BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3712.p (350 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum... 558 e-157 ref|YP_003976211.1| sn-glycerol-3-phosphate import ATP-binding p... 441 e-122 gb|EFV84756.1| sugar ABC transporter [Achromobacter xylosoxidans... 433 e-119 ref|ZP_06685254.1| ABC superfamily ATP binding cassette transpor... 432 e-119 gb|EGP46438.1| sn-glycerol-3-phosphate import ATP-binding protei... 430 e-118 >ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ64570.1| ABC-type sugar transport systems, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 349 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 292/350 (83%), Positives = 311/350 (88%), Gaps = 5/350 (1%) Query: 1 MAAISLQGVCKHWGQAQAVSNIDFEVKSGQFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 MAAISLQGVCKHWG+AQAV NIDFEVK+GQFTVLLGPSGCGKSTTLRLIAGLDKP+SGSI Sbjct: 1 MAAISLQGVCKHWGEAQAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSI 60 Query: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGHESRLQRVADI 120 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAG+E+RL+RVADI Sbjct: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADI 120 Query: 121 LGLSHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL+HLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ Sbjct: 121 LGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 Query: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN Sbjct: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 Query: 241 LLPLSNSAAGLVIEGSNGPVIHPHNVDEEWQLGVRPEHIHLV---GQGIAATVDTIEYFG 297 LLPL A GLVI GS+ VI WQLG+RPEHI L + A V+T+EYFG Sbjct: 241 LLPLEPHAEGLVISGSD--VILRDLGQTPWQLGLRPEHIRLADASDSSVPAVVETVEYFG 298 Query: 298 ADTIVGCRVGQASLLMRVPGQLTLVPGDAIQLGWERGNQYFFDRKSGLRR 347 ADTI+G R+G ASLL+R PGQ L GD ++L W+ +QYFFD SGLRR Sbjct: 299 ADTIIGARIGAASLLVRAPGQHRLGAGDPVRLAWDARDQYFFDPASGLRR 348 >ref|YP_003976211.1| sn-glycerol-3-phosphate import ATP-binding protein UgpC 1 [Achromobacter xylosoxidans A8] gb|ADP13496.1| sn-glycerol-3-phosphate import ATP-binding protein UgpC 1 [Achromobacter xylosoxidans A8] Length = 351 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 228/346 (65%), Positives = 273/346 (78%), Gaps = 2/346 (0%) Query: 1 MAAISLQGVCKHWGQAQAVSNIDFEVKSGQFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 M++I L + K +G A A+ + F V +G FTVLLGPSGCGKSTTLR+IAGLD PTSG+I Sbjct: 1 MSSIVLDNLTKQYGNAAAIHGVSFTVPAGSFTVLLGPSGCGKSTTLRMIAGLDTPTSGTI 60 Query: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGHESRLQRVADI 120 HIG RDVTQLPPA+R+ISMVFQSYALFPHLSVR+NILFG++VRKEP ++ RLQRVAD+ Sbjct: 61 HIGDRDVTQLPPAKRRISMVFQSYALFPHLSVRENILFGLKVRKEPARDYDRRLQRVADL 120 Query: 121 LGLSHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGLSHLL+R+P+QLSGGQQQRVALGRA+I++APVCLMDEPLSNLDAQLR EMRREIRALQ Sbjct: 121 LGLSHLLDRKPSQLSGGQQQRVALGRAVISEAPVCLMDEPLSNLDAQLRHEMRREIRALQ 180 Query: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 Q L +TMVYVTHDQTEAMSMADQV+LLR G+IEQ P LYA+PAT FAARFIGTPPMN Sbjct: 181 QDLGITMVYVTHDQTEAMSMADQVVLLRGGKIEQHDTPDALYARPATEFAARFIGTPPMN 240 Query: 241 LLPLSNSAAGLVIEGSNGPVIHPHNVDEEWQLGVRPEHIHLVGQGIAATVDTIEYFGADT 300 L+ L++ VI G++G +LGVRPEHI + GIAA V+++EYFGAD+ Sbjct: 241 LIGLASLQGATVIAGTHG-PAIAGAPAGAMKLGVRPEHIRIDPNGIAAKVESVEYFGADS 299 Query: 301 IVGCRVGQAS-LLMRVPGQLTLVPGDAIQLGWERGNQYFFDRKSGL 345 IV CRVG S + +RV G L G+ + L W+ G Q+FF S + Sbjct: 300 IVVCRVGDTSGVAVRVGGHLRASAGETLGLSWQDGQQHFFAADSAV 345 >gb|EFV84756.1| sugar ABC transporter [Achromobacter xylosoxidans C54] Length = 351 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 225/346 (65%), Positives = 272/346 (78%), Gaps = 2/346 (0%) Query: 1 MAAISLQGVCKHWGQAQAVSNIDFEVKSGQFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 M++I L + K +G A A+ + F V +G FTVLLGPSGCGKSTTLR+IAGLD PTSG+I Sbjct: 1 MSSIVLDNLTKQYGGAAAIHGVSFTVPAGSFTVLLGPSGCGKSTTLRMIAGLDTPTSGTI 60 Query: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGHESRLQRVADI 120 IG RDVTQLPPA+R+ISMVFQSYALFPHLSVR+NILFG++VRKEP ++ RLQRVA + Sbjct: 61 RIGDRDVTQLPPAKRRISMVFQSYALFPHLSVRENILFGLKVRKEPARDYDRRLQRVASL 120 Query: 121 LGLSHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL HLL+R+P+QLSGGQQQRVALGRA+I++APVCLMDEPLSNLDAQLR EMRREIRALQ Sbjct: 121 LGLGHLLDRKPSQLSGGQQQRVALGRAVISEAPVCLMDEPLSNLDAQLRHEMRREIRALQ 180 Query: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 Q L +TMVYVTHDQTEAMSMADQV+LLR G+IEQ P LYA+PA+ FAARFIGTPPMN Sbjct: 181 QDLGITMVYVTHDQTEAMSMADQVVLLRGGQIEQHDTPDGLYARPASEFAARFIGTPPMN 240 Query: 241 LLPLSNSAAGLVIEGSNGPVIHPHNVDEEWQLGVRPEHIHLVGQGIAATVDTIEYFGADT 300 L+ L VI G++GP I + +LGVRPEHI + GIAATV+++EYFGAD+ Sbjct: 241 LIKLMPLQGATVIAGTHGPAI-AGAPEGAAKLGVRPEHIRIDSDGIAATVESVEYFGADS 299 Query: 301 IVGCRVGQA-SLLMRVPGQLTLVPGDAIQLGWERGNQYFFDRKSGL 345 IV CR+G + + +RV G L G+A++L W Q+FF S + Sbjct: 300 IVVCRIGDSGGIAVRVGGHLRARAGEALRLSWPAEQQHFFAADSAV 345 >ref|ZP_06685254.1| ABC superfamily ATP binding cassette transporter, ABC protein [Achromobacter piechaudii ATCC 43553] gb|EFF77871.1| ABC superfamily ATP binding cassette transporter, ABC protein [Achromobacter piechaudii ATCC 43553] Length = 351 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 228/346 (65%), Positives = 273/346 (78%), Gaps = 2/346 (0%) Query: 1 MAAISLQGVCKHWGQAQAVSNIDFEVKSGQFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 M++I L + K +G A A+ + F V +G FTVLLGPSGCGKSTTLR+IAGLD PTSG+I Sbjct: 1 MSSIVLDNLTKQYGSAAAIHGVSFTVPAGSFTVLLGPSGCGKSTTLRMIAGLDTPTSGTI 60 Query: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGHESRLQRVADI 120 IG RDVTQLPPA+R+ISMVFQSYALFPHLSVR+NILFG++VRKEP E RLQRVA + Sbjct: 61 RIGERDVTQLPPAKRRISMVFQSYALFPHLSVRENILFGLKVRKEPARDFERRLQRVASL 120 Query: 121 LGLSHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL HLL+R+P+QLSGGQQQRVALGRA+I++APVCLMDEPLSNLDAQLR EMRREIRALQ Sbjct: 121 LGLGHLLDRKPSQLSGGQQQRVALGRAVISEAPVCLMDEPLSNLDAQLRHEMRREIRALQ 180 Query: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 Q L +TMVYVTHDQTEAMSMADQV+LLR G+IEQ P LYA+PA+ FAARFIGTPPMN Sbjct: 181 QDLGITMVYVTHDQTEAMSMADQVVLLRGGQIEQHDTPDGLYARPASEFAARFIGTPPMN 240 Query: 241 LLPLSNSAAGLVIEGSNGPVIHPHNVDEEWQLGVRPEHIHLVGQGIAATVDTIEYFGADT 300 L+ L+ ++ VI G+ GPVI + +LGVRPEHI + GI A V+++EYFGAD+ Sbjct: 241 LIGLAAASGAAVIAGTQGPVI-ANAPAGAVKLGVRPEHIRIDSAGIPAIVESVEYFGADS 299 Query: 301 IVGCRVGQAS-LLMRVPGQLTLVPGDAIQLGWERGNQYFFDRKSGL 345 IV CRVG S + +RV G L G+A+ L W+ G Q+FF S + Sbjct: 300 IVVCRVGDTSGVAVRVGGHLRARAGEALGLSWQDGQQHFFAADSAV 345 >gb|EGP46438.1| sn-glycerol-3-phosphate import ATP-binding protein UgpC 1 [Achromobacter xylosoxidans AXX-A] Length = 351 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 225/348 (64%), Positives = 271/348 (77%), Gaps = 6/348 (1%) Query: 1 MAAISLQGVCKHWGQAQAVSNIDFEVKSGQFTVLLGPSGCGKSTTLRLIAGLDKPTSGSI 60 M++I L + K +G A A+ + F V +G FTVLLGPSGCGKSTTLR+IAGLD PTSG+I Sbjct: 1 MSSIVLDNLTKQYGGAAAIHGVSFTVPAGSFTVLLGPSGCGKSTTLRMIAGLDTPTSGTI 60 Query: 61 HIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGHESRLQRVADI 120 IG RDVTQLPPA+R+ISMVFQSYALFPHLSVR+NILFG+RVR+EP ++ RLQRVA + Sbjct: 61 RIGDRDVTQLPPAKRRISMVFQSYALFPHLSVRENILFGLRVRREPARDYDRRLQRVASL 120 Query: 121 LGLSHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQ 180 LGL HLL+R+P+QLSGGQQQRVALGRA+I++APVCLMDEPLSNLDAQLR EMRREIRALQ Sbjct: 121 LGLVHLLDRKPSQLSGGQQQRVALGRAVISEAPVCLMDEPLSNLDAQLRHEMRREIRALQ 180 Query: 181 QQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMN 240 Q L +TMVYVTHDQTEAMSMADQV+LLR G+IEQ P LYA+PA+ FAARFIGTPPMN Sbjct: 181 QDLGITMVYVTHDQTEAMSMADQVVLLRGGQIEQHDTPDGLYARPASEFAARFIGTPPMN 240 Query: 241 LLPLSNSAAGLVIEGSNGPVI--HPHNVDEEWQLGVRPEHIHLVGQGIAATVDTIEYFGA 298 L+ L VI G++GP I P +LGVRPEHI + G G ATV+++EYFGA Sbjct: 241 LINLMPLQGATVIAGTHGPAIAGAPQGAA---KLGVRPEHIRIDGDGFPATVESVEYFGA 297 Query: 299 DTIVGCRVGQA-SLLMRVPGQLTLVPGDAIQLGWERGNQYFFDRKSGL 345 D+IV CR+G + + +RV G L G+A++L W Q+FF S + Sbjct: 298 DSIVVCRIGDSGGVAVRVGGHLRARAGEALRLSWPDEQQHFFAADSAV 345