BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3713.p (430 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776479.1| sugar ABC transporter periplasmic protein [H... 780 0.0 ref|NP_891467.1| glycerol-3-phosphate ABC transporter substrate-... 579 e-163 ref|NP_879023.1| extracellular solute-binding protein [Bordetell... 577 e-162 ref|NP_886475.1| extracellular solute-binding protein [Bordetell... 575 e-162 ref|YP_003976210.1| extracellular solute-binding family protein ... 570 e-160 >ref|YP_003776479.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64571.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 430 Score = 780 bits (2013), Expect = 0.0, Method: Composition-based stats. Identities = 410/430 (95%), Positives = 421/430 (97%) Query: 1 MRRVILKSIAALAVAGAFAAPALAANPVEISFYYPVAVGGAVTKTIDSMVADFEKANPDI 60 MRR +LKS+AALAV+ AF P LAANPVEISFYYPVAVGGAVTKTIDSMVADFEKA+PDI Sbjct: 1 MRRTVLKSLAALAVSAAFCTPVLAANPVEISFYYPVAVGGAVTKTIDSMVADFEKAHPDI 60 Query: 61 KVKAIYAGTYQESIVKALTAFKGGTPPTLAVLLSTDLFTLIDENAIVPIDSLASSAEDKR 120 KVKAIYAGTYQESIVKALTAFKGGTPPTLAVLLSTDLFTLIDENAI+PIDSLASSAEDK+ Sbjct: 61 KVKAIYAGTYQESIVKALTAFKGGTPPTLAVLLSTDLFTLIDENAILPIDSLASSAEDKK 120 Query: 121 WIDGFYKGFMENSQTEGKTWGIPFQRSTIVMYYNKNLFKEAGLNPDKAPANWNEMVEAAK 180 WI GFYKGFMENSQTEGKTWGIPFQRSTIVMYYNK LFKEAGLNPDKAPANWNEMVEAAK Sbjct: 121 WIAGFYKGFMENSQTEGKTWGIPFQRSTIVMYYNKALFKEAGLNPDKAPANWNEMVEAAK 180 Query: 181 KLTKRDAAGNVSQWGVKIPSTGFGYWMFQAMTASNDTILMNSAGTKTYFDKPGAVQALQH 240 KLTKRDAAGNV+QWGVKIPSTGFGYWMFQAMTASNDT+LMNSAGTKTYFDKPGAVQALQH Sbjct: 181 KLTKRDAAGNVTQWGVKIPSTGFGYWMFQAMTASNDTLLMNSAGTKTYFDKPGAVQALQH 240 Query: 241 WVDLTTRDKVMPVGSIEWGTTPKDFLEQKAAMVWTTTGNLTNIRTNASFPFGVAMLPGIK 300 WVDLTT++KVMP GSIEWGTTPKDFLEQKAAMVWTTTGNLTNIRTNASFPFGVAMLPGIK Sbjct: 241 WVDLTTKEKVMPAGSIEWGTTPKDFLEQKAAMVWTTTGNLTNIRTNASFPFGVAMLPGIK 300 Query: 301 HPGSPTGGGNFYVFNKTSPAEQQAAMKFIRFATEPARAAQWSIATGYVAPRQDAWDTPEM 360 HPGSPTGGGNFYVFNKTSPAEQQAAMKFIRFATEPARAAQWSIATGYVAPRQDAWDTPEM Sbjct: 301 HPGSPTGGGNFYVFNKTSPAEQQAAMKFIRFATEPARAAQWSIATGYVAPRQDAWDTPEM 360 Query: 361 KKYLQDVPAADVAREQMKYGVAELSTHDNQRVTKALNDNLQAALSGTKTPEAALKDAQRE 420 KKYLQDVPAADVAREQMKYGVAELSTHDNQRVTKALNDNLQAALS TKTPEAALKDAQRE Sbjct: 361 KKYLQDVPAADVAREQMKYGVAELSTHDNQRVTKALNDNLQAALSDTKTPEAALKDAQRE 420 Query: 421 AERILRAYGR 430 AERILR+YGR Sbjct: 421 AERILRSYGR 430 >ref|NP_891467.1| glycerol-3-phosphate ABC transporter substrate-binding protein [Bordetella bronchiseptica RB50] emb|CAE35297.1| probable extracellular solute-binding protein [Bordetella bronchiseptica RB50] Length = 430 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 292/429 (68%), Positives = 346/429 (80%), Gaps = 1/429 (0%) Query: 1 MRRVILKSIAALAVAGAFAAPALAANPVEISFYYPVAVGGAVTKTIDSMVADFEKANPDI 60 MRR++LK++AA A PA A PVE+ FYYPVAVGG +TK +D MVADF K NPDI Sbjct: 1 MRRIVLKTLAAGLAGAFLALPAQAQQPVEVEFYYPVAVGGPITKIVDDMVADFHKENPDI 60 Query: 61 KVKAIYAGTYQESIVKALTAFKGGTPPTLAVLLSTDLFTLIDENAIVPIDSLASSAEDKR 120 ++K IYAGTYQ+SI KALTA KGGTPP LAVLLSTD+FTLIDE+AIVP+D LA S DK+ Sbjct: 61 RIKPIYAGTYQDSIAKALTALKGGTPPQLAVLLSTDMFTLIDEDAIVPVDGLAKSDADKK 120 Query: 121 WIDGFYKGFMENSQTEGKTWGIPFQRSTIVMYYNKNLFKEAGLNPDKAPANWNEMVEAAK 180 W+ GFY FM+NS+T G WG+PFQRSTIVMYYNK+LFKEAGL+P++APA W+E+VE K Sbjct: 121 WLGGFYDAFMQNSRTGGHVWGVPFQRSTIVMYYNKDLFKEAGLDPERAPATWDELVEYGK 180 Query: 181 KLTKRDAAGNVSQWGVKIPSTG-FGYWMFQAMTASNDTILMNSAGTKTYFDKPGAVQALQ 239 KLTK+DA GNVSQWGVKIPS G F YW+FQA+T ND ILMN G++ Y DKP V+A Q Sbjct: 181 KLTKKDANGNVSQWGVKIPSGGAFAYWLFQALTTPNDAILMNEEGSQVYLDKPAVVEAAQ 240 Query: 240 HWVDLTTRDKVMPVGSIEWGTTPKDFLEQKAAMVWTTTGNLTNIRTNASFPFGVAMLPGI 299 W DL+ + VMP G+I+WGTTPKDFLE+KAA+VWTTTGNLTNIR NA FPFGVAM+P Sbjct: 241 FWQDLSVKHGVMPKGTIDWGTTPKDFLEKKAAIVWTTTGNLTNIRKNADFPFGVAMMPKK 300 Query: 300 KHPGSPTGGGNFYVFNKTSPAEQQAAMKFIRFATEPARAAQWSIATGYVAPRQDAWDTPE 359 K GSPTGGGNFY+F +PA+QQAA+KF ++AT P RAA WSIATGYVA AW T Sbjct: 301 KRGGSPTGGGNFYIFKSGTPAQQQAALKFAQWATTPERAADWSIATGYVAVTPAAWQTER 360 Query: 360 MKKYLQDVPAADVAREQMKYGVAELSTHDNQRVTKALNDNLQAALSGTKTPEAALKDAQR 419 MKKY Q+VPAA VAR+Q++ VAE STH+NQRVTK LND LQAAL+G+KTP+ AL DAQR Sbjct: 361 MKKYAQEVPAATVARDQLEVSVAEFSTHENQRVTKVLNDALQAALTGSKTPQQALTDAQR 420 Query: 420 EAERILRAY 428 EA+R+LR+Y Sbjct: 421 EADRVLRSY 429 >ref|NP_879023.1| extracellular solute-binding protein [Bordetella pertussis Tohama I] emb|CAE40501.1| probable extracellular solute-binding protein [Bordetella pertussis Tohama I] gb|AEE65627.1| extracellular solute-binding protein [Bordetella pertussis CS] Length = 430 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 290/429 (67%), Positives = 346/429 (80%), Gaps = 1/429 (0%) Query: 1 MRRVILKSIAALAVAGAFAAPALAANPVEISFYYPVAVGGAVTKTIDSMVADFEKANPDI 60 MRR++LK++AA A PA A PVE+ FYYPVAVGG +TK +D MVADF K NPDI Sbjct: 1 MRRIVLKTLAAGLAGAFLALPAQAQQPVEVEFYYPVAVGGPITKIVDDMVADFHKENPDI 60 Query: 61 KVKAIYAGTYQESIVKALTAFKGGTPPTLAVLLSTDLFTLIDENAIVPIDSLASSAEDKR 120 ++K IYAGTYQ+SI KALTA KGGTPP LAVLLSTD+FTLIDE+AIVP+D LA S DK+ Sbjct: 61 RIKPIYAGTYQDSIAKALTALKGGTPPQLAVLLSTDMFTLIDEDAIVPVDGLAKSDADKK 120 Query: 121 WIDGFYKGFMENSQTEGKTWGIPFQRSTIVMYYNKNLFKEAGLNPDKAPANWNEMVEAAK 180 W+ GFY FM+NS+T G WG+PFQRSTIVMYYNK+LFKEAGL+P++APA W+E+VE K Sbjct: 121 WLGGFYDAFMQNSRTGGHVWGVPFQRSTIVMYYNKDLFKEAGLDPERAPATWDELVEYGK 180 Query: 181 KLTKRDAAGNVSQWGVKIPSTG-FGYWMFQAMTASNDTILMNSAGTKTYFDKPGAVQALQ 239 KLTK+DA GNVSQWG+KIPS G F YW+FQA+T ND ILMN G++ Y DKP V+A Q Sbjct: 181 KLTKKDANGNVSQWGIKIPSGGAFAYWLFQALTTPNDAILMNEEGSQVYLDKPAVVEAAQ 240 Query: 240 HWVDLTTRDKVMPVGSIEWGTTPKDFLEQKAAMVWTTTGNLTNIRTNASFPFGVAMLPGI 299 W DL+ + VMP G+I+WGTTPKDFLE+KAA+VWTTTGNLTNIR NA FPFGVAM+P Sbjct: 241 FWQDLSVKHGVMPKGTIDWGTTPKDFLEKKAAIVWTTTGNLTNIRKNADFPFGVAMMPKK 300 Query: 300 KHPGSPTGGGNFYVFNKTSPAEQQAAMKFIRFATEPARAAQWSIATGYVAPRQDAWDTPE 359 K GSPTGGGNFY+F +PA+QQAA+KF ++AT P RAA WSIATGYVA AW T Sbjct: 301 KRGGSPTGGGNFYIFKSGTPAQQQAALKFAQWATTPERAADWSIATGYVAVTPAAWQTER 360 Query: 360 MKKYLQDVPAADVAREQMKYGVAELSTHDNQRVTKALNDNLQAALSGTKTPEAALKDAQR 419 MKKY Q+VPAA +AR+Q++ VAE STH+NQRVTK LND LQAAL+G+KTP+ AL DAQR Sbjct: 361 MKKYAQEVPAATMARDQLEVSVAEFSTHENQRVTKVLNDALQAALTGSKTPQQALTDAQR 420 Query: 420 EAERILRAY 428 EA+R+LR+Y Sbjct: 421 EADRVLRSY 429 >ref|NP_886475.1| extracellular solute-binding protein [Bordetella parapertussis 12822] emb|CAE39626.1| probable extracellular solute-binding protein [Bordetella parapertussis] Length = 430 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 290/429 (67%), Positives = 344/429 (80%), Gaps = 1/429 (0%) Query: 1 MRRVILKSIAALAVAGAFAAPALAANPVEISFYYPVAVGGAVTKTIDSMVADFEKANPDI 60 MRR++LK++AA A PA A PVE+ FYYPVAVGG +TK +D MVADF K NPDI Sbjct: 1 MRRIVLKTLAAGLAGAFLALPAQAQQPVEVEFYYPVAVGGPITKIVDDMVADFHKENPDI 60 Query: 61 KVKAIYAGTYQESIVKALTAFKGGTPPTLAVLLSTDLFTLIDENAIVPIDSLASSAEDKR 120 ++K IYAGTYQ+SI KALTA KGGTPP LAVLLSTD+FTLIDE+AIVP+D LA S DK+ Sbjct: 61 RIKPIYAGTYQDSIAKALTALKGGTPPQLAVLLSTDMFTLIDEDAIVPVDGLAKSDADKK 120 Query: 121 WIDGFYKGFMENSQTEGKTWGIPFQRSTIVMYYNKNLFKEAGLNPDKAPANWNEMVEAAK 180 W+ GFY M+NS+T G WG+PFQRSTIVMYYNK+LFKEAGL+P++APA W+E+VE K Sbjct: 121 WLGGFYDAVMQNSRTGGHVWGVPFQRSTIVMYYNKDLFKEAGLDPERAPATWDELVEYGK 180 Query: 181 KLTKRDAAGNVSQWGVKIPSTG-FGYWMFQAMTASNDTILMNSAGTKTYFDKPGAVQALQ 239 KLTK+DA GNVSQWGVKIPS G F YW+FQA+T ND ILMN G++ Y DKP V+A Q Sbjct: 181 KLTKKDANGNVSQWGVKIPSGGAFAYWLFQALTTPNDAILMNEEGSQVYLDKPAVVEAAQ 240 Query: 240 HWVDLTTRDKVMPVGSIEWGTTPKDFLEQKAAMVWTTTGNLTNIRTNASFPFGVAMLPGI 299 W DL+ + VMP G+I+WGTTPKDFLE+KAA+VWTTTGNLTNIR NA FPFGVAM+P Sbjct: 241 FWQDLSVKHGVMPKGTIDWGTTPKDFLEKKAAIVWTTTGNLTNIRKNADFPFGVAMMPKK 300 Query: 300 KHPGSPTGGGNFYVFNKTSPAEQQAAMKFIRFATEPARAAQWSIATGYVAPRQDAWDTPE 359 K GSPTGGGNFY+F +PA+QQAA+KF ++AT P RA WSIATGYVA AW T Sbjct: 301 KRGGSPTGGGNFYIFKSGTPAQQQAALKFAQWATTPERATDWSIATGYVAVTPAAWQTER 360 Query: 360 MKKYLQDVPAADVAREQMKYGVAELSTHDNQRVTKALNDNLQAALSGTKTPEAALKDAQR 419 MKKY Q+VPAA VAR+Q++ VAE STH+NQRVTK LND LQAAL+G+KTP+ AL DAQR Sbjct: 361 MKKYAQEVPAATVARDQLEVSVAEFSTHENQRVTKVLNDALQAALTGSKTPQQALTDAQR 420 Query: 420 EAERILRAY 428 EA+R+LR+Y Sbjct: 421 EADRVLRSY 429 >ref|YP_003976210.1| extracellular solute-binding family protein [Achromobacter xylosoxidans A8] gb|ADP13495.1| bacterial extracellular solute-binding family protein 2 [Achromobacter xylosoxidans A8] Length = 431 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 291/430 (67%), Positives = 349/430 (81%), Gaps = 2/430 (0%) Query: 1 MRRVILKSIAALAVAGAFAAPALAAN-PVEISFYYPVAVGGAVTKTIDSMVADFEKANPD 59 MRR++LK++AA A + PA A N PVE+ FYYPVAVGG +TK +D MVADF+K NPD Sbjct: 1 MRRIVLKTLAASLAAACLSLPAQAQNKPVEVEFYYPVAVGGPITKIVDDMVADFQKENPD 60 Query: 60 IKVKAIYAGTYQESIVKALTAFKGGTPPTLAVLLSTDLFTLIDENAIVPIDSLASSAEDK 119 IK+K IYAG+YQ+SI KALTA KGGTPP LAVLLSTD+FTLIDE+AIVPIDSLA S DK Sbjct: 61 IKIKPIYAGSYQDSIAKALTALKGGTPPQLAVLLSTDMFTLIDEDAIVPIDSLAKSDADK 120 Query: 120 RWIDGFYKGFMENSQTEGKTWGIPFQRSTIVMYYNKNLFKEAGLNPDKAPANWNEMVEAA 179 +W+ GFY FM+NS++ G TWG+PFQRSTIVMYYNKNLFK AGL+P++APA W E+VE Sbjct: 121 KWLGGFYDAFMQNSRSGGHTWGVPFQRSTIVMYYNKNLFKAAGLDPERAPATWAELVEYG 180 Query: 180 KKLTKRDAAGNVSQWGVKIPSTG-FGYWMFQAMTASNDTILMNSAGTKTYFDKPGAVQAL 238 KKLTK+DA+GN +QWG++IPS G F YW+FQA+T N ILMN AG + Y DKP V+A Sbjct: 181 KKLTKQDASGNTTQWGIEIPSGGAFAYWLFQALTTPNGAILMNEAGNEVYLDKPAVVEAA 240 Query: 239 QHWVDLTTRDKVMPVGSIEWGTTPKDFLEQKAAMVWTTTGNLTNIRTNASFPFGVAMLPG 298 Q+W DL+ + K+MP G+I+WGTTPKDFLE+KAA+VWTTTGNLTNIR NA FPFGVAM+P Sbjct: 241 QYWRDLSAKHKIMPTGTIDWGTTPKDFLEKKAAIVWTTTGNLTNIRKNADFPFGVAMMPQ 300 Query: 299 IKHPGSPTGGGNFYVFNKTSPAEQQAAMKFIRFATEPARAAQWSIATGYVAPRQDAWDTP 358 K GSPTGGGNFY+F +PA+QQAA+KF ++ T P RAA WSIATGYVA AW T Sbjct: 301 QKRGGSPTGGGNFYIFKSGTPAQQQAALKFAQWVTTPERAADWSIATGYVAVTPAAWQTE 360 Query: 359 EMKKYLQDVPAADVAREQMKYGVAELSTHDNQRVTKALNDNLQAALSGTKTPEAALKDAQ 418 +MKKY Q+VPAA VAR+Q++ VAE STH+NQRVTK LND LQAAL+G+KTP+ AL DAQ Sbjct: 361 KMKKYAQEVPAAAVARDQLEVSVAEFSTHENQRVTKTLNDALQAALTGSKTPQQALTDAQ 420 Query: 419 REAERILRAY 428 REA+RILR Y Sbjct: 421 READRILRPY 430