BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3722.p         (297 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776486.1| hypothetical protein Hsero_3094 [Herbaspiril...    88   2e-15
ref|YP_001354512.1| hypothetical protein mma_2822 [Janthinobacte...    80   5e-13

>ref|YP_003776486.1| hypothetical protein Hsero_3094 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64578.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 9/157 (5%)

Query: 1   MKKNIAAAVAAIAAMMAAGSVAAQTVDSGVYIGLEGGVASISSIATPTNGVKTSETNETG 60
           MKK    A + +  + AA S  +   D GVY+G+EGGV ++  +         SET+  G
Sbjct: 1   MKKMHMLAASILLVVSAAVSAQSANSDYGVYLGVEGGVGNMD-VDLDAGAAVLSETSNVG 59

Query: 61  ALRALVGYQINKNFAIELGYFATDDFKQDGTNRTGTVRYN-VKADVKGADLSVIYKFTEF 119
             RA +GY+ ++NFA+E GYF T  ++     + G  +Y+   A  KG DL++IY+ T+F
Sbjct: 60  VARAAIGYRFDRNFAVEAGYFHTGAYEL--KEQVGRGQYDHFSAKAKGFDLALIYRMTQF 117

Query: 120 VPGLYLKAGATRSKVSLELSQPSG-----TSSFSQTG 151
           +PGLY+K G   S VS  L +        + +FS++G
Sbjct: 118 LPGLYVKGGLIHSTVSGRLDEVQNQRVRESHTFSRSG 154


>ref|YP_001354512.1| hypothetical protein mma_2822 [Janthinobacterium sp. Marseille]
 gb|ABR91878.1| Hypothetical protein mma_2822 [Janthinobacterium sp. Marseille]
          Length = 195

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   NIAAAVAAIAAMMAAGSVAAQTVDSGVYIGLEGGVASISSIATPTNGVKTSETNETGALR 63
           +I   V A+ ++++A S A +      Y+GL+ G   +       N   TSET+     R
Sbjct: 2   SIKPLVFALLSVVSAVSFADENKAGKFYLGLDAGSGKVKKDPLTPNYRITSETDRVDGGR 61

Query: 64  ALVGYQINKNFAIELGYFATDDFKQDGTNRTGTVRYNVKADVKGADLSVIYKFTEFVPGL 123
             +GYQI    ++ELG     D+KQ  TN  G + YN + + K  DL++ YK  E +PGL
Sbjct: 62  LYIGYQITPKLSVELGAVRPSDYKQSATN--GVLSYNARVETKNHDLTLFYKVPELLPGL 119

Query: 124 YLKAGATRSKV 134
           ++  G T SKV
Sbjct: 120 FVLGGVTYSKV 130