BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3704.p         (305 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003744011.1| hypothetical protein RCFBP_10039 [Ralstonia ...    99   7e-19

>ref|YP_003744011.1| hypothetical protein RCFBP_10039 [Ralstonia solanacearum CFBP2957]
 emb|CBJ41357.1| protein of unknown function [Ralstonia solanacearum CFBP2957]
          Length = 323

 Score = 99.4 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 88/287 (30%), Positives = 135/287 (47%), Gaps = 22/287 (7%)

Query: 10  SEFRRTLLDALSSSLQQHDQPRLYLLYAPELNDPLSLAEADALLPLLIQPAFTAAQRWAL 69
           + FR+ +L  L+    +     LYLLY P  +DPL L+        +++ +       A 
Sbjct: 4   TAFRQAVLQHLTVLRTRWPDGGLYLLYVPGEDDPLRLSGNQPRTQAIVRQSMLNDIDEAF 63

Query: 70  NKLPRLIQLVGLAGGRGTGETDNPIDDPLLEASITQSYAETVLGQRVNVLHANDDPGQAE 129
             LPR+I L          ETD  +DDPLLEASI       ++G R           +  
Sbjct: 64  --LPRVITLDCRRVAAYLLETDAALDDPLLEASIA------LVGSR-----GGQGGEETS 110

Query: 130 RAVCGWIIAPDEPATLCRRINAASVGVRKD----GQRRWIAWYIPECLQTLWPMLAPDQR 185
            AVCGWI + D+  T+ RR+   S  VR+     G+   + W+ P  L  +WP L  +QR
Sbjct: 111 YAVCGWIASADDAGTIARRL---SDSVRRSDPRIGRIVRLRWHDPRVLSQMWPQLPAEQR 167

Query: 186 LALAG-EATWLFHDDLGQLQSIAGVEAGEGASIRPQPQGFPLDDVQWQRLDHLPIVQRLL 244
           +AL G +  W+  + +GQ+ ++    A + A  +  P     D  QW RL ++ +V RLL
Sbjct: 168 VALLGTQLAWVAINAVGQV-AVFDAGAEKVAIDQSNPPLLVPDAAQWNRLHNVALVNRLL 226

Query: 245 AQWRDLCLDTAMAFGEHPLQRLHAQVSRARQFGLDGENLSLCVLTAM 291
             WR+    T  A  +  +  LH  V++A +  LDG +    VL A+
Sbjct: 227 ELWRERLRATGGALPQDAVDVLHRHVAQALRHKLDGRDAQTYVLVAL 273