BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3701.p         (356 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774178.1| hypothetical protein Hsero_0751 [Herbaspiril...    63   6e-08
ref|YP_003774179.1| hypothetical protein Hsero_0752 [Herbaspiril...    61   3e-07
ref|YP_003774181.1| hypothetical protein Hsero_0754 [Herbaspiril...    58   3e-06

>ref|YP_003774178.1| hypothetical protein Hsero_0751 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62270.1| hypothetical protein Hsero_0751 [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 29/201 (14%)

Query: 162 RYAPILFDRAAGKVHVFTDRTSLFSLLPLWGGGKYDIQSYDWSCTRVQVCRSRVVTKNHA 221
           R  P+ F+R   K++V+ + T+    L  W   + +I+ YDW     ++ +    T    
Sbjct: 55  RDTPVRFNRNTRKIYVY-EYTASLRRLQRW---RKEIKIYDWDNIEAEIAKVSGFTGKAY 110

Query: 222 QVLASLHCVVIKGPKDDTVIAQFPLGGTVSSLAVQLLLNQWEHIRRFMQHEGPLLNEGEQ 281
            V   L  V+ K   ++ VI +  L G  + + V+ L   W ++RRFM + GP      +
Sbjct: 111 VVRHELVLVICKAGTNE-VIDRISLKG--NDVTVETLYQLWSYVRRFMAY-GPARIPDLK 166

Query: 282 VYVPHGSSLLRALCWCQPLIGP---GR----------YPFTFLMVLAQLFALCFLWFTIP 328
             V  G S + +L    P I P   GR          YP  FL +        F W  +P
Sbjct: 167 ARV-QGVSFVSSLFHFMPYISPTEEGRRFRSKMRWLDYPIIFLTIW-------FFWIWLP 218

Query: 329 YGLLGWVCYHLKSKPKWPAEI 349
            G+  ++      +PKWPAEI
Sbjct: 219 LGICNYIAMKCAPEPKWPAEI 239


>ref|YP_003774179.1| hypothetical protein Hsero_0752 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62271.1| hypothetical protein Hsero_0752 [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 29/201 (14%)

Query: 162 RYAPILFDRAAGKVHVFTDRTSLFSLLPLWGGGKYDIQSYDWSCTRVQVCRSRVVTKNHA 221
           R  P+ F+R   K++ +  + SL   L  W   + +I+ YDW     ++ +    T    
Sbjct: 123 RDTPVRFNRNTRKIYAYEYKASL-QRLQRW---RTEIKIYDWDQVEAEIAKVSASTGKTY 178

Query: 222 QVLASLHCVVIKGPKDDTVIAQFPLGGTVSSLAVQLLLNQWEHIRRFMQHEGPLLNEGEQ 281
            V   L  V+ K   ++ VI +  L G  + + V+ L   W +IRRFM + GP       
Sbjct: 179 VVRHELVLVICKAGTNE-VIDRIALKG--NDVTVETLYQLWSYIRRFMAY-GPARIPELT 234

Query: 282 VYVPHGSSLLRALCWCQPLIGP---GR----------YPFTFLMVLAQLFALCFLWFTIP 328
           V V  G  L+  L    P I P   GR          YP  FL +        F W  +P
Sbjct: 235 VRV-QGVGLVSCLFHFMPYISPTEEGRRFRSKMRWLDYPIIFLTIW-------FFWIWLP 286

Query: 329 YGLLGWVCYHLKSKPKWPAEI 349
            G+  ++      +P WPAE+
Sbjct: 287 LGICHYIAMKCAPEPHWPAEV 307


>ref|YP_003774181.1| hypothetical protein Hsero_0754 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62273.1| hypothetical protein Hsero_0754 [Herbaspirillum seropedicae SmR1]
          Length = 321

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 27/264 (10%)

Query: 96  GGASITGLMTFTALFASPGFFLHLSVTLNDLLSGRIDLFLDSVGII-VLIILGLMIWC-- 152
           GG   TGL+ F+       F   + + L   +  +    +  +G++ V+++LG+ +W   
Sbjct: 59  GGGLFTGLIFFS-------FVGTVIIPLISTIGLQFFTLIPLLGVLAVVMLLGISVWAFF 111

Query: 153 AVRFDISGYRYAPILFDRAAGKVHVFTDRTSLFSLLPLWGGGKYDIQSYDWSCTRVQVCR 212
            + +D    R  P+ F+R   KV+ +    SL S    W     +++ YDWSC   +V +
Sbjct: 112 LIIYDCRLPRDTPVRFNRNTQKVYSYEYAASLSSF-KRW---HKEVKVYDWSCVEAEVAK 167

Query: 213 SRVVTKNHAQVLASLHCVVIKGPKDDTVIAQFPLG-GTVSSLAVQLLLNQWEHIRRFMQH 271
               +     V   LH V+ K P    VI +  L    V+ L    L  +W ++RRFM  
Sbjct: 168 FSGFSGKAYIVRYELHLVIGK-PGTHEVIDRIALKRNDVTGLT---LYERWSYLRRFMAD 223

Query: 272 EGPLLNEGEQVYVPHGSSLLRALCWCQPLIGPG------RYPFTFLMVLAQLFALCFLWF 325
               L + E      G   L++L    P + P       R    ++     L  + F W 
Sbjct: 224 GTGRLPKLEVRQQELG--FLKSLFSYMPYLSPTDEGRRYRKKMRWVDYCLALVLVWFFWL 281

Query: 326 TIPYGLLGWVCYHLKSKPKWPAEI 349
            +P GL  +V       P+WP ++
Sbjct: 282 WLPLGLCHYVAMRCAPAPQWPPDL 305