BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3696.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776470.1| hypothetical protein Hsero_3074 [Herbaspiril...   155   2e-36
ref|YP_003911122.1| hypothetical protein BC1003_5921 [Burkholder...    91   5e-17
ref|YP_004359754.1| hypothetical protein bgla_1g11140 [Burkholde...    89   3e-16
ref|ZP_02883565.1| conserved hypothetical protein [Burkholderia ...    86   1e-15
ref|YP_002231585.1| hypothetical protein BCAL2461 [Burkholderia ...    85   3e-15

>ref|YP_003776470.1| hypothetical protein Hsero_3074 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64562.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 133

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 105/133 (78%), Positives = 112/133 (84%), Gaps = 7/133 (5%)

Query: 1   MDQNAVPQPSPQPNAEGNPARR-------HGHRGRWGVKLLLCLLCLPLLGVVVMLLWNW 53
           MDQNA+PQP PQP +   P R         GHRGRWG KL LCLLC+PLLGVVVMLLWNW
Sbjct: 1   MDQNAIPQPDPQPGSPPGPERNPGRRHGHRGHRGRWGFKLALCLLCVPLLGVVVMLLWNW 60

Query: 54  VMPPIFPGVAEIGFWRALGLLVLCRVLFGGFRGRHGGWHEKRRFMQARWEAMTPEERERC 113
           VMPPIFPGVAEIGFWRALGLLVLCR+LFGGFRGRHGGW +KR FM+ARWEAMTPEERERC
Sbjct: 61  VMPPIFPGVAEIGFWRALGLLVLCRILFGGFRGRHGGWRDKRHFMRARWEAMTPEERERC 120

Query: 114 QRRGRMFCREERK 126
           Q R RMFCR+ERK
Sbjct: 121 QLRSRMFCRDERK 133


>ref|YP_003911122.1| hypothetical protein BC1003_5921 [Burkholderia sp. CCGE1003]
 gb|ADN61831.1| hypothetical protein BC1003_5921 [Burkholderia sp. CCGE1003]
          Length = 102

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 56/93 (60%), Positives = 65/93 (69%), Gaps = 3/93 (3%)

Query: 26  RGRWGVKLLLCLLCLPLLGVVVMLLWNWVMPPIFPGVAEIGFWRALGLLVLCRVLFGGFR 85
           R R+  K LL L  + +LG VVM LWNWVMP +F GV  I F  ALGLLVL R+LFGGFR
Sbjct: 4   RIRYVGKALLALFAIGVLGWVVMALWNWVMPALFVGVKPIDFAHALGLLVLSRILFGGFR 63

Query: 86  GRHGGWHEKRRFMQARWEAMTPEERERCQRRGR 118
           G HGGW E+R +   +WEAMTPEERE+ Q   R
Sbjct: 64  G-HGGWRERRHWR--KWEAMTPEEREQFQTAWR 93


>ref|YP_004359754.1| hypothetical protein bgla_1g11140 [Burkholderia gladioli BSR3]
 gb|AEA59798.1| hypothetical protein bgla_1g11140 [Burkholderia gladioli BSR3]
          Length = 104

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 61/87 (70%), Gaps = 3/87 (3%)

Query: 26  RGRWGVKLLLCLLCLPLLGVVVMLLWNWVMPPIFPGVAEIGFWRALGLLVLCRVLFGGFR 85
           R RW  K +  L+ + +LG  VM+LWNWVMP +F G   I    ALGLLVL R+LFGGFR
Sbjct: 4   RIRWIAKAVFALVAIVVLGWAVMMLWNWVMPALFVGARSIDLAHALGLLVLSRILFGGFR 63

Query: 86  GRHGGWHEKRRFMQARWEAMTPEERER 112
           G HGGWH +R +   +WEAMTPEERER
Sbjct: 64  G-HGGWHRRRHWR--KWEAMTPEERER 87


>ref|ZP_02883565.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gb|EDT10997.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 102

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 53/93 (56%), Positives = 62/93 (66%), Gaps = 3/93 (3%)

Query: 26  RGRWGVKLLLCLLCLPLLGVVVMLLWNWVMPPIFPGVAEIGFWRALGLLVLCRVLFGGFR 85
           R R   K LL ++ +  LG VVM LWNWV+P +F G   I F  ALGLLVL R+LFGGFR
Sbjct: 4   RIRCAGKALLVVVAIAALGWVVMTLWNWVIPALFVGARAIDFAHALGLLVLSRILFGGFR 63

Query: 86  GRHGGWHEKRRFMQARWEAMTPEERERCQRRGR 118
           G HGGW E+R +   +WEAMTPEERE  Q   R
Sbjct: 64  G-HGGWRERRHWR--KWEAMTPEEREHFQTAWR 93


>ref|YP_002231585.1| hypothetical protein BCAL2461 [Burkholderia cenocepacia J2315]
 emb|CAR52762.1| putative membrane protein [Burkholderia cenocepacia J2315]
          Length = 102

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 62/87 (71%), Gaps = 3/87 (3%)

Query: 26  RGRWGVKLLLCLLCLPLLGVVVMLLWNWVMPPIFPGVAEIGFWRALGLLVLCRVLFGGFR 85
           R R   K LL ++ + +LG VVM+LWNWVMP +F G   I F  ALGLLVL R+LFGGFR
Sbjct: 4   RIRCAGKALLVVVAIGVLGGVVMMLWNWVMPALFVGARTIDFAHALGLLVLSRILFGGFR 63

Query: 86  GRHGGWHEKRRFMQARWEAMTPEERER 112
           G H GWH +R +   +WEAMTPEERE+
Sbjct: 64  G-HRGWHGRRHWR--KWEAMTPEEREQ 87