BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3698.p (417 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776471.1| FAD-dependent monooxygenase [Herbaspirillum ... 691 0.0 ref|YP_004142428.1| FAD dependent oxidoreductase [Mesorhizobium ... 487 e-135 ref|YP_004612186.1| FAD dependent oxidoreductase [Mesorhizobium ... 477 e-132 ref|NP_103006.1| FAD-dependent monooxygenase [Mesorhizobium loti... 467 e-129 ref|YP_002544891.1| glutamate synthase small subunit protein [Ag... 395 e-107 >ref|YP_003776471.1| FAD-dependent monooxygenase [Herbaspirillum seropedicae SmR1] gb|ADJ64563.1| FAD-dependent monooxygenase protein [Herbaspirillum seropedicae SmR1] Length = 417 Score = 691 bits (1783), Expect = 0.0, Method: Composition-based stats. Identities = 363/417 (87%), Positives = 385/417 (92%) Query: 1 MKSMHVAIAGAGPAGLAMALYLKRAGHRVTLLERFVTAAPVGSGLILQPTGLTVLEDLGL 60 M +HVAIAGAGPAGLAMALYLKRAGHRV+LLERF+ AAPVGSGLILQPTGLTVL+DLGL Sbjct: 1 MTPLHVAIAGAGPAGLAMALYLKRAGHRVSLLERFLQAAPVGSGLILQPTGLTVLQDLGL 60 Query: 61 FSRIAALGQRIDRLYGADARSGKPVLDVRYDAVRGGRYGIAVHRAALFGVLQEAAQREGI 120 FSRIAALGQRIDRLYGADA SGK VLDVRYDA+ GGRYGIAVHRAALFGVL EAAQ+EGI Sbjct: 61 FSRIAALGQRIDRLYGADALSGKTVLDVRYDAIAGGRYGIAVHRAALFGVLLEAAQQEGI 120 Query: 121 EAETGHEINGLEQGSAGASLSTADGRRIGPFDLVIDASGARSLLRHHALNTCEPKRLPYG 180 E ETG +I LE A A L+ ADGRRIG FDLVIDASGARS LR HAL++CEP+ LPYG Sbjct: 121 EVETGQDIGNLEHTGAQACLTAADGRRIGGFDLVIDASGARSPLRRHALHSCEPRPLPYG 180 Query: 181 AFWVSLRAQPGLSFGVNSLVQRYRRASTMIGVLPIGRPRLQDDPMVAFFWSTKPDQVEQI 240 AFWVSLRAQPGLSFG NSLVQRYRRASTMIGVLPIGRP QD+PMVAFFWST+PD+VE + Sbjct: 181 AFWVSLRAQPGLSFGHNSLVQRYRRASTMIGVLPIGRPTPQDEPMVAFFWSTRPDRVESL 240 Query: 241 KQRGLQAWKEGVHALWPECEPYLAQIDGFEQMTLARYGHHTLPSPYGQRLAIIGDAAHST 300 KQ GL AWK+GVHALWPEC PYLAQIDGFEQMTLARYGHHTLP PYG+RLAIIGDAAHST Sbjct: 241 KQAGLSAWKDGVHALWPECAPYLAQIDGFEQMTLARYGHHTLPLPYGERLAIIGDAAHST 300 Query: 301 SPQLGQGANMALLDARALIHALQQSDTLQQALPRYAASRRRHVRTFQAMSAMFTPFYQSD 360 SPQLGQGANMALLDARAL HALQQS+TL+QALPRYAASRRRHVRTFQAMSAMFTPFYQSD Sbjct: 301 SPQLGQGANMALLDARALSHALQQSETLEQALPRYAASRRRHVRTFQAMSAMFTPFYQSD 360 Query: 361 SVWLPWVRDQLAARLSVVPPAPQMLARMVAGTLVDPFTSIGLQERDWNIAPQPSALG 417 SVWLPWVRDQLAARLSVVPPAPQ+LARMVAGTLVDPFTSIGL+E DW+ APQPSALG Sbjct: 361 SVWLPWVRDQLAARLSVVPPAPQLLARMVAGTLVDPFTSIGLREHDWHAAPQPSALG 417 >ref|YP_004142428.1| FAD dependent oxidoreductase [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV12378.1| FAD dependent oxidoreductase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 431 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 266/405 (65%), Positives = 310/405 (76%), Gaps = 3/405 (0%) Query: 3 SMHVAIAGAGPAGLAMALYLKRAGHRVTLLERFVTAAPVGSGLILQPTGLTVLEDLGLFS 62 S +AIAGAGPAGLAMALYLKRAGHRVT+ ERF PVGSGLILQPTGLTVL DLGL Sbjct: 24 SYDIAIAGAGPAGLAMALYLKRAGHRVTVFERFDEPKPVGSGLILQPTGLTVLADLGLLD 83 Query: 63 RIAALGQRIDRLYGADARSGKPVLDVRYDAVRGGRYGIAVHRAALFGVLQEAAQREGIEA 122 + ALG RIDRL+GADA +G+ VLDVRYDA RGGR+G+AVHRAALFGVL AAQRE I Sbjct: 84 DMLALGSRIDRLHGADATTGRTVLDVRYDAQRGGRFGLAVHRAALFGVLFRAAQREAIAI 143 Query: 123 ETGHEINGLEQGSAGASLSTADGRRIGPFDLVIDASGARSLLRHHALNTCEPKRLPYGAF 182 ETG EI LE G +L +GRR GPFDLVIDASG+RS LR A EP+ L YGAF Sbjct: 144 ETGVEIEALETGER-TTLICGNGRRAGPFDLVIDASGSRSKLRG-ASAAGEPRPLTYGAF 201 Query: 183 WVSLRAQPGLSFGVNSLVQRYRRASTMIGVLPIGRPRLQDDPMVAFFWSTKPDQVEQIKQ 242 W SL + G F +L+QRY RAS MIGVLPIGRP+ + M AFFWS KP ++++ Sbjct: 202 WASLGWR-GDGFDERALLQRYDRASVMIGVLPIGRPQPGAERMAAFFWSLKPSDADEVRV 260 Query: 243 RGLQAWKEGVHALWPECEPYLAQIDGFEQMTLARYGHHTLPSPYGQRLAIIGDAAHSTSP 302 RGL AWKE V LWP+ E Y++QID F+Q++LARYGHHT+ P G+RLAIIGDAAHSTSP Sbjct: 261 RGLDAWKERVIRLWPQSEAYVSQIDSFDQLSLARYGHHTMKRPVGRRLAIIGDAAHSTSP 320 Query: 303 QLGQGANMALLDARALIHALQQSDTLQQALPRYAASRRRHVRTFQAMSAMFTPFYQSDSV 362 QLGQGANMALLDA AL HAL ++D+++ AL YA +RR HVR FQA+S FTPFYQSDSV Sbjct: 321 QLGQGANMALLDAAALSHALARTDSVEAALEAYARARRWHVRIFQALSLAFTPFYQSDSV 380 Query: 363 WLPWVRDQLAARLSVVPPAPQMLARMVAGTLVDPFTSIGLQERDW 407 LP++RD+L A ++ +PPAPQ LA MVAGT++DPF IGL E W Sbjct: 381 ALPFIRDRLVATVAKIPPAPQFLASMVAGTVIDPFKRIGLVEARW 425 >ref|YP_004612186.1| FAD dependent oxidoreductase [Mesorhizobium opportunistum WSM2075] gb|AEH88092.1| FAD dependent oxidoreductase [Mesorhizobium opportunistum WSM2075] Length = 420 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 260/405 (64%), Positives = 304/405 (75%), Gaps = 2/405 (0%) Query: 3 SMHVAIAGAGPAGLAMALYLKRAGHRVTLLERFVTAAPVGSGLILQPTGLTVLEDLGLFS 62 S +AIAGAGPAGLAMALYLKRAGHRVT+ ERF PVGSGLILQPTGLTVL DLGL Sbjct: 13 SYDIAIAGAGPAGLAMALYLKRAGHRVTVFERFEEPKPVGSGLILQPTGLTVLADLGLLD 72 Query: 63 RIAALGQRIDRLYGADARSGKPVLDVRYDAVRGGRYGIAVHRAALFGVLQEAAQREGIEA 122 I ALG RIDRL+GADA +G+ VLDVRYDA RG R+G+AVHRAALFGVL AA+RE I Sbjct: 73 DILALGARIDRLHGADASTGRTVLDVRYDAQRGSRFGLAVHRAALFGVLFRAARREAIAI 132 Query: 123 ETGHEINGLEQGSAGASLSTADGRRIGPFDLVIDASGARSLLRHHALNTCEPKRLPYGAF 182 ET EI +E G A+L +GRR GPF+L++DASG+RS LR A + P+ L YGAF Sbjct: 133 ETDVEIEAVEAGER-ATLVCGNGRRAGPFELIVDASGSRSKLRQCADSGGAPRPLTYGAF 191 Query: 183 WVSLRAQPGLSFGVNSLVQRYRRASTMIGVLPIGRPRLQDDPMVAFFWSTKPDQVEQIKQ 242 W SL + F ++L QRY RAS MIGVLPIGRP + M AFFWS KPD + ++ Sbjct: 192 WASLGWRDE-GFDEHALSQRYDRASVMIGVLPIGRPEPGAEKMAAFFWSLKPDDADAVRA 250 Query: 243 RGLQAWKEGVHALWPECEPYLAQIDGFEQMTLARYGHHTLPSPYGQRLAIIGDAAHSTSP 302 +GL AWKE V LWP+ Y +QIDGF+Q++LARYGHHT+ P G+RLAIIGDAAHSTSP Sbjct: 251 QGLDAWKERVVRLWPQSRAYTSQIDGFDQLSLARYGHHTMKLPVGRRLAIIGDAAHSTSP 310 Query: 303 QLGQGANMALLDARALIHALQQSDTLQQALPRYAASRRRHVRTFQAMSAMFTPFYQSDSV 362 QLGQGANMALLDA AL HAL Q+D ++ AL YA +RR HVR FQA+S FTPFYQSDSV Sbjct: 311 QLGQGANMALLDAAALSHALVQTDNVEAALEAYARARRWHVRVFQALSLAFTPFYQSDSV 370 Query: 363 WLPWVRDQLAARLSVVPPAPQMLARMVAGTLVDPFTSIGLQERDW 407 LP++RD+L A ++ +PPAPQ LA MVAGT +DPF IGL E W Sbjct: 371 ALPFIRDRLVATIAKIPPAPQFLASMVAGTAIDPFKRIGLTEARW 415 >ref|NP_103006.1| FAD-dependent monooxygenase [Mesorhizobium loti MAFF303099] dbj|BAB48792.1| probable FAD-dependent monooxygenase [Mesorhizobium loti MAFF303099] Length = 421 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 255/405 (62%), Positives = 301/405 (74%), Gaps = 2/405 (0%) Query: 3 SMHVAIAGAGPAGLAMALYLKRAGHRVTLLERFVTAAPVGSGLILQPTGLTVLEDLGLFS 62 S +AIAGAGPAGLA+ALYLKRAGHRVT+ ERF PVGSGLILQPTGLTVL DLGL Sbjct: 13 SYDIAIAGAGPAGLAVALYLKRAGHRVTIFERFNEPKPVGSGLILQPTGLTVLADLGLLD 72 Query: 63 RIAALGQRIDRLYGADARSGKPVLDVRYDAVRGGRYGIAVHRAALFGVLQEAAQREGIEA 122 I ALG RIDRL+GADA +G+ VLDVRYDA R R+G+AVHRAALFGVL AA RE I Sbjct: 73 DILALGARIDRLHGADASTGRTVLDVRYDAQRRRRFGLAVHRAALFGVLFRAAGREAIAI 132 Query: 123 ETGHEINGLEQGSAGASLSTADGRRIGPFDLVIDASGARSLLRHHALNTCEPKRLPYGAF 182 ETG EI +E G A L +GRR GPFDLV+DASG+RS LR N P+ L YGAF Sbjct: 133 ETGVEIETVETGER-AVLLCGNGRRAGPFDLVVDASGSRSKLRQGVANAGAPRPLAYGAF 191 Query: 183 WVSLRAQPGLSFGVNSLVQRYRRASTMIGVLPIGRPRLQDDPMVAFFWSTKPDQVEQIKQ 242 W SL + G F ++L+QRY RAS MIGVLPIGRP + M AFFWS KPD + ++ Sbjct: 192 WASLGWR-GEGFDEHALLQRYDRASVMIGVLPIGRPEPGAEKMAAFFWSLKPDDADAVRA 250 Query: 243 RGLQAWKEGVHALWPECEPYLAQIDGFEQMTLARYGHHTLPSPYGQRLAIIGDAAHSTSP 302 G+ AWKE V LWP+ E + +QID F+Q++LARYGHHT+ P G+RLA+IGDAAHSTSP Sbjct: 251 VGIDAWKERVVRLWPQSEAFTSQIDSFDQLSLARYGHHTMELPVGRRLAVIGDAAHSTSP 310 Query: 303 QLGQGANMALLDARALIHALQQSDTLQQALPRYAASRRRHVRTFQAMSAMFTPFYQSDSV 362 QLGQGANMALLDA AL HAL ++ +++ AL YA +RR HVR FQA+S FTPFYQSDS Sbjct: 311 QLGQGANMALLDAAALSHALARTQSIEAALEAYARARRWHVRVFQALSLAFTPFYQSDSA 370 Query: 363 WLPWVRDQLAARLSVVPPAPQMLARMVAGTLVDPFTSIGLQERDW 407 LP++RD+L A ++ +PPAPQ LA MVAGT++DPF GL E W Sbjct: 371 ALPFIRDRLVATIAKIPPAPQFLASMVAGTVIDPFRRAGLVEAQW 415 >ref|YP_002544891.1| glutamate synthase small subunit protein [Agrobacterium radiobacter K84] gb|ACM26961.1| glutamate synthase small subunit protein [Agrobacterium radiobacter K84] Length = 415 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 228/417 (54%), Positives = 278/417 (66%), Gaps = 5/417 (1%) Query: 1 MKSMHVAIAGAGPAGLAMALYLKRAGHRVTLLERFVTAAPVGSGLILQPTGLTVLEDLGL 60 MKS+ +AI GAGPAGLA AL+L RAGH ++ERF APVGS L+LQPTGLTVLE LGL Sbjct: 1 MKSLKIAIVGAGPAGLAAALFLSRAGHATEIIERFDNPAPVGSALMLQPTGLTVLESLGL 60 Query: 61 FSRIAALGQRIDRLYGADARSGKPVLDVRYDAVRGGRYGIAVHRAALFGVL-QEAAQREG 119 I A G RIDRL+G + + G+ VLDVRYDA+ GGRYG+AVHRAALF L E + R Sbjct: 61 GPAIHAAGNRIDRLFGTETKRGRTVLDVRYDALAGGRYGLAVHRAALFDTLYHEVSTRRY 120 Query: 120 IEAETGHEINGLEQGSAGASLSTADGRRIGPFDLVIDASGARSLLRHHALNTCEPKRLPY 179 + ++ LE+G L G R+GP+DLVIDASGARS L + T + L Y Sbjct: 121 LIFTGRRVVSSLEEGGQ-TYLVVEGGERLGPYDLVIDASGARSELVTASPVTPRARNLAY 179 Query: 180 GAFWVSLRAQPGLSFGVNSLVQRYRRASTMIGVLPIGRPRLQDDPMVAFFWSTKPDQVEQ 239 GAFW +L GL +L QRY +A MIGVLPIGR + A FWS K V++ Sbjct: 180 GAFWATLDCPDGL-VDERALTQRYDQAKVMIGVLPIGRRKPDVQKQAALFWSLKVADVDE 238 Query: 240 IKQRGLQAWKEGVHALWPECEPYLAQIDGFEQMTLARYGHHTLPSPYGQRLAIIGDAAHS 299 ++++GL WK + WPEC+P L QI +EQ+TLARY H T+ +PY +GDAAHS Sbjct: 239 VRRQGLDRWKAAIRGYWPECQPLLDQISDWEQLTLARYAHRTMATPYSGSTVFVGDAAHS 298 Query: 300 TSPQLGQGANMALLDARALIHALQQSDTLQQALPRYAASRRRHVRTFQAMSAMFTPFYQS 359 TSPQLGQGANMALLD AL HAL ++ + AL YA +RR HVR FQ +S FTPFYQS Sbjct: 299 TSPQLGQGANMALLDVAALAHALAGNEDIGTALAAYAQARRLHVRLFQLLSLAFTPFYQS 358 Query: 360 DSVWLPWVRDQLAARLSVVPPAPQMLARMVAGTLVDPFTSIGLQERDW--NIAPQPS 414 DS L WVRD+L A ++ VPP PQ+LA +V+GTLVDPF + GL E DW N PQPS Sbjct: 359 DSAALAWVRDRLVATIATVPPGPQILASIVSGTLVDPFETAGLSECDWLRNAVPQPS 415