BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3711.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776477.1| SorC family transcription regulator protein ... 612 e-173 ref|YP_002787781.1| transcriptional regulator, DeoR family [Dein... 296 3e-78 ref|YP_004255872.1| transcriptional regulator, DeoR family [Dein... 287 2e-75 ref|YP_003805228.1| DeoR family transcriptional regulator [Spiro... 280 2e-73 ref|YP_004169996.1| DeoR family transcriptional regulator [Deino... 280 2e-73 >ref|YP_003776477.1| SorC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64569.1| SorC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 318/326 (97%), Positives = 323/326 (99%) Query: 1 MAQGDRQETAYMAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHD 60 MAQGDRQETAYMAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHD Sbjct: 1 MAQGDRQETAYMAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHD 60 Query: 61 PQQVSGSLEAAIAHHYRLRSIQVVPVAAAATDKETLQRVTCHAAAYVNSLVTPGTVIGLA 120 PQQVSGSLEAAIA+HYRL SIQVVPVAAAATDKETLQRVTCHAAAYVNSLVTPGT+IGLA Sbjct: 61 PQQVSGSLEAAIANHYRLHSIQVVPVAAAATDKETLQRVTCHAAAYVNSLVTPGTIIGLA 120 Query: 121 WGTTVAQIADQLLPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVP 180 WGTTVAQIADQLLPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVP Sbjct: 121 WGTTVAQIADQLLPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVP 180 Query: 181 AFFDYPETRTALWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILRD 240 AFFDYPETRTALWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILRD Sbjct: 181 AFFDYPETRTALWREKSIKAIRDLQERASILLFSIGAEATGSYIHTAGYLGEEERQILRD 240 Query: 241 EGLVGDIATVFFRADGSWRDVAFNARNSGPDMECFARAAHSLCVVSGTGKLPGLKAALRG 300 EGLVGDIATVFFRADGSWRDVAFNARNSGPDM+CF RAAH+LCVVSG GKLPGLKAALRG Sbjct: 241 EGLVGDIATVFFRADGSWRDVAFNARNSGPDMDCFTRAAHALCVVSGAGKLPGLKAALRG 300 Query: 301 GFINELIIDEPSARLLVEQIRSGAAA 326 GFINELIIDEPSARLLVEQIR+GAAA Sbjct: 301 GFINELIIDEPSARLLVEQIRNGAAA 326 >ref|YP_002787781.1| transcriptional regulator, DeoR family [Deinococcus deserti VCD115] gb|ACO47679.1| putative transcriptional regulator, DeoR family [Deinococcus deserti VCD115] Length = 350 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 150/312 (48%), Positives = 207/312 (66%), Gaps = 2/312 (0%) Query: 8 ETAYMAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVSGS 67 ++ +AV++ARLYY Q +TT AIA E+G SR VSRLL+ A GLVEIR+HDPQ S Sbjct: 37 DSGALAVQIARLYYHQGLTTDAIARELGLSRPKVSRLLTLARRTGLVEIRIHDPQAQPQS 96 Query: 68 LEAAIAHHYRLRSIQVVPVAAAATDKETLQRVTCHAAAYVNSLVTPGTVIGLAWGTTVAQ 127 LEA + Y + VV V +++ L RV +A +++L+ P V+GLAWG T+ Sbjct: 97 LEAQLRSAYPGLTPHVVGVPPGSSEAVWLDRVAVASARLLDTLLRPQQVVGLAWGNTLDA 156 Query: 128 IADQLLPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPAFFDYPE 187 ++ L PRHV D+ V LNGS F++ F ++RFAQNY ARAH PVP FFD P Sbjct: 157 VSRMLTPRHVADLQFVQLNGSAHARDFMSGFVTDTITRFAQNYSARAHLFPVPTFFDDPA 216 Query: 188 TRTALWREKSIKAIRDLQERASILLFSIGAEATG--SYIHTAGYLGEEERQILRDEGLVG 245 T+TA+WRE+S++ + +LQERA +LL+S+G G S++H GYL E++Q L +G+VG Sbjct: 217 TKTAMWRERSVRHVVELQERADVLLYSVGTLDPGSPSHVHVGGYLDPEDQQTLLTQGVVG 276 Query: 246 DIATVFFRADGSWRDVAFNARNSGPDMECFARAAHSLCVVSGTGKLPGLKAALRGGFINE 305 DIATVF+R DGS+ D+ NAR SGPD+ R H++C+VSG K+ L+ AL GG +N Sbjct: 277 DIATVFYRGDGSFADIPINARASGPDLTLTTRVTHAVCIVSGLAKVDALRGALNGGLMNT 336 Query: 306 LIIDEPSARLLV 317 LI+DE +AR L+ Sbjct: 337 LIVDEITARTLL 348 >ref|YP_004255872.1| transcriptional regulator, DeoR family [Deinococcus proteolyticus MRP] gb|ADY26255.1| transcriptional regulator, DeoR family [Deinococcus proteolyticus MRP] Length = 324 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 151/311 (48%), Positives = 201/311 (64%), Gaps = 2/311 (0%) Query: 12 MAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVSGSLEAA 71 +AV+VARLYY Q +TT IA E+G SR VSRLL +A E GLVEIR+HDP SL Sbjct: 9 LAVQVARLYYHQGLTTGEIAAELGLSRPKVSRLLGYARESGLVEIRIHDPAAHPRSLAGQ 68 Query: 72 IAHHYRLRSIQVVPVAAAATDKETLQRVTCHAAAYVNSLVTPGTVIGLAWGTTVAQIADQ 131 + H+ +QV PV + + + L RV AA ++SL+ G +GLAWG TV ++ Sbjct: 69 LQDHFPGVQVQVTPVPPGSAEDDWLPRVAQATAALLDSLLRGGMTVGLAWGNTVDAVSHA 128 Query: 132 LLPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPAFFDYPETRTA 191 L PR + +D V LNGS + ++ F V+RFA+NYG RAH PVP FFD P T+ Sbjct: 129 LTPRRLGGLDFVQLNGSANIQELVSGFVTDTVTRFARNYGGRAHLFPVPTFFDDPHTKEM 188 Query: 192 LWREKSIKAIRDLQERASILLFSIGAEAT--GSYIHTAGYLGEEERQILRDEGLVGDIAT 249 +WRE+S++ + DLQ RA +LL+S+G+ S+++ AG L ++ L G+VGDIAT Sbjct: 189 MWRERSVRQVLDLQARADLLLYSVGSPVAERPSHVYAAGSLDGADQAELSRLGVVGDIAT 248 Query: 250 VFFRADGSWRDVAFNARNSGPDMECFARAAHSLCVVSGTGKLPGLKAALRGGFINELIID 309 VFFRADGSW D+ NAR SGPD+ A S+CVVSG GK+P L AALRGG + LI+D Sbjct: 249 VFFRADGSWEDLPINARASGPDLALIAAHPQSVCVVSGLGKVPALHAALRGGLMKRLIVD 308 Query: 310 EPSARLLVEQI 320 EP+A L+EQ+ Sbjct: 309 EPTALALLEQV 319 >ref|YP_003805228.1| DeoR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gb|ADK82634.1| transcriptional regulator, DeoR family [Spirochaeta smaragdinae DSM 11293] Length = 327 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 140/317 (44%), Positives = 215/317 (67%), Gaps = 3/317 (0%) Query: 7 QETAYM-AVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVS 65 QE+ Y A++VA LYY+ +TT AIA E+ SR VSRLLS A + G+VEIR+ + + Sbjct: 4 QESIYQEALQVATLYYYHGLTTEAIAKEMNFSRPKVSRLLSHARQSGMVEIRIVNVENKL 63 Query: 66 GSLEAAIAHHYRLRSIQVVPVAAAATDKETLQRVTCHAAAYVNSLVTPGTVIGLAWGTTV 125 LE +I H+ L ++ +VPV + L+ V +AA Y+N ++ PG + +AWGTT+ Sbjct: 64 LPLEQSIKDHFGLENVHIVPVPKLLGEMVWLEYVAQYAANYLNEILEPGCTLAVAWGTTI 123 Query: 126 AQIADQLLPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPAFFDY 185 ++IA L+P+ + + +V +NGSG+ + N ++ +I+ +F++NY A PVP FFDY Sbjct: 124 SEIAVHLIPKRMPGITIVQMNGSGNTYTPDNRYAANILQKFSENYEASYLLFPVPTFFDY 183 Query: 186 PETRTALWREKSIKAIRDLQERASILLFSIGAEATG--SYIHTAGYLGEEERQILRDEGL 243 ET+ AL+RE+SIK I + Q A ILL+S+GA G S+I+++GYL E+ Q L ++G+ Sbjct: 184 RETKEALFRERSIKKIIETQNNADILLYSVGAVDAGVPSHIYSSGYLEPEDIQSLEEQGV 243 Query: 244 VGDIATVFFRADGSWRDVAFNARNSGPDMECFARAAHSLCVVSGTGKLPGLKAALRGGFI 303 VGD+ATVFFR +G+++D+ N R SGP +E + +A ++CVVSG K+ GL AALR G++ Sbjct: 244 VGDLATVFFRENGTYKDIPINQRASGPSLELYKKAPRAICVVSGRAKIHGLHAALRAGYV 303 Query: 304 NELIIDEPSARLLVEQI 320 ELI+DEP+A LL +++ Sbjct: 304 KELIVDEPTAHLLWQRM 320 >ref|YP_004169996.1| DeoR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gb|ADV66331.1| transcriptional regulator, DeoR family [Deinococcus maricopensis DSM 21211] Length = 320 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 146/313 (46%), Positives = 206/313 (65%), Gaps = 2/313 (0%) Query: 9 TAYMAVRVARLYYFQNMTTAAIADEIGTSRATVSRLLSFALERGLVEIRVHDPQQVSGSL 68 T +AV+VARLYY+Q +TT AIA E+G SR VSRLL+ A GLVEIR+HDP +L Sbjct: 7 TNALAVQVARLYYYQGLTTDAIAQELGLSRPKVSRLLTHARRAGLVEIRIHDPSAHPQAL 66 Query: 69 EAAIAHHYRLRSIQVVPVAAAATDKETLQRVTCHAAAYVNSLVTPGTVIGLAWGTTVAQI 128 E + Y + VV V +T+ L+RV H A +++ + P V+GLAWG T+A + Sbjct: 67 EGDLRSAYPFLTPHVVSVPPGSTEDVWLERVAQHTAQVLSNTLRPRHVVGLAWGNTLAAV 126 Query: 129 ADQLLPRHVHDVDVVALNGSGSGASFINSFSESIVSRFAQNYGARAHHLPVPAFFDYPET 188 + L PR V D+ V LNGS S +N F + R A+NY ARA+ PVP FFD P T Sbjct: 127 SRALTPRSVPDLTFVQLNGSASPLDLMNGFVTDTLQRLARNYDARAYLFPVPTFFDDPHT 186 Query: 189 RTALWREKSIKAIRDLQERASILLFSIGA--EATGSYIHTAGYLGEEERQILRDEGLVGD 246 + A+WRE+S++ + +LQ+RA +LL+S+G+ T S+++ YL + + L+ +G+VGD Sbjct: 187 KAAMWRERSVQHVLELQDRADVLLYSVGSTNARTPSHVYAGAYLDPADLEALQRDGVVGD 246 Query: 247 IATVFFRADGSWRDVAFNARNSGPDMECFARAAHSLCVVSGTGKLPGLKAALRGGFINEL 306 IATVFFRADG+ +V NAR SGPD+ R H++CVVSG GK+ L+AALRG +N L Sbjct: 247 IATVFFRADGTHANVPMNARASGPDLTLMTRVPHAICVVSGLGKVEALRAALRGRLMNTL 306 Query: 307 IIDEPSARLLVEQ 319 ++DEP+AR L+++ Sbjct: 307 VVDEPTARALLQE 319