BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3720.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08274308.1| Vitamin B12 ABC transporter, B12-binding comp... 300 2e-79 ref|YP_584924.1| vitamin B12 ABC transporter periplasmic-binding... 287 2e-75 ref|YP_004754132.1| Vitamin B12 ABC transporter B12-binding comp... 286 3e-75 ref|YP_294887.1| periplasmic binding protein [Ralstonia eutropha... 285 8e-75 ref|YP_001894644.1| periplasmic binding protein [Burkholderia ph... 280 2e-73 >ref|ZP_08274308.1| Vitamin B12 ABC transporter, B12-binding component BtuF [Oxalobacteraceae bacterium IMCC9480] gb|EGF32218.1| Vitamin B12 ABC transporter, B12-binding component BtuF [Oxalobacteraceae bacterium IMCC9480] Length = 292 Score = 300 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 166/289 (57%), Positives = 207/289 (71%), Gaps = 3/289 (1%) Query: 2 RALAAWLLSLTGLLAAGAAHASITVQDDLGQNVTLPQPARRIVSLAPHVTELLYAAGAGE 61 R L A LL+ +G LA A ++ DD G + L PARRI+SLAPHVTELL+AAGAG Sbjct: 3 RLLIALLLATSGALAEAAP---VSATDDAGHPIRLDAPARRIISLAPHVTELLFAAGAGA 59 Query: 62 QIVGASNHSDYPPQAARLPNLGGYNALDLERIASLKPDLVVAWHSGNKPLQLARLRSLGI 121 ++VG S++SD+PP A + ++GG ALD+ERI LKPDLVVAW SGN QLARLR+LGI Sbjct: 60 RLVGVSDYSDFPPAAKAIASVGGAAALDIERIVMLKPDLVVAWGSGNSASQLARLRALGI 119 Query: 122 PVFESQPADFGMIAASLEKLGHLAGSDSTAQAAATAFRARWQQLESQYRGRAPVSVFYQI 181 VF+S+P DF IA+SLE+L LAGS++T +AAA FRAR Q L + Y+ RA V VFYQI Sbjct: 120 TVFDSEPRDFAAIASSLERLATLAGSEATGRAAAIDFRARLQTLTTTYQQRASVPVFYQI 179 Query: 182 WSQPLMTLNGQHMVSSVLRLCGGRNIFTDLPQLAPTVSVESVLAADPQVILTAGDARDQP 241 W PLMTLNGQ MVS+ +RLCGG NIF LPQLAP + E+VL A+P+VILT GD Sbjct: 180 WRAPLMTLNGQSMVSTAIRLCGGNNIFAQLPQLAPVIGTEAVLQANPEVILTGGDDEAAA 239 Query: 242 LERWKAFPRLRAVRDGQLHTVNADWLNRAGPRVLEAAQEVCGKLDQARQ 290 L W+ FP L AV+ L +NADWL R+GPR+LE + +C +LD AR+ Sbjct: 240 LADWRRFPSLLAVQRNNLFVINADWLARSGPRLLEGTELLCRQLDTARR 288 >ref|YP_584924.1| vitamin B12 ABC transporter periplasmic-binding protein [Cupriavidus metallidurans CH34] gb|ABF09655.1| vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily Cobalamin-binding protein (BtuF) [Cupriavidus metallidurans CH34] Length = 300 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 152/276 (55%), Positives = 193/276 (69%), Gaps = 6/276 (2%) Query: 20 AHASITVQDDLGQNVTLPQPARRIVSLAPHVTELLYAAGAGEQIVGASNHSDYPPQAARL 79 AHA+++V DD G+ VTL QPARRIVSLAPHVTEL++AAG G++IVG ++SDYPPQA + Sbjct: 20 AHAAVSVVDDAGETVTLAQPARRIVSLAPHVTELIFAAGGGDRIVGTVSYSDYPPQARDI 79 Query: 80 PNLGGYNALDLERIASLKPDLVVAWHSGNKPLQLARLRSLGIPVFESQPADFGMIAASLE 139 P +G ALDLERIA+LKPDL+V W GN Q RLR+LG+P+F S+P IA +LE Sbjct: 80 PRVGDNKALDLERIAALKPDLIVVWRHGNAQKQTDRLRALGMPLFFSEPRKLDGIADNLE 139 Query: 140 KLGHLAGSDSTAQAAATAFRARWQQLESQYRGRAPVSVFYQIWSQPLMTLNGQHMVSSVL 199 KLG L G+ A AAT FR + L Y GR PV+VFYQ+W QPLMTLNG+HMVS +L Sbjct: 140 KLGTLMGTTPVAHRAATDFRQQVSTLRKTYAGRPPVTVFYQVWQQPLMTLNGEHMVSDLL 199 Query: 200 RLCGGRNIFTDLPQLAPTVSVESVLAADPQVILTAG---DARDQPL---ERWKAFPRLRA 253 LCGGRN+F L PTVSVE+V+A +P+V+LTAG D+PL W+ + ++ A Sbjct: 200 ALCGGRNLFGKEAALVPTVSVEAVVAGNPEVMLTAGMGATRSDKPLADFAMWEKWKQVTA 259 Query: 254 VRDGQLHTVNADWLNRAGPRVLEAAQEVCGKLDQAR 289 V L ++ D +NRAGPRV + A E+C LD AR Sbjct: 260 VARNNLFVIDGDLVNRAGPRVAQGAAEICKDLDVAR 295 >ref|YP_004754132.1| Vitamin B12 ABC transporter B12-binding component BtuF [Collimonas fungivorans Ter331] gb|AEK63309.1| Vitamin B12 ABC transporter, B12-binding component BtuF [Collimonas fungivorans Ter331] Length = 304 Score = 286 bits (731), Expect = 3e-75, Method: Composition-based stats. Identities = 151/263 (57%), Positives = 190/263 (72%), Gaps = 1/263 (0%) Query: 27 QDDLGQNVTLPQPARRIVSLAPHVTELLYAAGAGEQIVGASNHSDYPPQAARLPNLGGYN 86 +DD V L PA RIVSLAPH TELL+AAGAG +VG S++SDYPP+A ++ ++G + Sbjct: 39 RDDTQHAVVLHHPAHRIVSLAPHATELLFAAGAGAYVVGVSDYSDYPPEAKQITSMGSSS 98 Query: 87 ALDLERIASLKPDLVVAWHSGNKPLQLARLRSLGIPVFESQPADFGMIAASLEKLGHLAG 146 ALD+ERI +LKPDLVVAW SGN Q+ARLR++GIPVFES+P IAASL +L LAG Sbjct: 99 ALDIERIVALKPDLVVAWSSGNSASQIARLRAIGIPVFESEPRQLEAIAASLLRLSQLAG 158 Query: 147 SDSTAQAAATAFRARWQQLESQYRGRAPVSVFYQIWSQPLMTLNGQHMVSSVLRLCGGRN 206 ++ + AAA AF+ R QL++ YR R PV VFYQIW +PLMTLN HMVSSV+ LCGG N Sbjct: 159 TEDSGAAAADAFKTRLAQLDATYRQRPPVRVFYQIWKKPLMTLNDSHMVSSVIALCGGEN 218 Query: 207 IFTDLPQLAPTVSVESVLAADPQVILTAGDARDQPLERWKAFPRLRAVRDGQLHTVNADW 266 +F LPQLAPTVS E+VL ADP+VI A D P W+ FP+L A+ L T+ +W Sbjct: 219 VFGKLPQLAPTVSTEAVLQADPEVIF-AADGGSSPSAGWRRFPKLTAIAADNLFTLTPNW 277 Query: 267 LNRAGPRVLEAAQEVCGKLDQAR 289 ++R GPR+L+ A E+C KLD AR Sbjct: 278 MSRPGPRILDGAAELCQKLDLAR 300 >ref|YP_294887.1| periplasmic binding protein [Ralstonia eutropha JMP134] gb|AAZ60043.1| Periplasmic binding protein [Ralstonia eutropha JMP134] Length = 300 Score = 285 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 157/301 (52%), Positives = 207/301 (68%), Gaps = 10/301 (3%) Query: 1 MRALAAWLLSLTGLLAAGAAHASITVQDDLGQNVTLPQPARRIVSLAPHVTELLYAAGAG 60 +R +AA +L L+A A A+++ DD GQ VTL QPARR+VSLAPHVTELLYAAG G Sbjct: 4 VRQIAAAVL----LVATTQAMATVSAVDDAGQTVTLAQPARRVVSLAPHVTELLYAAGGG 59 Query: 61 EQIVGASNHSDYPPQAARLPNLGGYNALDLERIASLKPDLVVAWHSGNKPLQLARLRSLG 120 ++IVG ++SDYPPQA +P +G ALDLERIA+LKPDL+V W GN Q RLR+LG Sbjct: 60 DRIVGTVHYSDYPPQARDIPRVGDNKALDLERIAALKPDLIVVWRHGNAQKQTDRLRALG 119 Query: 121 IPVFESQPADFGMIAASLEKLGHLAGSDSTAQAAATAFRARWQQLESQYRGRAPVSVFYQ 180 +P+F S+P I +LEKLG L G+++TA AA FR R L Y + PV+VFYQ Sbjct: 120 LPLFYSEPRRLESIPDNLEKLGTLLGTEATAHRAADDFRQRVAALRKTYAAKPPVTVFYQ 179 Query: 181 IWSQPLMTLNGQHMVSSVLRLCGGRNIFTDLPQLAPTVSVESVLAADPQVILTAGDA--- 237 +W QPLMTLNGQH+VS +L LCGGRN+F + L PTVSVE+V+A +P+V+LTAG Sbjct: 180 VWQQPLMTLNGQHLVSDLLALCGGRNLFANESPLVPTVSVEAVVAGNPEVMLTAGTGATV 239 Query: 238 RDQPL---ERWKAFPRLRAVRDGQLHTVNADWLNRAGPRVLEAAQEVCGKLDQARQATSA 294 D+PL W+ + ++ AV G L T++ D + RAGPRV++ A+++C LD AR A Sbjct: 240 SDRPLADFAMWEKWKQVTAVARGNLFTIDGDLVTRAGPRVVQGAEQICKDLDTARSRRPA 299 Query: 295 Q 295 + Sbjct: 300 R 300 >ref|YP_001894644.1| periplasmic binding protein [Burkholderia phytofirmans PsJN] gb|ACD15420.1| periplasmic binding protein [Burkholderia phytofirmans PsJN] Length = 300 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 151/287 (52%), Positives = 197/287 (68%), Gaps = 6/287 (2%) Query: 9 LSLTGLLAAGAAHASITVQDDLGQNVTLPQPARRIVSLAPHVTELLYAAGAGEQIVGASN 68 L+ + A AHA+I+V DD G VTLP PA+R++SLAPHVTELLYAAG G ++VGA + Sbjct: 6 LAFALFITAHHAHAAISVTDDTGATVTLPAPAQRVISLAPHVTELLYAAGGGAKVVGAVS 65 Query: 69 HSDYPPQAARLPNLGGYNALDLERIASLKPDLVVAWHSGNKPLQLARLRSLGIPVFESQP 128 +SDYPP+A +LP +G ALDLERI +LKPDL+V W GN QL RLR + IP+F S+P Sbjct: 66 YSDYPPEAKQLPRVGDNKALDLERIVALKPDLIVVWRHGNAQRQLDRLREMHIPLFFSEP 125 Query: 129 ADFGMIAASLEKLGHLAGSDSTAQAAATAFRARWQQLESQYRGRAPVSVFYQIWSQPLMT 188 +A SL KLG L G+ STA AAA A+R +L +QY R PVSVFYQ+W QPLMT Sbjct: 126 HHLDDVAVSLTKLGQLLGTSSTADAAAAAYRQDIAKLRNQYASRPPVSVFYQVWDQPLMT 185 Query: 189 LNGQHMVSSVLRLCGGRNIFTDLPQLAPTVSVESVLAADPQVILTAGDARDQP------L 242 LNG+HMVS V+ LCGGRN+F L L PTVS E+VLAA+P+ I+TA +P L Sbjct: 186 LNGEHMVSDVIALCGGRNVFAKLEPLVPTVSTEAVLAANPEAIVTAAPGATKPDTTLPQL 245 Query: 243 ERWKAFPRLRAVRDGQLHTVNADWLNRAGPRVLEAAQEVCGKLDQAR 289 W+++P L AV + L ++ D +NR PR+ + A+++C L+ AR Sbjct: 246 GAWRSWPSLTAVANNNLFAIDGDLINRPAPRIAQGAKQMCEDLEAAR 292