BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3717.p         (67 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776483.1| hypothetical protein Hsero_3091 [Herbaspiril...   116   1e-24
ref|YP_001352797.1| hypothetical protein mma_1107 [Janthinobacte...    76   1e-12
ref|YP_004754129.1| hypothetical protein CFU_3482 [Collimonas fu...    76   2e-12
ref|YP_001099286.1| hypothetical protein HEAR0976 [Herminiimonas...    72   2e-11
ref|YP_294896.1| hypothetical protein Reut_A0670 [Ralstonia eutr...    71   4e-11

>ref|YP_003776483.1| hypothetical protein Hsero_3091 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64575.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 67

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/67 (98%), Positives = 67/67 (100%)

Query: 1  MLFGKKTTYVSEITQFIDELKTKNPKLEESQRAGRALLWDKEPLDLDKSARDKASRVAQQ 60
          MLFGKKTTYVSEITQFIDELKTKNPKLEESQRAGRALLWDKEPLDLDK+ARDKASRVAQQ
Sbjct: 1  MLFGKKTTYVSEITQFIDELKTKNPKLEESQRAGRALLWDKEPLDLDKTARDKASRVAQQ 60

Query: 61 PYVYQSH 67
          PYVYQSH
Sbjct: 61 PYVYQSH 67


>ref|YP_001352797.1| hypothetical protein mma_1107 [Janthinobacterium sp. Marseille]
 gb|ABR91720.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 70

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/62 (70%), Positives = 50/62 (80%)

Query: 5  KKTTYVSEITQFIDELKTKNPKLEESQRAGRALLWDKEPLDLDKSARDKASRVAQQPYVY 64
          + + Y SEITQFI  LK KNP LEESQRAGRALLWDK P+DLD+ AR KAS V+QQ YVY
Sbjct: 6  QHSNYQSEITQFISSLKEKNPNLEESQRAGRALLWDKSPIDLDQQARTKASNVSQQAYVY 65

Query: 65 QS 66
          Q+
Sbjct: 66 QN 67


>ref|YP_004754129.1| hypothetical protein CFU_3482 [Collimonas fungivorans Ter331]
 gb|AEK63306.1| hypothetical protein CFU_3482 [Collimonas fungivorans Ter331]
          Length = 69

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 1/68 (1%)

Query: 1  MLFGKKTT-YVSEITQFIDELKTKNPKLEESQRAGRALLWDKEPLDLDKSARDKASRVAQ 59
          M F K+   Y S+IT+F++ELK KNPKLEE Q AGRALLWDK P+DLD   R K SRV Q
Sbjct: 1  MTFSKQINGYQSDITKFVEELKQKNPKLEEQQLAGRALLWDKTPIDLDSQLRSKESRVDQ 60

Query: 60 QPYVYQSH 67
          QPYVYQ++
Sbjct: 61 QPYVYQNN 68


>ref|YP_001099286.1| hypothetical protein HEAR0976 [Herminiimonas arsenicoxydans]
 emb|CAL61159.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 70

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/67 (64%), Positives = 50/67 (74%), Gaps = 1/67 (1%)

Query: 1  MLFGKK-TTYVSEITQFIDELKTKNPKLEESQRAGRALLWDKEPLDLDKSARDKASRVAQ 59
          M F K+   Y SEITQFID LK KNP LE SQ AGRALLWDK P+DL++ AR++AS V Q
Sbjct: 1  MKFSKQHANYQSEITQFIDSLKAKNPNLEASQLAGRALLWDKSPIDLEQQARNQASHVDQ 60

Query: 60 QPYVYQS 66
          Q Y YQ+
Sbjct: 61 QAYPYQN 67


>ref|YP_294896.1| hypothetical protein Reut_A0670 [Ralstonia eutropha JMP134]
 gb|AAZ60052.1| hypothetical protein Reut_A0670 [Ralstonia eutropha JMP134]
          Length = 89

 Score = 71.2 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/56 (66%), Positives = 45/56 (80%)

Query: 9  YVSEITQFIDELKTKNPKLEESQRAGRALLWDKEPLDLDKSARDKASRVAQQPYVY 64
          Y SEITQF+  LK + P LE  QR GRALLWDKEP+DL++ +R +ASRVAQ+PYVY
Sbjct: 30 YESEITQFLKSLKQERPALETEQREGRALLWDKEPIDLEERSRAQASRVAQKPYVY 85