BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3695.p (195 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776469.1| RNA polymerase sigma-70 factor, ECF subfamil... 316 9e-85 ref|YP_836026.1| ECF subfamily RNA polymerase sigma-24 factor [B... 247 7e-64 ref|ZP_02883566.1| RNA polymerase, sigma-24 subunit, ECF subfami... 244 5e-63 ref|YP_559618.1| sigma-24 (FecI) [Burkholderia xenovorans LB400]... 243 9e-63 ref|YP_004359755.1| RNA polymerase, sigma-24 subunit, ECF subfam... 241 4e-62 >ref|YP_003776469.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64561.1| RNA polymerase sigma-70 factor, ECF subfamily (sigma-24) transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 195 Score = 316 bits (810), Expect = 9e-85, Method: Composition-based stats. Identities = 181/195 (92%), Positives = 186/195 (95%) Query: 1 MQPISTLSPMSDQDREITATVMRERSRLGGFIRRRVADAGEAEDILQEVFYEFVQAYRLP 60 MQPIS SPMSDQDREITATVMRERSRLGGFIRRRVADAGEAEDILQEVFYEFVQAYRLP Sbjct: 1 MQPISLSSPMSDQDREITATVMRERSRLGGFIRRRVADAGEAEDILQEVFYEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVEGGEDSWRLDLVLPASDGGPE 120 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQV+G +D+WRLDL LPAS GPE Sbjct: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVDGADDAWRLDLALPASADGPE 120 Query: 121 AAYARAALIEALQAALDELPPAQREVFIAHELDGLSFKEMSAASGTSLNTLLARKRYAVL 180 AAYARAALI+ALQ AL ELP AQREVFIAHELDGLSFKEM+AASGTSLNTLLARKRYAVL Sbjct: 121 AAYARAALIDALQEALGELPEAQREVFIAHELDGLSFKEMAAASGTSLNTLLARKRYAVL 180 Query: 181 HLRERLQAVYDELEM 195 HLRERLQAVYDELEM Sbjct: 181 HLRERLQAVYDELEM 195 >ref|YP_836026.1| ECF subfamily RNA polymerase sigma-24 factor [Burkholderia cenocepacia HI2424] gb|ABK09133.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia cenocepacia HI2424] Length = 193 Score = 247 bits (630), Expect = 7e-64, Method: Composition-based stats. Identities = 135/194 (69%), Positives = 158/194 (81%), Gaps = 2/194 (1%) Query: 1 MQPISTLSPMSDQDREITATVMRERSRLGGFIRRRVADAGEAEDILQEVFYEFVQAYRLP 60 M+P T PM+D DR+ITATVMRER+RLG FIRRR+ D +AED+LQ+V +EFVQAYRLP Sbjct: 1 MEPPPTSQPMTDSDRDITATVMRERTRLGNFIRRRIRDPDDAEDVLQDVLHEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVEGGEDSWRLDLVLPASDGGPE 120 PIEQ SAWLFR ARNRIIDRFRKKKE+PL + +E + + +RLDL LP+ D GPE Sbjct: 61 APIEQASAWLFRTARNRIIDRFRKKKEQPLTDLLGVE--DEADSEYRLDLALPSHDAGPE 118 Query: 121 AAYARAALIEALQAALDELPPAQREVFIAHELDGLSFKEMSAASGTSLNTLLARKRYAVL 180 A YAR L++ALQ ALDELP QREVFIAHEL+GLSFKEM+A SG +LNTLLARKRYAVL Sbjct: 119 ALYARTLLLKALQGALDELPANQREVFIAHELEGLSFKEMAAQSGVTLNTLLARKRYAVL 178 Query: 181 HLRERLQAVYDELE 194 HLR RLQ +YDEL+ Sbjct: 179 HLRARLQPIYDELD 192 >ref|ZP_02883566.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia graminis C4D1M] gb|EDT10998.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia graminis C4D1M] Length = 193 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 135/195 (69%), Positives = 159/195 (81%), Gaps = 2/195 (1%) Query: 1 MQPISTLSPMSDQDREITATVMRERSRLGGFIRRRVADAGEAEDILQEVFYEFVQAYRLP 60 M+P T PM+D+D +ITATV+RER+RL FIRRR+ D +AEDILQ+VF+EFVQAYRLP Sbjct: 1 MEPPPTSQPMTDRDSDITATVVRERTRLVNFIRRRIRDPDDAEDILQDVFHEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVEGGEDSWRLDLVLPASDGGPE 120 PIEQ SAWLFR ARNRIIDRFRKK+E+PLP+ + + G E +RLDL LPA D GPE Sbjct: 61 APIEQASAWLFRAARNRIIDRFRKKREQPLPDPFETDDDAGSE--YRLDLALPAHDAGPE 118 Query: 121 AAYARAALIEALQAALDELPPAQREVFIAHELDGLSFKEMSAASGTSLNTLLARKRYAVL 180 A YARA L++ALQ ALDELPP QR+VFIAHEL+G SFK+M A SG LNTLLARKRYAVL Sbjct: 119 ALYARALLLKALQDALDELPPNQRDVFIAHELEGRSFKDMVAQSGVPLNTLLARKRYAVL 178 Query: 181 HLRERLQAVYDELEM 195 HLR RLQ +YDEL++ Sbjct: 179 HLRARLQVIYDELDI 193 >ref|YP_559618.1| sigma-24 (FecI) [Burkholderia xenovorans LB400] gb|ABE31566.1| Sigma-24 (FecI) [Burkholderia xenovorans LB400] Length = 193 Score = 243 bits (621), Expect = 9e-63, Method: Composition-based stats. Identities = 135/195 (69%), Positives = 161/195 (82%), Gaps = 2/195 (1%) Query: 1 MQPISTLSPMSDQDREITATVMRERSRLGGFIRRRVADAGEAEDILQEVFYEFVQAYRLP 60 M+P T M+++D +ITATV+RER+RL FIRRR+ D +AEDILQ+VF+EFVQAYRLP Sbjct: 1 MEPPPTPGTMTERDSDITATVVRERTRLVNFIRRRIRDPNDAEDILQDVFHEFVQAYRLP 60 Query: 61 EPIEQVSAWLFRVARNRIIDRFRKKKEEPLPEAHDIEQVEGGEDSWRLDLVLPASDGGPE 120 PIEQ SAWLFR ARNRI+DRFRKKKEEPL + D + G E +RLDL LPA D GPE Sbjct: 61 APIEQASAWLFRAARNRIVDRFRKKKEEPLTDLPDHDDEAGSE--YRLDLNLPAHDAGPE 118 Query: 121 AAYARAALIEALQAALDELPPAQREVFIAHELDGLSFKEMSAASGTSLNTLLARKRYAVL 180 A YARA L++ALQ ALDELPP QR+VFIAHEL+GLSFK+++A SG +LNTLLARKRYAVL Sbjct: 119 AQYARAVLLKALQDALDELPPNQRDVFIAHELEGLSFKDIAAESGVALNTLLARKRYAVL 178 Query: 181 HLRERLQAVYDELEM 195 HLR RLQA+YDEL++ Sbjct: 179 HLRARLQAIYDELDI 193 >ref|YP_004359755.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia gladioli BSR3] gb|AEA59799.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Burkholderia gladioli BSR3] Length = 192 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 132/187 (70%), Positives = 158/187 (84%), Gaps = 3/187 (1%) Query: 9 PMSDQDREITATVMRERSRLGGFIRRRVADAGEAEDILQEVFYEFVQAYRLPEPIEQVSA 68 PM+D+DR+++AT+ RER++LG FIRRRV D +AEDILQ+VF++FVQAYRLP PIEQ SA Sbjct: 9 PMTDRDRDMSATISRERTKLGNFIRRRVRDPSDAEDILQDVFHDFVQAYRLPAPIEQASA 68 Query: 69 WLFRVARNRIIDRFRKKKEEPLPEAHDIEQVEGGEDSWRLDLVLPASDGGPEAAYARAAL 128 WLFR ARNRIIDRFRKKKE+PL E ++Q E G+D +RLDL LPA D GPEA YAR + Sbjct: 69 WLFRAARNRIIDRFRKKKEQPLAEL--VDQGEDGDD-YRLDLALPAHDAGPEALYARGVV 125 Query: 129 IEALQAALDELPPAQREVFIAHELDGLSFKEMSAASGTSLNTLLARKRYAVLHLRERLQA 188 ++ALQ ALDELP QREVFIAHEL+GLSFK M+A SG ++NTLLARKRYAVLHLR RLQA Sbjct: 126 LKALQQALDELPANQREVFIAHELEGLSFKAMAADSGVAVNTLLARKRYAVLHLRARLQA 185 Query: 189 VYDELEM 195 YDEL++ Sbjct: 186 TYDELDI 192