDLAFASATKTAGTLA 60 Query: 61 HRFKGTVRWDVVRRLSYGALPAALVTTLLLKHFGAVSDGIALTIRYSIAISVFLTVVALL 120 HRFKGTVRWDVVRRLSYGALPAAL+TTLLLKHFGAVSDGIALTIRYSIA+SVFLTV+ALL Sbjct: 61 HRFKGTVRWDVVRRLSYGALPAALITTLLLKHFGAVSDGIALTIRYSIAVSVFLTVIALL 120 Query: 121 FRARMQAWLNAHPQRQLQGATLANATIAAGALLGTLVTISSIGAGAVGATLLVLLYPRLS 180 FR+RMQAWLNAHPQRQLQGATLANATIAAGALLGTLVTISSIGAGAVGATLLVLLYPRLS Sbjct: 121 FRSRMQAWLNAHPQRQLQGATLANATIAAGALLGTLVTISSIGAGAVGATLLVLLYPRLS 180 Query: 181 PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELLVTLLLGSVPGITIGSLAARAVPEKFL 240 PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELL TLLLGSVPGITIGSLAARAVPEKFL Sbjct: 181 PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELLATLLLGSVPGITIGSLAARAVPEKFL 240 Query: 241 RGLLAITLTSVAVKLIW 257 RGLLAITLTSVAVKLIW Sbjct: 241 RGLLAITLTSVAVKLIW 257 >ref|YP_004754153.1| hypothetical protein CFU_3506 [Collimonas fungivorans Ter331] gb|AEK63330.1| hypothetical protein CFU_3506 [Collimonas fungivorans Ter331] Length = 257 Score = 294 bits (752), Expect = 9e-78, Method: Composition-based stats. Identities = 206/257 (80%), Positives = 228/257 (88%) Query: 1 MTVSYVVSGFAVGLLVGLTGVGGGSLMTPLLTLLFGIHPSVAVGTDLAFASATKTAGTLA 60 MTVSYVVSGFAVGLLVGLTGVGGGSLMTP+LTLLFGIHPSVAVGTDLAFAS TK AGT+A Sbjct: 1 MTVSYVVSGFAVGLLVGLTGVGGGSLMTPILTLLFGIHPSVAVGTDLAFASVTKVAGTVA 60 Query: 61 HRFKGTVRWDVVRRLSYGALPAALVTTLLLKHFGAVSDGIALTIRYSIAISVFLTVVALL 120 HR +GTVRWD+VR LS GALPAA+ T L LK+ G +S I IRYSIA+SV LTVVALL Sbjct: 61 HRSRGTVRWDIVRLLSLGALPAAVATALALKYLGGISAEIGQVIRYSIAVSVLLTVVALL 120 Query: 121 FRARMQAWLNAHPQRQLQGATLANATIAAGALLGTLVTISSIGAGAVGATLLVLLYPRLS 180 F+ ++Q WLNAHP++ LQG L ATI AG +LG LVT+SSIGAGAVGAT+LVLLYPRL+ Sbjct: 121 FKGKLQHWLNAHPEKHLQGRKLTAATIFAGLVLGALVTMSSIGAGAVGATILVLLYPRLT 180 Query: 181 PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELLVTLLLGSVPGITIGSLAARAVPEKFL 240 PAE+AGTDIAYAVPLTAIAALGHWWLGSI+W LL LLLGSVPGIT+GSLAARAVPEKFL Sbjct: 181 PAEVAGTDIAYAVPLTAIAALGHWWLGSIDWNLLGALLLGSVPGITLGSLAARAVPEKFL 240 Query: 241 RGLLAITLTSVAVKLIW 257 RGLLA+TLTSVAVKLI+ Sbjct: 241 RGLLALTLTSVAVKLIY 257 >ref|YP_001100643.1| hypothetical protein HEAR2391 [Herminiimonas arsenicoxydans] emb|CAL62522.1| Putative permease [Herminiimonas arsenicoxydans] Length = 257 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 196/257 (76%), Positives = 222/257 (86%) Query: 1 MTVSYVVSGFAVGLLVGLTGVGGGSLMTPLLTLLFGIHPSVAVGTDLAFASATKTAGTLA 60 M+VSY+VSGFAVGLLVGLTGVGGGSLMTPLLTLLFG+ P+VAVGTDLAFASATK AGT A Sbjct: 1 MSVSYIVSGFAVGLLVGLTGVGGGSLMTPLLTLLFGVSPTVAVGTDLAFASATKVAGTFA 60 Query: 61 HRFKGTVRWDVVRRLSYGALPAALVTTLLLKHFGAVSDGIALTIRYSIAISVFLTVVALL 120 HR++G V W +V+ L GALPAA++TTL LK+FG + I IRYSIA SV LTV+AL+ Sbjct: 61 HRYRGNVHWHIVKHLCLGALPAAVLTTLTLKYFGVLDQEIGQIIRYSIAGSVMLTVIALI 120 Query: 121 FRARMQAWLNAHPQRQLQGATLANATIAAGALLGTLVTISSIGAGAVGATLLVLLYPRLS 180 FR RMQ W+NAHP RQ+QG L ATI +GA+LGTLVTISSIGAGA+GAT+LVLLYPRL+ Sbjct: 121 FRTRMQHWMNAHPGRQIQGEKLVVATIVSGAILGTLVTISSIGAGAIGATILVLLYPRLT 180 Query: 181 PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELLVTLLLGSVPGITIGSLAARAVPEKFL 240 PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELL LLLGSVPGIT+GSL AR +PEK L Sbjct: 181 PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELLAMLLLGSVPGITLGSLVARTIPEKVL 240 Query: 241 RGLLAITLTSVAVKLIW 257 R LLA LT+VAVKL++ Sbjct: 241 RVLLASVLTTVAVKLVY 257 >gb|ABW82977.1| permease [uncultured bacterium pEAF66] Length = 257 Score = 290 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 187/257 (72%), Positives = 215/257 (83%) Query: 1 MTVSYVVSGFAVGLLVGLTGVGGGSLMTPLLTLLFGIHPSVAVGTDLAFASATKTAGTLA 60 M ++Y+VSGFAVGLLVG+TGVGGGSLMTPLLTL+FG+ PSVAVGTDLAFAS TK+AG Sbjct: 1 MLITYIVSGFAVGLLVGMTGVGGGSLMTPLLTLIFGVPPSVAVGTDLAFASITKSAGAFT 60 Query: 61 HRFKGTVRWDVVRRLSYGALPAALVTTLLLKHFGAVSDGIALTIRYSIAISVFLTVVALL 120 HR +GTVRWD+V+ L GALPAA+ T L LK +GA+ I IRYSIA SV LTVVAL+ Sbjct: 61 HRLRGTVRWDIVKLLCIGALPAAVATALALKQYGALDASIGQFIRYSIAGSVLLTVVALI 120 Query: 121 FRARMQAWLNAHPQRQLQGATLANATIAAGALLGTLVTISSIGAGAVGATLLVLLYPRLS 180 F+ +M AWLNAHP+RQLQG L AT+ AG LG LVTISSIGAGA+GATLLV+LYPRLS Sbjct: 121 FKGKMLAWLNAHPERQLQGRALDAATVFAGLGLGVLVTISSIGAGAIGATLLVMLYPRLS 180 Query: 181 PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELLVTLLLGSVPGITIGSLAARAVPEKFL 240 AE+AGTDIAYAVPLTAIAA GHWWLGSINW LL LL+GS+PGIT+GS A++VPEKFL Sbjct: 181 AAEVAGTDIAYAVPLTAIAAFGHWWLGSINWTLLAMLLVGSLPGITLGSWIAKSVPEKFL 240 Query: 241 RGLLAITLTSVAVKLIW 257 R LLA+TLT VA KLI+ Sbjct: 241 RVLLAMTLTGVAAKLIY 257 >ref|YP_001354141.1| hypothetical protein mma_2451 [Janthinobacterium sp. Marseille] gb|ABR90559.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 257 Score = 289 bits (739), Expect = 3e-76, Method: Composition-based stats. Identities = 191/257 (74%), Positives = 223/257 (86%) Query: 1 MTVSYVVSGFAVGLLVGLTGVGGGSLMTPLLTLLFGIHPSVAVGTDLAFASATKTAGTLA 60 M+V+Y+VSGFAVGLLVGLTGVGGGSLMTPLLTLLFG+ P+VAVGTDLAFAS TK AGT A Sbjct: 1 MSVTYIVSGFAVGLLVGLTGVGGGSLMTPLLTLLFGVSPTVAVGTDLAFASTTKIAGTFA 60 Query: 61 HRFKGTVRWDVVRRLSYGALPAALVTTLLLKHFGAVSDGIALTIRYSIAISVFLTVVALL 120 HR+KG V W++V++L GALPAA++TTL+LK+ G + I IRYSIA SV LTV+AL+ Sbjct: 61 HRYKGNVHWNIVKQLCIGALPAAVLTTLVLKYLGGLDKEIGQVIRYSIAGSVMLTVIALI 120 Query: 121 FRARMQAWLNAHPQRQLQGATLANATIAAGALLGTLVTISSIGAGAVGATLLVLLYPRLS 180 FR R+Q W++AHP RQ G L ATI +GA+LGTLVTISSIGAGA+GAT+LVLLYPRL+ Sbjct: 121 FRTRLQNWMSAHPNRQFHGKKLVTATIVSGAILGTLVTISSIGAGAIGATILVLLYPRLT 180 Query: 181 PAEIAGTDIAYAVPLTAIAALGHWWLGSINWELLVTLLLGSVPGITIGSLAARAVPEKFL 240 PAEIAGTDIAYAVPLTAIAALGHWWLGSI+WELL LLLGSVPGIT+GSLA+RA+PEK L Sbjct: 181 PAEIAGTDIAYAVPLTAIAALGHWWLGSIHWELLAMLLLGSVPGITLGSLASRAIPEKVL 240 Query: 241 RGLLAITLTSVAVKLIW 257 R LLA TLT+VA KL++ Sbjct: 241 RVLLATTLTTVAFKLVY 257